Wall clock time and date at job start Mon Mar 30 2020 01:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38636 * 120.46848 * 2 1 4 4 C 1.38583 * 118.48663 * 180.26477 * 3 2 1 5 5 C 1.38604 * 119.35013 * 359.74400 * 4 3 2 6 6 N 1.31490 * 120.90173 * 359.97438 * 5 4 3 7 7 C 1.32749 * 121.64456 * 0.02562 * 6 5 4 8 8 C 1.48168 * 119.72074 * 179.97438 * 7 6 5 9 9 O 1.21519 * 119.99519 * 174.48808 * 8 7 6 10 10 N 1.34773 * 120.00542 * 354.49050 * 8 7 6 11 11 C 1.46491 * 120.00379 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47298 * 35.00245 * 11 10 8 13 13 C 1.53002 * 109.47167 * 275.00040 * 11 10 8 14 14 C 1.53000 * 109.47290 * 154.99855 * 11 10 8 15 15 C 1.52999 * 109.47371 * 295.00117 * 14 11 10 16 16 N 1.46501 * 109.47334 * 179.97438 * 15 14 11 17 17 C 1.36931 * 119.99988 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00459 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99932 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99679 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46949 * 90.00092 * 21 19 17 23 23 H 1.48497 * 109.46889 * 209.99738 * 21 19 17 24 24 H 1.48498 * 109.46995 * 329.99873 * 21 19 17 25 25 H 1.09000 * 109.47268 * 263.53415 * 1 2 3 26 26 H 1.08999 * 109.47233 * 23.53337 * 1 2 3 27 27 H 1.08994 * 109.46971 * 143.53324 * 1 2 3 28 28 H 1.07999 * 120.75764 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.32581 * 179.73114 * 4 3 2 30 30 H 1.08006 * 119.54796 * 179.97438 * 5 4 3 31 31 H 0.97006 * 119.99772 * 0.02562 * 10 8 7 32 32 H 1.08994 * 109.47004 * 59.99962 * 13 11 10 33 33 H 1.09002 * 109.46817 * 179.97438 * 13 11 10 34 34 H 1.08992 * 109.47081 * 299.99786 * 13 11 10 35 35 H 1.08998 * 109.46922 * 55.00529 * 14 11 10 36 36 H 1.09007 * 109.46903 * 174.99949 * 14 11 10 37 37 H 1.08999 * 109.46921 * 299.99993 * 15 14 11 38 38 H 1.09001 * 109.46874 * 59.99885 * 15 14 11 39 39 H 0.97006 * 119.99696 * 359.97438 * 16 15 14 40 40 H 0.96998 * 119.99535 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1470 -0.0056 5 6 4.2321 -0.0839 -0.0057 6 7 3.5406 -1.2023 0.0001 7 6 2.2132 -1.2003 0.0056 8 6 1.4767 -2.4860 0.0114 9 8 0.2662 -2.4922 0.1175 10 7 2.1493 -3.6485 -0.1010 11 6 1.4211 -4.9196 -0.0947 12 1 0.4621 -4.7915 -0.5966 13 6 1.1853 -5.3651 1.3499 14 6 2.2426 -5.9816 -0.8283 15 6 2.3726 -5.5969 -2.3035 16 7 3.1598 -6.6135 -3.0058 17 6 3.4096 -6.4811 -4.3456 18 1 3.0261 -5.6275 -4.8847 19 6 4.1550 -7.4446 -5.0111 20 7 4.6211 -8.4857 -4.3544 21 14 4.4953 -7.2644 -6.8391 22 1 5.7583 -6.5083 -7.0352 23 1 4.6233 -8.6101 -7.4537 24 1 3.3747 -6.5314 -7.4812 25 1 -0.3634 -0.1157 1.0211 26 1 -0.3634 0.9422 -0.4103 27 1 -0.3633 -0.8264 -0.6108 28 1 1.6901 2.1415 0.0004 29 1 4.1722 2.0598 -0.0102 30 1 5.3114 -0.1250 -0.0105 31 1 3.1156 -3.6435 -0.1853 32 1 0.6000 -4.6086 1.8724 33 1 0.6431 -6.3107 1.3545 34 1 2.1443 -5.4933 1.8517 35 1 3.2345 -6.0467 -0.3810 36 1 1.7434 -6.9472 -0.7473 37 1 1.3807 -5.5318 -2.7507 38 1 2.8718 -4.6313 -2.3845 39 1 3.5046 -7.3800 -2.5215 40 1 5.1423 -9.1588 -4.8194 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699091056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:09 Heat of formation + Delta-G solvation = 1.614052 kcal Electronic energy + Delta-G solvation = -21002.931686 eV Core-core repulsion = 17817.676086 eV Total energy + Delta-G solvation = -3185.255600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.88643 -39.12427 -36.55824 -34.44801 -33.68545 -32.47925 -31.61201 -30.46623 -27.83261 -27.55062 -24.91584 -23.91402 -22.56026 -21.71654 -20.99880 -20.37638 -18.16408 -17.07072 -16.86661 -16.01159 -15.75290 -15.31409 -14.89878 -14.65135 -14.02109 -13.79942 -13.67896 -13.40446 -13.33274 -13.25518 -12.85746 -12.80108 -12.47618 -12.33476 -12.18150 -11.73928 -11.16842 -10.97590 -10.76081 -10.60031 -10.52649 -10.12265 -10.04525 -10.01245 -9.66815 -9.49007 -9.26270 -8.88360 -8.79388 -6.88661 -5.73572 -3.01909 0.48374 0.97375 2.71619 3.15668 3.45802 3.50737 3.52724 3.70526 4.03771 4.51487 4.57045 4.61023 4.69068 4.72422 4.99454 5.14244 5.27775 5.34575 5.40812 5.47734 5.58875 5.61896 5.76303 5.77633 5.81152 5.92298 5.97852 6.05459 6.14186 6.28370 6.33125 6.37419 6.43003 6.62984 6.87161 6.91712 7.44107 7.72963 7.73969 8.25647 8.45661 9.56642 10.14751 10.49737 11.49513 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.003898 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.244409 B = 7180.771153 C = 8061.909407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.075 4.075 3 C -0.089 4.089 4 C -0.148 4.148 5 C 0.091 3.909 6 N -0.452 5.452 7 C 0.074 3.926 8 C 0.570 3.430 9 O -0.534 6.534 10 N -0.697 5.697 11 C 0.143 3.857 12 H 0.090 0.910 13 C -0.160 4.160 14 C -0.135 4.135 15 C 0.153 3.847 16 N -0.734 5.734 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.163 0.837 31 H 0.412 0.588 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.018 0.982 38 H 0.019 0.981 39 H 0.383 0.617 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.599 18.688 13.517 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.078 4.078 3 C -0.115 4.115 4 C -0.168 4.168 5 C -0.069 4.069 6 N -0.163 5.163 7 C -0.064 4.064 8 C 0.355 3.645 9 O -0.412 6.412 10 N -0.348 5.348 11 C 0.039 3.961 12 H 0.108 0.892 13 C -0.219 4.219 14 C -0.173 4.173 15 C 0.026 3.974 16 N -0.378 5.378 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.158 0.842 29 H 0.157 0.843 30 H 0.180 0.820 31 H 0.248 0.752 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.035 0.965 38 H 0.037 0.963 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.058 17.864 13.411 22.903 hybrid contribution 0.643 0.732 -0.941 1.354 sum -4.415 18.596 12.471 22.821 Atomic orbital electron populations 1.21060 0.88968 1.03421 1.03914 1.20964 0.98469 0.92398 0.95933 1.21551 0.94183 0.98073 0.97678 1.22372 0.95283 0.99860 0.99287 1.22800 1.00571 0.87272 0.96301 1.67561 1.07099 1.32026 1.09577 1.21084 0.89879 0.93777 1.01633 1.17834 0.86559 0.83153 0.76938 1.90714 1.13090 1.86797 1.50555 1.46003 1.11799 1.05116 1.71847 1.21050 0.96594 0.82323 0.96164 0.89198 1.22157 1.01910 1.01565 0.96225 1.22064 1.00275 0.98042 0.96917 1.20639 0.94736 0.92788 0.89249 1.42360 1.62820 1.25345 1.07255 1.19237 1.26995 1.05357 0.85323 0.91292 1.24733 1.00988 0.97208 0.98103 1.69661 1.41079 1.12413 1.35186 0.86189 0.78043 0.76728 0.85261 1.21732 1.21744 1.20780 0.90437 0.92307 0.88072 0.84247 0.84294 0.82012 0.75188 0.92421 0.91424 0.92454 0.91260 0.90145 0.96452 0.96300 0.78311 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 8.74 36.01 0.31 -0.91 16 2 C -0.07 -0.85 5.93 -104.09 -0.62 -1.47 16 3 C -0.09 -0.77 9.83 -39.31 -0.39 -1.15 16 4 C -0.15 -1.16 10.11 -39.32 -0.40 -1.56 16 5 C 0.09 0.88 11.18 -17.56 -0.20 0.68 16 6 N -0.45 -5.78 9.56 -9.80 -0.09 -5.87 16 7 C 0.07 1.00 6.75 -83.01 -0.56 0.44 16 8 C 0.57 8.49 7.72 -12.18 -0.09 8.39 16 9 O -0.53 -8.65 12.97 5.35 0.07 -8.58 16 10 N -0.70 -10.00 4.52 -54.65 -0.25 -10.24 16 11 C 0.14 2.04 2.57 -67.93 -0.17 1.86 16 12 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 13 C -0.16 -1.95 9.48 37.16 0.35 -1.60 16 14 C -0.13 -2.17 4.87 -26.73 -0.13 -2.30 16 15 C 0.15 3.20 6.15 -4.04 -0.02 3.17 16 16 N -0.73 -19.14 5.60 -59.91 -0.34 -19.47 16 17 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 21 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.47 8.06 -51.93 -0.42 0.05 16 27 H 0.10 1.29 5.85 -51.93 -0.30 0.99 16 28 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 29 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 30 H 0.16 1.13 8.06 -52.48 -0.42 0.70 16 31 H 0.41 5.82 7.95 -40.82 -0.32 5.50 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.02 0.41 7.75 -51.93 -0.40 0.00 16 39 H 0.38 10.37 7.67 -40.82 -0.31 10.06 16 40 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 337.56 15.07 5.09 5.09 Total: -1.00 -33.26 337.56 -7.91 -41.17 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -5.93 Total: 10.05 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -2.16 Total: -1.99 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: 0.05 Total: -63.56 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.07 Total: -8.58 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.26 -7.91 -41.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699091056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.785 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds