Wall clock time and date at job start Mon Mar 30 2020 01:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38636 * 120.46848 * 2 1 4 4 C 1.38583 * 118.48663 * 180.26477 * 3 2 1 5 5 C 1.38604 * 119.35013 * 359.74400 * 4 3 2 6 6 N 1.31490 * 120.90173 * 359.97438 * 5 4 3 7 7 C 1.32749 * 121.64456 * 0.02562 * 6 5 4 8 8 C 1.48168 * 119.72074 * 179.97438 * 7 6 5 9 9 O 1.21519 * 119.99519 * 174.48808 * 8 7 6 10 10 N 1.34773 * 120.00542 * 354.49050 * 8 7 6 11 11 C 1.46491 * 120.00379 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47298 * 35.00245 * 11 10 8 13 13 C 1.53002 * 109.47167 * 275.00040 * 11 10 8 14 14 C 1.53000 * 109.47290 * 154.99855 * 11 10 8 15 15 C 1.52999 * 109.47371 * 295.00117 * 14 11 10 16 16 N 1.46501 * 109.47334 * 179.97438 * 15 14 11 17 17 C 1.36931 * 119.99988 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00459 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99932 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99679 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46949 * 90.00092 * 21 19 17 23 23 H 1.48497 * 109.46889 * 209.99738 * 21 19 17 24 24 H 1.48498 * 109.46995 * 329.99873 * 21 19 17 25 25 H 1.09000 * 109.47268 * 263.53415 * 1 2 3 26 26 H 1.08999 * 109.47233 * 23.53337 * 1 2 3 27 27 H 1.08994 * 109.46971 * 143.53324 * 1 2 3 28 28 H 1.07999 * 120.75764 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.32581 * 179.73114 * 4 3 2 30 30 H 1.08006 * 119.54796 * 179.97438 * 5 4 3 31 31 H 0.97006 * 119.99772 * 0.02562 * 10 8 7 32 32 H 1.08994 * 109.47004 * 59.99962 * 13 11 10 33 33 H 1.09002 * 109.46817 * 179.97438 * 13 11 10 34 34 H 1.08992 * 109.47081 * 299.99786 * 13 11 10 35 35 H 1.08998 * 109.46922 * 55.00529 * 14 11 10 36 36 H 1.09007 * 109.46903 * 174.99949 * 14 11 10 37 37 H 1.08999 * 109.46921 * 299.99993 * 15 14 11 38 38 H 1.09001 * 109.46874 * 59.99885 * 15 14 11 39 39 H 0.97006 * 119.99696 * 359.97438 * 16 15 14 40 40 H 0.96998 * 119.99535 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1470 -0.0056 5 6 4.2321 -0.0839 -0.0057 6 7 3.5406 -1.2023 0.0001 7 6 2.2132 -1.2003 0.0056 8 6 1.4767 -2.4860 0.0114 9 8 0.2662 -2.4922 0.1175 10 7 2.1493 -3.6485 -0.1010 11 6 1.4211 -4.9196 -0.0947 12 1 0.4621 -4.7915 -0.5966 13 6 1.1853 -5.3651 1.3499 14 6 2.2426 -5.9816 -0.8283 15 6 2.3726 -5.5969 -2.3035 16 7 3.1598 -6.6135 -3.0058 17 6 3.4096 -6.4811 -4.3456 18 1 3.0261 -5.6275 -4.8847 19 6 4.1550 -7.4446 -5.0111 20 7 4.6211 -8.4857 -4.3544 21 14 4.4953 -7.2644 -6.8391 22 1 5.7583 -6.5083 -7.0352 23 1 4.6233 -8.6101 -7.4537 24 1 3.3747 -6.5314 -7.4812 25 1 -0.3634 -0.1157 1.0211 26 1 -0.3634 0.9422 -0.4103 27 1 -0.3633 -0.8264 -0.6108 28 1 1.6901 2.1415 0.0004 29 1 4.1722 2.0598 -0.0102 30 1 5.3114 -0.1250 -0.0105 31 1 3.1156 -3.6435 -0.1853 32 1 0.6000 -4.6086 1.8724 33 1 0.6431 -6.3107 1.3545 34 1 2.1443 -5.4933 1.8517 35 1 3.2345 -6.0467 -0.3810 36 1 1.7434 -6.9472 -0.7473 37 1 1.3807 -5.5318 -2.7507 38 1 2.8718 -4.6313 -2.3845 39 1 3.5046 -7.3800 -2.5215 40 1 5.1423 -9.1588 -4.8194 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699091056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:09 Heat of formation + Delta-G solvation = -21.132702 kcal Electronic energy + Delta-G solvation = -21003.918059 eV Core-core repulsion = 17817.676086 eV Total energy + Delta-G solvation = -3186.241973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.78352 -40.14129 -37.91663 -36.19175 -34.61018 -33.63103 -33.08366 -31.81401 -29.44482 -28.36626 -26.02536 -25.57576 -23.56137 -23.10357 -22.23959 -21.54685 -19.40099 -18.88640 -17.82317 -17.08934 -16.71097 -16.47687 -16.32318 -15.84600 -15.52449 -15.27481 -15.09157 -14.78949 -14.49542 -14.27282 -14.03095 -13.69056 -13.57375 -13.34765 -13.09463 -12.93958 -12.90054 -12.79414 -12.38456 -12.27572 -12.02747 -11.94716 -11.65943 -11.07216 -10.96606 -10.77021 -10.40832 -10.21777 -9.85249 -9.03449 -7.97785 -5.27252 -0.33235 0.25036 1.45610 1.47629 1.56334 1.73289 2.11070 2.53928 2.85625 3.17978 3.35519 3.60307 3.77761 3.86498 3.97652 4.03887 4.05692 4.13663 4.36492 4.50765 4.53889 4.57861 4.62846 4.73977 4.78152 4.78903 4.85384 4.95973 5.10286 5.16224 5.19717 5.24297 5.29664 5.36075 5.45564 5.56808 5.70272 6.24659 6.42330 6.82457 7.15569 7.31056 8.05241 8.30681 9.25631 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.003898 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.244409 B = 7180.771153 C = 8061.909407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.086 4.086 4 C -0.131 4.131 5 C 0.078 3.922 6 N -0.480 5.480 7 C 0.040 3.960 8 C 0.564 3.436 9 O -0.556 6.556 10 N -0.698 5.698 11 C 0.150 3.850 12 H 0.076 0.924 13 C -0.151 4.151 14 C -0.118 4.118 15 C 0.155 3.845 16 N -0.745 5.745 17 C -0.252 4.252 18 H 0.069 0.931 19 C -0.071 4.071 20 N -0.967 5.967 21 Si 0.974 3.026 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.272 1.272 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.174 0.826 29 H 0.180 0.820 30 H 0.187 0.813 31 H 0.412 0.588 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.009 0.991 38 H 0.015 0.985 39 H 0.376 0.624 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 20.939 13.641 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.112 4.112 4 C -0.150 4.150 5 C -0.083 4.083 6 N -0.191 5.191 7 C -0.096 4.096 8 C 0.350 3.650 9 O -0.436 6.436 10 N -0.349 5.349 11 C 0.045 3.955 12 H 0.094 0.906 13 C -0.209 4.209 14 C -0.157 4.157 15 C 0.029 3.971 16 N -0.388 5.388 17 C -0.384 4.384 18 H 0.087 0.913 19 C -0.264 4.264 20 N -0.617 5.617 21 Si 0.803 3.197 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.197 1.197 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.191 0.809 29 H 0.198 0.802 30 H 0.204 0.796 31 H 0.248 0.752 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.027 0.973 38 H 0.033 0.967 39 H 0.208 0.792 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.536 20.138 13.549 24.692 hybrid contribution 0.500 0.149 -0.957 1.090 sum -4.036 20.287 12.591 24.216 Atomic orbital electron populations 1.20968 0.88870 1.03626 1.03357 1.21183 0.98820 0.92891 0.96178 1.21977 0.94721 0.98237 0.96264 1.22825 0.95249 1.00604 0.96345 1.23385 1.01780 0.87385 0.95724 1.67487 1.06979 1.33931 1.10694 1.20941 0.90505 0.93534 1.04647 1.18230 0.86525 0.83907 0.76328 1.90693 1.13964 1.87276 1.51623 1.46014 1.11737 1.05168 1.71975 1.20937 0.95416 0.81941 0.97216 0.90611 1.22071 1.02510 1.01962 0.94377 1.21900 1.01075 0.98858 0.93821 1.20727 0.93219 0.91442 0.91739 1.42542 1.63331 1.26107 1.06805 1.19593 1.26728 1.05299 0.86732 0.91287 1.25566 1.01180 0.97038 1.02592 1.69808 1.41909 1.13165 1.36851 0.85138 0.78091 0.76611 0.79908 1.21117 1.21733 1.19729 0.90677 0.89628 0.90920 0.80852 0.80223 0.79638 0.75179 0.92929 0.89998 0.91555 0.90705 0.89537 0.97261 0.96697 0.79171 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.30 8.74 71.24 0.62 -1.68 16 2 C -0.09 -1.91 5.93 -19.52 -0.12 -2.03 16 3 C -0.09 -1.23 9.83 22.45 0.22 -1.01 16 4 C -0.13 -1.59 10.11 22.44 0.23 -1.37 16 5 C 0.08 1.35 11.18 84.83 0.95 2.30 16 6 N -0.48 -12.10 9.56 -184.91 -1.77 -13.87 16 7 C 0.04 1.09 6.75 41.89 0.28 1.38 16 8 C 0.56 17.42 7.72 86.88 0.67 18.09 16 9 O -0.56 -18.85 12.97 -3.77 -0.05 -18.90 16 10 N -0.70 -20.60 4.52 -445.11 -2.01 -22.61 16 11 C 0.15 4.31 2.57 44.99 0.12 4.43 16 12 H 0.08 2.41 7.58 -2.39 -0.02 2.39 16 13 C -0.15 -3.60 9.48 71.98 0.68 -2.91 16 14 C -0.12 -3.83 4.87 30.59 0.15 -3.68 16 15 C 0.16 6.59 6.15 86.38 0.53 7.12 16 16 N -0.74 -39.42 5.60 -343.45 -1.92 -41.35 16 17 C -0.25 -14.67 9.99 84.04 0.84 -13.83 16 18 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 19 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 20 N -0.97 -59.89 13.06 21.65 0.28 -59.60 16 21 Si 0.97 46.99 29.55 68.60 2.03 49.02 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 25 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.08 1.23 8.06 -2.39 -0.02 1.21 16 27 H 0.07 1.94 5.85 -2.39 -0.01 1.92 16 28 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 29 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 30 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 31 H 0.41 11.99 7.95 -92.70 -0.74 11.25 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.02 0.65 7.75 -2.39 -0.02 0.64 16 39 H 0.38 20.70 7.67 -92.70 -0.71 19.99 16 40 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -72.81 337.56 1.80 -71.01 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -0.40 Total: 33.22 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 5.64 Total: 3.08 kcal Atomic # 7 Polarization: -132.02 SS G_CDS: -5.42 Total: -137.43 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.05 Total: -18.90 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -72.81 1.80 -71.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699091056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.876 kcal (2) G-P(sol) polarization free energy of solvation -72.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds