Wall clock time and date at job start Mon Mar 30 2020 01:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38630 * 120.47324 * 2 1 4 4 C 1.38585 * 118.49049 * 180.28302 * 3 2 1 5 5 C 1.38600 * 119.34868 * 359.72729 * 4 3 2 6 6 N 1.31495 * 120.90423 * 0.02562 * 5 4 3 7 7 C 1.32737 * 121.64162 * 359.97438 * 6 5 4 8 8 C 1.48165 * 119.72562 * 180.02562 * 7 6 5 9 9 O 1.21514 * 120.00653 * 174.43366 * 8 7 6 10 10 N 1.34780 * 119.99712 * 354.43323 * 8 7 6 11 11 C 1.46508 * 120.00090 * 180.02562 * 10 8 7 12 12 H 1.08993 * 109.46888 * 325.00017 * 11 10 8 13 13 C 1.52995 * 109.46867 * 84.99945 * 11 10 8 14 14 C 1.52997 * 109.46971 * 205.00237 * 11 10 8 15 15 C 1.52990 * 109.47567 * 64.99830 * 14 11 10 16 16 N 1.46501 * 109.47499 * 179.97438 * 15 14 11 17 17 C 1.36936 * 119.99970 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00277 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99788 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99755 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00257 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.46920 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47673 * 119.99281 * 21 19 17 24 24 H 1.48498 * 109.47338 * 239.99833 * 21 19 17 25 25 H 1.08996 * 109.47394 * 263.61200 * 1 2 3 26 26 H 1.09004 * 109.47190 * 23.61118 * 1 2 3 27 27 H 1.09006 * 109.47310 * 143.60937 * 1 2 3 28 28 H 1.08002 * 120.75597 * 0.04206 * 3 2 1 29 29 H 1.08000 * 120.32644 * 179.71453 * 4 3 2 30 30 H 1.08009 * 119.54879 * 180.02562 * 5 4 3 31 31 H 0.96993 * 119.99971 * 0.02562 * 10 8 7 32 32 H 1.09004 * 109.47204 * 299.99967 * 13 11 10 33 33 H 1.09001 * 109.47102 * 60.00023 * 13 11 10 34 34 H 1.09002 * 109.47101 * 180.02562 * 13 11 10 35 35 H 1.09000 * 109.46926 * 185.00581 * 14 11 10 36 36 H 1.09002 * 109.46943 * 304.99473 * 14 11 10 37 37 H 1.09000 * 109.47611 * 300.00332 * 15 14 11 38 38 H 1.09002 * 109.47280 * 59.99849 * 15 14 11 39 39 H 0.97001 * 119.99916 * 0.02562 * 16 15 14 40 40 H 0.97002 * 119.99404 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5950 1.1469 -0.0060 5 6 4.2321 -0.0840 -0.0061 6 7 3.5406 -1.2024 -0.0010 7 6 2.2132 -1.2004 0.0049 8 6 1.4766 -2.4860 0.0110 9 8 0.2662 -2.4923 0.1184 10 7 2.1491 -3.6485 -0.1026 11 6 1.4207 -4.9197 -0.0971 12 1 0.5655 -4.8454 0.5745 13 6 0.9320 -5.2335 -1.5125 14 6 2.3494 -6.0374 0.3815 15 6 2.7388 -5.7878 1.8398 16 7 3.6276 -6.8584 2.2981 17 6 4.1083 -6.8473 3.5803 18 1 3.8326 -6.0491 4.2535 19 6 4.9508 -7.8615 4.0144 20 7 5.2872 -8.8340 3.1938 21 14 5.6060 -7.8469 5.7636 22 1 5.0824 -6.6550 6.4784 23 1 5.1671 -9.0788 6.4671 24 1 7.0898 -7.7946 5.7360 25 1 -0.3634 -0.1143 1.0212 26 1 -0.3634 0.9417 -0.4116 27 1 -0.3634 -0.8273 -0.6097 28 1 1.6901 2.1415 0.0007 29 1 4.1722 2.0597 -0.0108 30 1 5.3114 -0.1252 -0.0103 31 1 3.1152 -3.6435 -0.1879 32 1 0.2704 -4.4371 -1.8534 33 1 1.7873 -5.3077 -2.1841 34 1 0.3897 -6.1790 -1.5083 35 1 1.8360 -6.9956 0.3013 36 1 3.2470 -6.0535 -0.2367 37 1 3.2522 -4.8296 1.9199 38 1 1.8412 -5.7716 2.4579 39 1 3.8755 -7.5751 1.6934 40 1 5.8757 -9.5429 3.4973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699091078.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:12 Heat of formation + Delta-G solvation = 1.695229 kcal Electronic energy + Delta-G solvation = -21000.197783 eV Core-core repulsion = 17814.945703 eV Total energy + Delta-G solvation = -3185.252080 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88780 -39.12487 -36.55802 -34.44426 -33.68841 -32.48013 -31.60905 -30.46690 -27.83318 -27.55139 -24.91955 -23.91110 -22.56136 -21.71366 -20.99506 -20.37999 -18.16267 -17.07620 -16.87076 -15.92623 -15.74365 -15.45301 -14.84719 -14.65339 -13.98156 -13.82597 -13.67491 -13.40705 -13.29654 -13.25551 -12.86945 -12.81421 -12.60979 -12.24388 -12.13035 -11.79021 -11.16743 -10.97915 -10.76019 -10.60389 -10.52119 -10.10963 -10.04684 -9.98040 -9.67015 -9.47395 -9.25487 -8.89473 -8.80029 -6.87918 -5.73213 -3.01434 0.48249 0.97366 2.71518 3.15767 3.45792 3.51436 3.53824 3.69973 4.04561 4.51184 4.56831 4.61363 4.68817 4.72258 4.99347 5.13905 5.27552 5.34350 5.40640 5.46849 5.59313 5.62136 5.75962 5.77486 5.80756 5.91658 5.97737 6.05120 6.13126 6.28426 6.33027 6.37883 6.42405 6.62712 6.88360 6.92545 7.44440 7.73549 7.74797 8.25589 8.46063 9.57120 10.15263 10.50227 11.49943 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.003882 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.257823 B = 7211.143797 C = 8154.025173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.075 4.075 3 C -0.089 4.089 4 C -0.148 4.148 5 C 0.091 3.909 6 N -0.451 5.451 7 C 0.074 3.926 8 C 0.570 3.430 9 O -0.534 6.534 10 N -0.697 5.697 11 C 0.143 3.857 12 H 0.090 0.910 13 C -0.160 4.160 14 C -0.135 4.135 15 C 0.153 3.847 16 N -0.734 5.734 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.292 1.292 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.163 0.837 31 H 0.412 0.588 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.020 0.980 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.792 19.886 -11.416 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.078 4.078 3 C -0.115 4.115 4 C -0.168 4.168 5 C -0.069 4.069 6 N -0.162 5.162 7 C -0.064 4.064 8 C 0.355 3.645 9 O -0.411 6.411 10 N -0.348 5.348 11 C 0.039 3.961 12 H 0.108 0.892 13 C -0.219 4.219 14 C -0.173 4.173 15 C 0.026 3.974 16 N -0.378 5.378 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.180 0.820 31 H 0.248 0.752 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.038 0.962 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.215 19.060 -11.162 23.236 hybrid contribution 0.787 0.634 0.811 1.296 sum -6.427 19.693 -10.351 23.157 Atomic orbital electron populations 1.21058 0.88988 1.03206 1.04087 1.20963 0.98446 0.92405 0.96005 1.21546 0.94182 0.98061 0.97723 1.22374 0.95279 0.99862 0.99288 1.22812 1.00601 0.87253 0.96252 1.67572 1.07081 1.32020 1.09494 1.21087 0.89891 0.93767 1.01646 1.17836 0.86572 0.83182 0.76903 1.90712 1.13132 1.86758 1.50539 1.46006 1.11770 1.05109 1.71886 1.21051 0.95590 0.82260 0.97241 0.89194 1.22161 1.01324 1.01925 0.96456 1.22058 0.99237 0.97597 0.98382 1.20642 0.93391 0.92382 0.91022 1.42368 1.56045 1.26818 1.12564 1.19286 1.22153 1.06457 0.88880 0.91228 1.24733 1.00732 0.97499 0.98131 1.69674 1.40212 1.13745 1.34717 0.86118 0.78449 0.77213 0.84458 1.20588 1.21858 1.21871 0.90291 0.92374 0.88197 0.84261 0.84293 0.81990 0.75192 0.92428 0.92471 0.91405 0.90160 0.91276 0.96182 0.96473 0.78326 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 8.74 36.00 0.31 -0.89 16 2 C -0.08 -0.85 5.93 -104.09 -0.62 -1.46 16 3 C -0.09 -0.76 9.83 -39.31 -0.39 -1.15 16 4 C -0.15 -1.16 10.11 -39.32 -0.40 -1.56 16 5 C 0.09 0.89 11.18 -17.56 -0.20 0.69 16 6 N -0.45 -5.82 9.56 -9.80 -0.09 -5.92 16 7 C 0.07 1.00 6.75 -83.01 -0.56 0.44 16 8 C 0.57 8.48 7.71 -12.18 -0.09 8.39 16 9 O -0.53 -8.64 12.97 5.35 0.07 -8.57 16 10 N -0.70 -9.99 4.52 -54.65 -0.25 -10.23 16 11 C 0.14 2.04 2.57 -67.93 -0.17 1.86 16 12 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 13 C -0.16 -1.93 9.48 37.16 0.35 -1.58 16 14 C -0.13 -2.17 4.87 -26.74 -0.13 -2.30 16 15 C 0.15 3.21 6.15 -4.05 -0.02 3.18 16 16 N -0.73 -19.18 5.60 -59.91 -0.34 -19.52 16 17 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 18 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 19 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 21 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.45 8.06 -51.93 -0.42 0.03 16 27 H 0.10 1.21 5.85 -51.93 -0.30 0.90 16 28 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 29 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 30 H 0.16 1.16 8.06 -52.48 -0.42 0.73 16 31 H 0.41 5.81 7.95 -40.82 -0.32 5.49 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.02 0.43 7.75 -51.93 -0.40 0.03 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.38 10.39 7.67 -40.82 -0.31 10.07 16 40 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -33.39 337.55 -7.91 -41.30 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.93 Total: 9.93 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -2.16 Total: -1.94 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: 0.05 Total: -63.68 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.07 Total: -8.57 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.39 -7.91 -41.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699091078.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.994 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds