Wall clock time and date at job start Mon Mar 30 2020 01:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38630 * 120.47324 * 2 1 4 4 C 1.38585 * 118.49049 * 180.28302 * 3 2 1 5 5 C 1.38600 * 119.34868 * 359.72729 * 4 3 2 6 6 N 1.31495 * 120.90423 * 0.02562 * 5 4 3 7 7 C 1.32737 * 121.64162 * 359.97438 * 6 5 4 8 8 C 1.48165 * 119.72562 * 180.02562 * 7 6 5 9 9 O 1.21514 * 120.00653 * 174.43366 * 8 7 6 10 10 N 1.34780 * 119.99712 * 354.43323 * 8 7 6 11 11 C 1.46508 * 120.00090 * 180.02562 * 10 8 7 12 12 H 1.08993 * 109.46888 * 325.00017 * 11 10 8 13 13 C 1.52995 * 109.46867 * 84.99945 * 11 10 8 14 14 C 1.52997 * 109.46971 * 205.00237 * 11 10 8 15 15 C 1.52990 * 109.47567 * 64.99830 * 14 11 10 16 16 N 1.46501 * 109.47499 * 179.97438 * 15 14 11 17 17 C 1.36936 * 119.99970 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00277 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99788 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99755 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00257 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.46920 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47673 * 119.99281 * 21 19 17 24 24 H 1.48498 * 109.47338 * 239.99833 * 21 19 17 25 25 H 1.08996 * 109.47394 * 263.61200 * 1 2 3 26 26 H 1.09004 * 109.47190 * 23.61118 * 1 2 3 27 27 H 1.09006 * 109.47310 * 143.60937 * 1 2 3 28 28 H 1.08002 * 120.75597 * 0.04206 * 3 2 1 29 29 H 1.08000 * 120.32644 * 179.71453 * 4 3 2 30 30 H 1.08009 * 119.54879 * 180.02562 * 5 4 3 31 31 H 0.96993 * 119.99971 * 0.02562 * 10 8 7 32 32 H 1.09004 * 109.47204 * 299.99967 * 13 11 10 33 33 H 1.09001 * 109.47102 * 60.00023 * 13 11 10 34 34 H 1.09002 * 109.47101 * 180.02562 * 13 11 10 35 35 H 1.09000 * 109.46926 * 185.00581 * 14 11 10 36 36 H 1.09002 * 109.46943 * 304.99473 * 14 11 10 37 37 H 1.09000 * 109.47611 * 300.00332 * 15 14 11 38 38 H 1.09002 * 109.47280 * 59.99849 * 15 14 11 39 39 H 0.97001 * 119.99916 * 0.02562 * 16 15 14 40 40 H 0.97002 * 119.99404 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5950 1.1469 -0.0060 5 6 4.2321 -0.0840 -0.0061 6 7 3.5406 -1.2024 -0.0010 7 6 2.2132 -1.2004 0.0049 8 6 1.4766 -2.4860 0.0110 9 8 0.2662 -2.4923 0.1184 10 7 2.1491 -3.6485 -0.1026 11 6 1.4207 -4.9197 -0.0971 12 1 0.5655 -4.8454 0.5745 13 6 0.9320 -5.2335 -1.5125 14 6 2.3494 -6.0374 0.3815 15 6 2.7388 -5.7878 1.8398 16 7 3.6276 -6.8584 2.2981 17 6 4.1083 -6.8473 3.5803 18 1 3.8326 -6.0491 4.2535 19 6 4.9508 -7.8615 4.0144 20 7 5.2872 -8.8340 3.1938 21 14 5.6060 -7.8469 5.7636 22 1 5.0824 -6.6550 6.4784 23 1 5.1671 -9.0788 6.4671 24 1 7.0898 -7.7946 5.7360 25 1 -0.3634 -0.1143 1.0212 26 1 -0.3634 0.9417 -0.4116 27 1 -0.3634 -0.8273 -0.6097 28 1 1.6901 2.1415 0.0007 29 1 4.1722 2.0597 -0.0108 30 1 5.3114 -0.1252 -0.0103 31 1 3.1152 -3.6435 -0.1879 32 1 0.2704 -4.4371 -1.8534 33 1 1.7873 -5.3077 -2.1841 34 1 0.3897 -6.1790 -1.5083 35 1 1.8360 -6.9956 0.3013 36 1 3.2470 -6.0535 -0.2367 37 1 3.2522 -4.8296 1.9199 38 1 1.8412 -5.7716 2.4579 39 1 3.8755 -7.5751 1.6934 40 1 5.8757 -9.5429 3.4973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699091078.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:12 Heat of formation + Delta-G solvation = -21.179119 kcal Electronic energy + Delta-G solvation = -21001.189689 eV Core-core repulsion = 17814.945703 eV Total energy + Delta-G solvation = -3186.243986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.78479 -40.14200 -37.91721 -36.19206 -34.61055 -33.63160 -33.08364 -31.81444 -29.44567 -28.36023 -26.02982 -25.57630 -23.56008 -23.10220 -22.23805 -21.55001 -19.40153 -18.88689 -17.84230 -16.99188 -16.74856 -16.48194 -16.40114 -15.81439 -15.50928 -15.28693 -15.09201 -14.73887 -14.52918 -14.27281 -14.02756 -13.71995 -13.59689 -13.31664 -13.07384 -12.93924 -12.91868 -12.80371 -12.38731 -12.24657 -12.02033 -11.95808 -11.65868 -11.05410 -10.97644 -10.77451 -10.38830 -10.22433 -9.86288 -9.03344 -7.97998 -5.27371 -0.33278 0.25072 1.45630 1.46645 1.56975 1.73168 2.11231 2.53752 2.85076 3.18625 3.35433 3.60380 3.77808 3.86577 3.97565 4.04004 4.05825 4.13718 4.36543 4.50793 4.53976 4.58069 4.62692 4.74304 4.78487 4.79276 4.85654 4.96108 5.10299 5.16441 5.19781 5.24511 5.29945 5.35966 5.45856 5.56799 5.70374 6.24686 6.42371 6.82788 7.15610 7.31023 8.05118 8.30638 9.25603 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.003882 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.257823 B = 7211.143797 C = 8154.025173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.087 4.087 3 C -0.086 4.086 4 C -0.130 4.130 5 C 0.077 3.923 6 N -0.481 5.481 7 C 0.040 3.960 8 C 0.564 3.436 9 O -0.556 6.556 10 N -0.698 5.698 11 C 0.149 3.851 12 H 0.075 0.925 13 C -0.151 4.151 14 C -0.118 4.118 15 C 0.155 3.845 16 N -0.745 5.745 17 C -0.250 4.250 18 H 0.069 0.931 19 C -0.072 4.072 20 N -0.967 5.967 21 Si 0.974 3.026 22 H -0.270 1.270 23 H -0.290 1.290 24 H -0.289 1.289 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.175 0.825 29 H 0.180 0.820 30 H 0.185 0.815 31 H 0.412 0.588 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.016 0.984 38 H 0.009 0.991 39 H 0.376 0.624 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.315 22.149 -11.551 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 C -0.112 4.112 4 C -0.150 4.150 5 C -0.083 4.083 6 N -0.192 5.192 7 C -0.096 4.096 8 C 0.350 3.650 9 O -0.436 6.436 10 N -0.349 5.349 11 C 0.045 3.955 12 H 0.093 0.907 13 C -0.209 4.209 14 C -0.156 4.156 15 C 0.029 3.971 16 N -0.388 5.388 17 C -0.382 4.382 18 H 0.087 0.913 19 C -0.264 4.264 20 N -0.617 5.617 21 Si 0.803 3.197 22 H -0.195 1.195 23 H -0.217 1.217 24 H -0.216 1.216 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.192 0.808 29 H 0.198 0.802 30 H 0.202 0.798 31 H 0.248 0.752 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.034 0.966 38 H 0.027 0.973 39 H 0.208 0.792 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.761 21.345 -11.305 25.083 hybrid contribution 0.662 0.046 0.838 1.070 sum -6.099 21.391 -10.467 24.583 Atomic orbital electron populations 1.20973 0.88810 1.03836 1.03199 1.21185 0.98837 0.92839 0.96149 1.21980 0.94681 0.98263 0.96245 1.22822 0.95281 1.00548 0.96339 1.23375 1.01752 0.87410 0.95774 1.67492 1.07049 1.33962 1.10681 1.20945 0.90466 0.93563 1.04657 1.18232 0.86545 0.83941 0.76277 1.90691 1.14008 1.87247 1.51613 1.46018 1.11728 1.05150 1.71995 1.20939 0.94476 0.81742 0.98371 0.90679 1.22075 1.01654 1.02422 0.94769 1.21896 0.99925 0.98652 0.95169 1.20727 0.91898 0.90710 0.93808 1.42548 1.56684 1.27742 1.11804 1.19625 1.22117 1.06386 0.90070 0.91315 1.25562 1.01321 0.97291 1.02240 1.69816 1.40960 1.14378 1.36580 0.85070 0.77602 0.77399 0.79658 1.19456 1.21669 1.21572 0.91263 0.89405 0.90474 0.80797 0.80226 0.79762 0.75182 0.92826 0.91531 0.90006 0.89543 0.90685 0.96648 0.97338 0.79165 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 8.74 71.23 0.62 -1.63 16 2 C -0.09 -1.88 5.93 -19.52 -0.12 -1.99 16 3 C -0.09 -1.21 9.83 22.45 0.22 -0.99 16 4 C -0.13 -1.59 10.11 22.44 0.23 -1.36 16 5 C 0.08 1.37 11.18 84.83 0.95 2.31 16 6 N -0.48 -12.30 9.56 -184.91 -1.77 -14.06 16 7 C 0.04 1.09 6.75 41.90 0.28 1.37 16 8 C 0.56 17.40 7.71 86.88 0.67 18.07 16 9 O -0.56 -18.82 12.97 -3.76 -0.05 -18.87 16 10 N -0.70 -20.59 4.52 -445.10 -2.01 -22.60 16 11 C 0.15 4.30 2.57 44.99 0.12 4.42 16 12 H 0.08 2.40 7.58 -2.39 -0.02 2.38 16 13 C -0.15 -3.55 9.48 71.98 0.68 -2.87 16 14 C -0.12 -3.83 4.87 30.59 0.15 -3.68 16 15 C 0.16 6.61 6.15 86.38 0.53 7.14 16 16 N -0.74 -39.53 5.60 -343.46 -1.92 -41.45 16 17 C -0.25 -14.62 9.99 84.03 0.84 -13.78 16 18 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 19 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 20 N -0.97 -59.95 13.06 21.65 0.28 -59.67 16 21 Si 0.97 47.15 29.55 68.60 2.03 49.18 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 25 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.09 1.18 8.06 -2.38 -0.02 1.16 16 27 H 0.08 1.93 5.85 -2.38 -0.01 1.91 16 28 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 29 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 30 H 0.19 2.21 8.06 -2.91 -0.02 2.18 16 31 H 0.41 11.98 7.95 -92.71 -0.74 11.25 16 32 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.02 0.68 7.75 -2.39 -0.02 0.66 16 38 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.38 20.74 7.67 -92.71 -0.71 20.03 16 40 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -73.10 337.55 1.80 -71.30 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: -0.40 Total: 32.91 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 5.64 Total: 3.26 kcal Atomic # 7 Polarization: -132.36 SS G_CDS: -5.42 Total: -137.78 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.05 Total: -18.87 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -73.10 1.80 -71.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699091078.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.120 kcal (2) G-P(sol) polarization free energy of solvation -73.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds