Wall clock time and date at job start Mon Mar 30 2020 01:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35451 * 125.55938 * 2 1 4 4 C 1.39839 * 107.86094 * 179.73568 * 3 2 1 5 5 C 1.37863 * 107.08624 * 359.97438 * 4 3 2 6 6 C 1.46680 * 126.23428 * 179.97438 * 5 4 3 7 7 O 1.21692 * 120.00355 * 175.01692 * 6 5 4 8 8 N 1.34783 * 119.99791 * 355.02415 * 6 5 4 9 9 C 1.46496 * 119.99769 * 185.08229 * 8 6 5 10 10 C 1.50707 * 109.47212 * 179.97438 * 9 8 6 11 11 C 1.30999 * 119.99536 * 124.99508 * 10 9 8 12 12 C 1.50704 * 119.99300 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.47144 * 125.00236 * 12 11 10 14 14 C 1.36932 * 120.00322 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00112 * 0.02562 * 14 13 12 16 16 C 1.38806 * 120.00156 * 180.02562 * 14 13 12 17 17 N 1.31616 * 120.00210 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99977 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47276 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46896 * 120.00001 * 18 16 14 21 21 H 1.48499 * 109.47242 * 239.99822 * 18 16 14 22 22 N 1.35529 * 125.56681 * 179.69091 * 2 1 3 23 23 C 1.46503 * 125.67724 * 0.24086 * 22 2 1 24 24 H 1.09006 * 109.46765 * 90.02622 * 1 2 3 25 25 H 1.08993 * 109.46968 * 210.02378 * 1 2 3 26 26 H 1.08997 * 109.47483 * 330.03006 * 1 2 3 27 27 H 1.07999 * 126.07095 * 359.70988 * 3 2 1 28 28 H 1.08005 * 126.45244 * 180.02562 * 4 3 2 29 29 H 0.97002 * 119.99957 * 5.07432 * 8 6 5 30 30 H 1.08997 * 109.47118 * 299.99759 * 9 8 6 31 31 H 1.08998 * 109.47504 * 59.99756 * 9 8 6 32 32 H 1.07996 * 119.99828 * 305.00133 * 10 9 8 33 33 H 1.07996 * 120.00636 * 0.02562 * 11 10 9 34 34 H 1.08997 * 109.47209 * 245.00006 * 12 11 10 35 35 H 1.08999 * 109.47299 * 5.00323 * 12 11 10 36 36 H 0.97008 * 119.99832 * 0.02562 * 13 12 11 37 37 H 0.97002 * 120.00123 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.46751 * 95.47720 * 23 22 2 39 39 H 1.08992 * 109.47363 * 215.47909 * 23 22 2 40 40 H 1.08998 * 109.47157 * 335.48174 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2947 1.1019 0.0000 4 6 3.6269 0.6768 0.0061 5 6 3.6122 -0.7017 0.0104 6 6 4.7860 -1.5813 0.0168 7 8 4.6431 -2.7861 0.1116 8 7 6.0229 -1.0552 -0.0821 9 6 7.1878 -1.9372 -0.1879 10 6 8.4406 -1.1053 -0.2860 11 6 9.4205 -1.2945 0.5626 12 6 10.6730 -0.4622 0.4648 13 7 10.9280 0.1897 1.7518 14 6 12.0198 1.0020 1.9035 15 1 12.6929 1.1625 1.0742 16 6 12.2616 1.6192 3.1230 17 7 11.4417 1.4232 4.1338 18 14 13.7516 2.7268 3.3302 19 1 14.5091 2.7813 2.0541 20 1 13.3044 4.0941 3.6986 21 1 14.6252 2.1860 4.4023 22 7 2.2953 -1.1024 0.0059 23 6 1.8243 -2.4897 0.0084 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3634 0.8902 0.5133 27 1 1.9544 2.1269 -0.0044 28 1 4.5024 1.3093 0.0081 29 1 6.1418 -0.0925 -0.0834 30 1 7.2425 -2.5743 0.6949 31 1 7.0937 -2.5582 -1.0787 32 1 8.5304 -0.3533 -1.0559 33 1 9.3308 -2.0468 1.3322 34 1 11.5164 -1.1036 0.2090 35 1 10.5459 0.2962 -0.3077 36 1 10.3237 0.0452 2.4967 37 1 11.6105 1.8548 4.9860 38 1 1.8039 -2.8682 -1.0135 39 1 2.4978 -3.1010 0.6089 40 1 0.8207 -2.5318 0.4316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699233419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:52 Heat of formation + Delta-G solvation = 35.184924 kcal Electronic energy + Delta-G solvation = -20090.455519 eV Core-core repulsion = 16906.655661 eV Total energy + Delta-G solvation = -3183.799858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.62159 -39.17081 -36.26651 -34.77424 -33.30177 -32.64607 -31.94231 -30.56246 -27.93816 -26.68696 -26.18468 -24.05200 -22.27186 -21.76679 -20.45044 -19.76604 -19.11155 -17.81737 -17.09588 -16.09427 -15.95522 -15.47518 -15.07001 -14.67885 -14.33484 -13.83185 -13.77978 -13.52184 -13.49579 -13.27279 -13.22069 -13.00405 -12.80444 -12.28302 -12.14146 -12.02787 -11.99286 -11.83311 -11.03860 -10.83932 -10.62253 -10.13035 -10.03827 -9.80920 -9.28159 -9.01588 -8.91387 -8.73660 -8.20645 -6.95030 -5.78102 -3.07783 1.32632 2.19247 2.51915 2.58953 3.31647 3.42846 3.46905 3.48589 3.50820 4.52652 4.56566 4.59156 4.68448 4.83034 4.98584 4.98889 5.17674 5.25602 5.26950 5.32071 5.39192 5.53190 5.54935 5.59934 5.79049 5.91892 5.98446 6.02217 6.13209 6.32006 6.47144 6.56774 6.64182 6.82411 6.90129 7.01550 7.14320 7.47761 7.68597 8.13278 8.40091 9.51494 10.07783 10.43002 11.44648 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025083 B = 0.002697 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.016000 B =10378.251286 C =11103.272682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.038 3.962 3 C -0.205 4.205 4 C -0.135 4.135 5 C -0.053 4.053 6 C 0.588 3.412 7 O -0.556 6.556 8 N -0.711 5.711 9 C 0.159 3.841 10 C -0.202 4.202 11 C -0.105 4.105 12 C 0.172 3.828 13 N -0.730 5.730 14 C -0.242 4.242 15 H 0.072 0.928 16 C -0.014 4.014 17 N -0.932 5.932 18 Si 0.909 3.091 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 N -0.408 5.408 23 C 0.066 3.934 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.406 0.594 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.031 0.969 35 H 0.026 0.974 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.341 -4.797 -10.793 25.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 C -0.229 4.229 4 C -0.162 4.162 5 C -0.166 4.166 6 C 0.376 3.624 7 O -0.437 6.437 8 N -0.362 5.362 9 C 0.036 3.964 10 C -0.222 4.222 11 C -0.124 4.124 12 C 0.045 3.955 13 N -0.374 5.374 14 C -0.373 4.373 15 H 0.090 0.910 16 C -0.210 4.210 17 N -0.580 5.580 18 Si 0.740 3.260 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 N -0.082 5.082 23 C -0.075 4.075 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.160 0.840 28 H 0.164 0.836 29 H 0.241 0.759 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.120 0.880 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.358 -5.973 -10.785 25.532 hybrid contribution 0.719 1.056 0.454 1.355 sum -21.639 -4.917 -10.331 24.477 Atomic orbital electron populations 1.20386 0.87811 1.03423 1.02806 1.20565 0.93753 0.85890 1.07683 1.20624 0.92457 0.97782 1.12065 1.21399 0.98061 0.91979 1.04737 1.19998 0.84251 0.93591 1.18795 1.16975 0.82364 0.86733 0.76301 1.90765 1.86448 1.15016 1.51433 1.45694 1.05114 1.11117 1.74257 1.20326 0.82155 0.91779 1.02101 1.22682 0.94700 1.02592 1.02204 1.23346 0.95800 0.97323 0.95947 1.19830 0.92045 0.93114 0.90487 1.42309 1.30589 1.55859 1.08668 1.19285 1.01523 1.19970 0.96485 0.91010 1.24771 0.99108 1.01070 0.96052 1.69677 1.38235 1.47743 1.02384 0.86093 0.82189 0.80239 0.77518 1.20509 1.21802 1.21811 1.43726 1.04630 1.06548 1.53305 1.22221 1.01363 0.79774 1.04105 0.90782 0.91666 0.89810 0.83995 0.83610 0.75852 0.91012 0.91041 0.86638 0.87241 0.95129 0.95614 0.78121 0.93490 0.90698 0.88024 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.51 10.07 36.01 0.36 -0.15 16 2 C 0.04 0.37 6.87 -81.95 -0.56 -0.19 16 3 C -0.21 -2.11 10.71 -39.98 -0.43 -2.54 16 4 C -0.14 -1.54 10.35 -39.12 -0.41 -1.94 16 5 C -0.05 -0.68 6.88 -81.98 -0.56 -1.25 16 6 C 0.59 8.34 7.77 -12.85 -0.10 8.24 16 7 O -0.56 -9.16 14.78 5.20 0.08 -9.09 16 8 N -0.71 -9.01 5.53 -62.80 -0.35 -9.36 16 9 C 0.16 2.06 6.12 -5.19 -0.03 2.03 16 10 C -0.20 -2.77 9.24 -36.02 -0.33 -3.10 16 11 C -0.10 -1.71 9.24 -36.02 -0.33 -2.04 16 12 C 0.17 3.45 6.70 -5.19 -0.03 3.42 16 13 N -0.73 -18.69 5.59 -61.09 -0.34 -19.03 16 14 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 15 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 16 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 17 N -0.93 -28.39 13.06 55.49 0.72 -27.66 16 18 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 N -0.41 -4.61 3.16 -115.62 -0.37 -4.98 16 23 C 0.07 0.59 10.33 59.85 0.62 1.21 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.32 6.91 -51.93 -0.36 -0.03 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 28 H 0.15 1.39 7.45 -52.48 -0.39 1.00 16 29 H 0.41 4.50 7.36 -40.82 -0.30 4.20 16 30 H 0.07 1.00 7.79 -51.93 -0.40 0.59 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.12 1.49 7.84 -52.49 -0.41 1.07 16 33 H 0.11 1.75 7.84 -52.49 -0.41 1.34 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.03 0.51 7.79 -51.93 -0.40 0.11 16 36 H 0.39 10.40 7.66 -40.82 -0.31 10.08 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 1.09 6.53 -51.93 -0.34 0.75 16 40 H 0.08 0.49 6.80 -51.93 -0.35 0.14 16 LS Contribution 341.66 15.07 5.15 5.15 Total: -1.00 -33.81 341.66 -7.96 -41.77 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.77 Total: 9.58 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -2.06 Total: -3.78 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.33 Total: -61.04 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.81 -7.96 -41.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699233419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.956 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds