Wall clock time and date at job start Mon Mar 30 2020 01:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35451 * 125.55938 * 2 1 4 4 C 1.39839 * 107.86094 * 179.73568 * 3 2 1 5 5 C 1.37863 * 107.08624 * 359.97438 * 4 3 2 6 6 C 1.46680 * 126.23428 * 179.97438 * 5 4 3 7 7 O 1.21692 * 120.00355 * 175.01692 * 6 5 4 8 8 N 1.34783 * 119.99791 * 355.02415 * 6 5 4 9 9 C 1.46496 * 119.99769 * 185.08229 * 8 6 5 10 10 C 1.50707 * 109.47212 * 179.97438 * 9 8 6 11 11 C 1.30999 * 119.99536 * 124.99508 * 10 9 8 12 12 C 1.50704 * 119.99300 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.47144 * 125.00236 * 12 11 10 14 14 C 1.36932 * 120.00322 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00112 * 0.02562 * 14 13 12 16 16 C 1.38806 * 120.00156 * 180.02562 * 14 13 12 17 17 N 1.31616 * 120.00210 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99977 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47276 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46896 * 120.00001 * 18 16 14 21 21 H 1.48499 * 109.47242 * 239.99822 * 18 16 14 22 22 N 1.35529 * 125.56681 * 179.69091 * 2 1 3 23 23 C 1.46503 * 125.67724 * 0.24086 * 22 2 1 24 24 H 1.09006 * 109.46765 * 90.02622 * 1 2 3 25 25 H 1.08993 * 109.46968 * 210.02378 * 1 2 3 26 26 H 1.08997 * 109.47483 * 330.03006 * 1 2 3 27 27 H 1.07999 * 126.07095 * 359.70988 * 3 2 1 28 28 H 1.08005 * 126.45244 * 180.02562 * 4 3 2 29 29 H 0.97002 * 119.99957 * 5.07432 * 8 6 5 30 30 H 1.08997 * 109.47118 * 299.99759 * 9 8 6 31 31 H 1.08998 * 109.47504 * 59.99756 * 9 8 6 32 32 H 1.07996 * 119.99828 * 305.00133 * 10 9 8 33 33 H 1.07996 * 120.00636 * 0.02562 * 11 10 9 34 34 H 1.08997 * 109.47209 * 245.00006 * 12 11 10 35 35 H 1.08999 * 109.47299 * 5.00323 * 12 11 10 36 36 H 0.97008 * 119.99832 * 0.02562 * 13 12 11 37 37 H 0.97002 * 120.00123 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.46751 * 95.47720 * 23 22 2 39 39 H 1.08992 * 109.47363 * 215.47909 * 23 22 2 40 40 H 1.08998 * 109.47157 * 335.48174 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2947 1.1019 0.0000 4 6 3.6269 0.6768 0.0061 5 6 3.6122 -0.7017 0.0104 6 6 4.7860 -1.5813 0.0168 7 8 4.6431 -2.7861 0.1116 8 7 6.0229 -1.0552 -0.0821 9 6 7.1878 -1.9372 -0.1879 10 6 8.4406 -1.1053 -0.2860 11 6 9.4205 -1.2945 0.5626 12 6 10.6730 -0.4622 0.4648 13 7 10.9280 0.1897 1.7518 14 6 12.0198 1.0020 1.9035 15 1 12.6929 1.1625 1.0742 16 6 12.2616 1.6192 3.1230 17 7 11.4417 1.4232 4.1338 18 14 13.7516 2.7268 3.3302 19 1 14.5091 2.7813 2.0541 20 1 13.3044 4.0941 3.6986 21 1 14.6252 2.1860 4.4023 22 7 2.2953 -1.1024 0.0059 23 6 1.8243 -2.4897 0.0084 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3634 0.8902 0.5133 27 1 1.9544 2.1269 -0.0044 28 1 4.5024 1.3093 0.0081 29 1 6.1418 -0.0925 -0.0834 30 1 7.2425 -2.5743 0.6949 31 1 7.0937 -2.5582 -1.0787 32 1 8.5304 -0.3533 -1.0559 33 1 9.3308 -2.0468 1.3322 34 1 11.5164 -1.1036 0.2090 35 1 10.5459 0.2962 -0.3077 36 1 10.3237 0.0452 2.4967 37 1 11.6105 1.8548 4.9860 38 1 1.8039 -2.8682 -1.0135 39 1 2.4978 -3.1010 0.6089 40 1 0.8207 -2.5318 0.4316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699233419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:51 Heat of formation + Delta-G solvation = 12.668467 kcal Electronic energy + Delta-G solvation = -20091.431905 eV Core-core repulsion = 16906.655661 eV Total energy + Delta-G solvation = -3184.776245 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.43826 -40.22701 -37.67281 -36.28292 -34.61047 -33.72291 -32.79786 -32.20281 -29.16905 -27.43910 -27.34421 -25.66416 -23.73265 -22.91740 -21.41082 -20.87563 -20.06673 -19.14004 -18.72240 -17.14537 -16.90679 -16.73833 -16.30709 -16.04474 -15.49561 -15.27353 -15.14363 -14.91804 -14.43859 -14.25587 -14.15981 -13.90308 -13.57330 -13.50238 -13.34356 -12.97050 -12.90131 -12.84598 -12.75628 -12.60820 -12.15276 -11.99149 -11.78246 -11.23858 -11.03278 -10.41564 -10.04548 -9.71704 -9.02247 -9.01316 -7.96187 -5.26270 0.42012 1.00954 1.48482 1.49353 1.59694 1.72104 1.74625 2.33043 2.49427 2.57133 3.37836 3.68559 3.78515 3.91742 3.94187 4.08603 4.23195 4.25567 4.31960 4.45067 4.51555 4.60910 4.64035 4.69769 4.76325 4.81317 4.92255 5.00288 5.09524 5.16813 5.23403 5.28595 5.47912 5.64803 5.82236 5.85362 6.00030 6.25943 6.29394 6.47170 7.09519 7.31890 8.05927 8.29740 9.27566 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025083 B = 0.002697 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.016000 B =10378.251286 C =11103.272682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.046 3.954 3 C -0.223 4.223 4 C -0.135 4.135 5 C -0.092 4.092 6 C 0.585 3.415 7 O -0.588 6.588 8 N -0.706 5.706 9 C 0.162 3.838 10 C -0.162 4.162 11 C -0.129 4.129 12 C 0.173 3.827 13 N -0.745 5.745 14 C -0.247 4.247 15 H 0.079 0.921 16 C -0.077 4.077 17 N -0.970 5.970 18 Si 0.977 3.023 19 H -0.264 1.264 20 H -0.292 1.292 21 H -0.293 1.293 22 N -0.418 5.418 23 C 0.065 3.935 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.162 0.838 28 H 0.158 0.842 29 H 0.414 0.586 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.108 0.892 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.374 0.626 37 H 0.252 0.748 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.593 -3.928 -12.059 26.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C -0.247 4.247 4 C -0.162 4.162 5 C -0.204 4.204 6 C 0.375 3.625 7 O -0.471 6.471 8 N -0.357 5.357 9 C 0.039 3.961 10 C -0.181 4.181 11 C -0.149 4.149 12 C 0.047 3.953 13 N -0.388 5.388 14 C -0.379 4.379 15 H 0.097 0.903 16 C -0.270 4.270 17 N -0.621 5.621 18 Si 0.805 3.195 19 H -0.188 1.188 20 H -0.219 1.219 21 H -0.220 1.220 22 N -0.092 5.092 23 C -0.076 4.076 24 H 0.107 0.893 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.180 0.820 28 H 0.175 0.825 29 H 0.251 0.749 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.150 0.850 33 H 0.126 0.874 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.206 0.794 37 H 0.061 0.939 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -23.594 -5.105 -12.102 27.003 hybrid contribution 0.982 0.769 0.750 1.455 sum -22.611 -4.336 -11.352 25.670 Atomic orbital electron populations 1.20547 0.84910 1.04785 1.04117 1.21273 0.95541 0.85241 1.05164 1.20989 0.92078 0.99075 1.12527 1.21698 0.99270 0.91630 1.03604 1.19962 0.84639 0.93996 1.21780 1.17241 0.83028 0.86565 0.75700 1.90740 1.86908 1.16298 1.53116 1.45601 1.04701 1.11476 1.73914 1.20258 0.81936 0.91703 1.02217 1.22755 0.93576 1.01170 1.00634 1.23019 0.95538 0.98431 0.97904 1.19917 0.93837 0.93332 0.88165 1.42551 1.29847 1.56028 1.10350 1.19712 1.02047 1.19500 0.96615 0.90299 1.25634 1.02210 1.03150 0.95957 1.69836 1.40249 1.49258 1.02742 0.85026 0.78762 0.77904 0.77767 1.18834 1.21882 1.22049 1.43987 1.04358 1.07611 1.53209 1.22303 1.02320 0.78665 1.04267 0.89347 0.90455 0.88321 0.82010 0.82492 0.74919 0.92049 0.89907 0.85031 0.87439 0.95075 0.94772 0.79440 0.93944 0.90209 0.90278 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 10.07 71.24 0.72 -0.03 16 2 C 0.05 0.80 6.87 41.34 0.28 1.08 16 3 C -0.22 -4.19 10.71 22.01 0.24 -3.95 16 4 C -0.14 -2.95 10.35 22.57 0.23 -2.71 16 5 C -0.09 -2.32 6.88 40.35 0.28 -2.04 16 6 C 0.58 16.66 7.77 86.45 0.67 17.34 16 7 O -0.59 -19.77 14.78 -4.32 -0.06 -19.83 16 8 N -0.71 -17.52 5.53 -470.81 -2.61 -20.12 16 9 C 0.16 4.06 6.12 85.64 0.52 4.58 16 10 C -0.16 -4.20 9.24 25.65 0.24 -3.97 16 11 C -0.13 -4.15 9.24 25.65 0.24 -3.92 16 12 C 0.17 6.86 6.70 85.63 0.57 7.43 16 13 N -0.75 -38.39 5.59 -347.18 -1.94 -40.34 16 14 C -0.25 -13.90 9.99 84.03 0.84 -13.06 16 15 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 16 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 17 N -0.97 -60.00 13.06 21.65 0.28 -59.72 16 18 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 22 N -0.42 -9.03 3.16 -519.72 -1.64 -10.67 16 23 C 0.07 1.11 10.33 127.77 1.32 2.43 16 24 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 25 H 0.08 0.51 6.91 -2.39 -0.02 0.49 16 26 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 28 H 0.16 2.84 7.45 -2.91 -0.02 2.81 16 29 H 0.41 8.80 7.36 -92.71 -0.68 8.11 16 30 H 0.06 1.71 7.79 -2.39 -0.02 1.69 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.13 3.05 7.84 -2.91 -0.02 3.02 16 33 H 0.11 3.49 7.84 -2.91 -0.02 3.46 16 34 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.03 1.30 7.79 -2.39 -0.02 1.29 16 36 H 0.37 20.60 7.66 -92.70 -0.71 19.89 16 37 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.73 6.53 -2.39 -0.02 1.72 16 40 H 0.11 1.13 6.80 -2.39 -0.02 1.11 16 Total: -1.00 -72.96 341.66 2.33 -70.62 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: -0.34 Total: 32.69 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 6.62 Total: -0.83 kcal Atomic # 7 Polarization: -124.94 SS G_CDS: -5.91 Total: -130.84 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.06 Total: -19.83 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -72.96 2.33 -70.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699233419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.293 kcal (2) G-P(sol) polarization free energy of solvation -72.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds