Wall clock time and date at job start Mon Mar 30 2020 02:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38224 * 120.42492 * 2 1 4 4 N 1.31851 * 120.76573 * 180.02562 * 3 2 1 5 5 C 1.31881 * 121.73032 * 359.97438 * 4 3 2 6 6 C 1.38191 * 120.76193 * 359.74122 * 5 4 3 7 7 C 1.38627 * 120.41894 * 180.02562 * 2 1 3 8 8 C 1.50701 * 120.78603 * 359.95649 * 7 2 1 9 9 C 1.50703 * 109.47355 * 85.00006 * 8 7 2 10 10 O 1.21283 * 119.99488 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00290 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27728 * 11 9 8 13 13 H 1.08995 * 109.47013 * 324.72129 * 12 11 9 14 14 C 1.52999 * 109.47257 * 84.72116 * 12 11 9 15 15 C 1.53004 * 109.47065 * 204.72115 * 12 11 9 16 16 N 1.46502 * 109.46925 * 55.00022 * 15 12 11 17 17 C 1.36936 * 119.99899 * 180.02562 * 16 15 12 18 18 H 1.07997 * 119.99841 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99864 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99976 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47135 * 89.99872 * 21 19 17 23 23 H 1.48502 * 109.47031 * 210.00069 * 21 19 17 24 24 H 1.48501 * 109.47093 * 329.99888 * 21 19 17 25 25 H 1.09004 * 109.47109 * 269.98316 * 1 2 3 26 26 H 1.09009 * 109.46621 * 29.97630 * 1 2 3 27 27 H 1.08995 * 109.47624 * 149.97977 * 1 2 3 28 28 H 1.08003 * 119.61485 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.62194 * 179.97438 * 5 4 3 30 30 H 1.07994 * 120.42060 * 180.26069 * 6 5 4 31 31 H 1.08998 * 109.47477 * 324.99852 * 8 7 2 32 32 H 1.09002 * 109.47412 * 205.00110 * 8 7 2 33 33 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 34 34 H 1.08996 * 109.47245 * 299.99926 * 14 12 11 35 35 H 1.08995 * 109.47098 * 60.00065 * 14 12 11 36 36 H 1.09003 * 109.47054 * 179.97438 * 14 12 11 37 37 H 1.08997 * 109.47038 * 174.99692 * 15 12 11 38 38 H 1.08999 * 109.47047 * 295.00318 * 15 12 11 39 39 H 0.96997 * 120.00059 * 359.97438 * 16 15 12 40 40 H 0.97004 * 119.99658 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.1919 0.0000 4 7 3.5254 1.1997 -0.0005 5 6 4.2257 0.0822 -0.0005 6 6 3.5947 -1.1473 0.0053 7 6 2.2089 -1.1954 -0.0005 8 6 1.4830 -2.5161 -0.0001 9 6 1.1315 -2.8967 -1.4153 10 8 1.4398 -2.1670 -2.3338 11 7 0.4739 -4.0473 -1.6603 12 6 0.1376 -4.4200 -3.0366 13 1 -0.1022 -3.5232 -3.6076 14 6 1.3313 -5.1297 -3.6789 15 6 -1.0706 -5.3587 -3.0300 16 7 -2.1775 -4.7249 -2.3095 17 6 -3.3712 -5.3819 -2.1731 18 1 -3.4967 -6.3672 -2.5970 19 6 -4.4198 -4.7815 -1.4899 20 7 -4.2666 -3.5809 -0.9728 21 14 -6.0484 -5.6776 -1.3044 22 1 -6.0288 -6.4875 -0.0599 23 1 -7.1528 -4.6874 -1.2335 24 1 -6.2581 -6.5701 -2.4726 25 1 -0.3633 -0.0003 1.0277 26 1 -0.3633 0.8903 -0.5135 27 1 -0.3634 -0.8897 -0.5141 28 1 1.6676 2.1276 0.0004 29 1 5.3047 0.1283 -0.0014 30 1 4.1736 -2.0589 0.0095 31 1 0.5707 -2.4291 0.5899 32 1 2.1244 -3.2832 0.4337 33 1 0.2270 -4.6306 -0.9257 34 1 2.1920 -4.4610 -3.6836 35 1 1.5711 -6.0265 -3.1078 36 1 1.0809 -5.4074 -4.7028 37 1 -1.3758 -5.5653 -4.0558 38 1 -0.8026 -6.2924 -2.5356 39 1 -2.0646 -3.8401 -1.9284 40 1 -4.9996 -3.1612 -0.4957 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699403524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:19 Heat of formation + Delta-G solvation = -3.736503 kcal Electronic energy + Delta-G solvation = -21329.769556 eV Core-core repulsion = 18144.281939 eV Total energy + Delta-G solvation = -3185.487617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.53592 -39.26458 -36.27263 -34.27462 -33.67013 -32.41948 -31.44278 -30.10667 -28.48700 -26.98349 -25.71604 -23.15368 -22.63774 -21.95032 -20.70199 -20.06391 -17.37448 -16.81945 -16.75616 -16.58241 -15.62401 -15.09537 -14.86631 -14.65840 -14.21869 -13.73657 -13.53415 -13.37815 -13.31189 -12.80016 -12.63982 -12.54898 -12.36579 -12.24825 -12.14515 -11.86718 -11.61502 -11.32072 -10.94523 -10.87975 -10.50247 -10.10320 -9.84618 -9.79637 -9.44197 -9.33335 -8.97147 -8.83600 -8.73487 -7.01856 -5.84062 -3.13641 1.16602 1.24791 2.87421 3.38133 3.43135 3.44641 3.45847 3.88094 4.45051 4.52416 4.53559 4.70814 4.97288 5.02679 5.03611 5.25669 5.31240 5.41036 5.46890 5.48165 5.49302 5.61374 5.68757 5.73606 5.84755 5.97848 6.02190 6.05785 6.14348 6.22441 6.35312 6.39268 6.43799 6.65460 6.74575 6.90662 7.62960 7.81648 7.99185 8.34101 8.49725 9.46176 10.01501 10.37223 11.38335 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020651 B = 0.004270 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.559649 B = 6555.911991 C = 7598.283567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.114 4.114 3 C 0.095 3.905 4 N -0.487 5.487 5 C 0.086 3.914 6 C -0.159 4.159 7 C -0.019 4.019 8 C -0.110 4.110 9 C 0.518 3.482 10 O -0.540 6.540 11 N -0.710 5.710 12 C 0.134 3.866 13 H 0.086 0.914 14 C -0.157 4.157 15 C 0.144 3.856 16 N -0.732 5.732 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.131 0.869 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.404 0.596 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.033 0.967 38 H 0.024 0.976 39 H 0.386 0.614 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.650 2.375 3.385 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.116 4.116 3 C -0.062 4.062 4 N -0.195 5.195 5 C -0.071 4.071 6 C -0.178 4.178 7 C -0.027 4.027 8 C -0.150 4.150 9 C 0.304 3.696 10 O -0.418 6.418 11 N -0.362 5.362 12 C 0.029 3.971 13 H 0.104 0.896 14 C -0.216 4.216 15 C 0.016 3.984 16 N -0.376 5.376 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.171 0.829 29 H 0.169 0.831 30 H 0.149 0.851 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.239 0.761 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.042 0.958 39 H 0.220 0.780 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.170 3.574 2.688 15.815 hybrid contribution -1.506 -1.368 0.572 2.114 sum 13.664 2.206 3.260 14.219 Atomic orbital electron populations 1.20791 0.89763 1.04107 1.02601 1.20825 0.97811 0.93480 0.99503 1.22606 0.89839 0.97353 0.96390 1.67607 1.08396 1.31453 1.12051 1.22601 1.00066 0.87687 0.96707 1.21957 0.94346 0.99653 1.01885 1.19582 0.93399 0.93919 0.95798 1.20739 1.02689 0.95290 0.96254 1.20232 0.77883 0.81106 0.90417 1.90710 1.53735 1.51171 1.46140 1.45984 1.57811 1.22520 1.09854 1.21234 0.94455 0.99084 0.82328 0.89600 1.22097 0.98328 1.00348 1.00824 1.20984 0.86931 0.93967 0.96507 1.42347 1.09753 1.20054 1.65495 1.19221 0.89597 0.99510 1.29151 0.91149 1.24735 0.98350 0.96728 1.00887 1.69660 1.32220 1.14600 1.41455 0.86193 0.83706 0.78486 0.77794 1.21705 1.21744 1.20756 0.90657 0.90988 0.90656 0.82934 0.83071 0.85116 0.86995 0.87839 0.76097 0.92506 0.92593 0.91675 0.94896 0.95780 0.78028 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 9.30 36.00 0.33 -1.15 16 2 C -0.11 -1.54 5.90 -104.48 -0.62 -2.16 16 3 C 0.10 1.25 10.86 -17.55 -0.19 1.06 16 4 N -0.49 -6.73 10.36 -13.25 -0.14 -6.87 16 5 C 0.09 1.04 11.18 -17.55 -0.20 0.84 16 6 C -0.16 -1.87 9.80 -39.44 -0.39 -2.26 16 7 C -0.02 -0.24 4.41 -104.32 -0.46 -0.70 16 8 C -0.11 -1.32 5.19 -29.03 -0.15 -1.47 16 9 C 0.52 7.97 7.11 -10.98 -0.08 7.89 16 10 O -0.54 -10.24 15.70 5.55 0.09 -10.15 16 11 N -0.71 -10.69 4.52 -53.81 -0.24 -10.94 16 12 C 0.13 2.18 2.73 -67.93 -0.19 1.99 16 13 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 14 C -0.16 -2.10 9.48 37.16 0.35 -1.75 16 15 C 0.14 2.71 5.82 -4.04 -0.02 2.69 16 16 N -0.73 -17.56 5.43 -59.91 -0.33 -17.88 16 17 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.10 13.06 55.49 0.72 -26.37 16 21 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.86 8.09 -51.92 -0.42 0.44 16 27 H 0.07 1.14 6.35 -51.93 -0.33 0.81 16 28 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 29 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.11 1.28 7.11 -51.93 -0.37 0.91 16 32 H 0.10 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.40 5.64 8.60 -40.82 -0.35 5.29 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.39 9.82 7.33 -40.82 -0.30 9.52 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 339.52 15.07 5.12 5.12 Total: -1.00 -32.67 339.52 -7.58 -40.25 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -5.93 Total: 12.23 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.85 Total: -2.12 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 0.02 Total: -62.06 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.67 -7.58 -40.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699403524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.517 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds