Wall clock time and date at job start Mon Mar 30 2020 02:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38224 * 120.42492 * 2 1 4 4 N 1.31851 * 120.76573 * 180.02562 * 3 2 1 5 5 C 1.31881 * 121.73032 * 359.97438 * 4 3 2 6 6 C 1.38191 * 120.76193 * 359.74122 * 5 4 3 7 7 C 1.38627 * 120.41894 * 180.02562 * 2 1 3 8 8 C 1.50701 * 120.78603 * 359.95649 * 7 2 1 9 9 C 1.50703 * 109.47355 * 85.00006 * 8 7 2 10 10 O 1.21283 * 119.99488 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00290 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27728 * 11 9 8 13 13 H 1.08995 * 109.47013 * 324.72129 * 12 11 9 14 14 C 1.52999 * 109.47257 * 84.72116 * 12 11 9 15 15 C 1.53004 * 109.47065 * 204.72115 * 12 11 9 16 16 N 1.46502 * 109.46925 * 55.00022 * 15 12 11 17 17 C 1.36936 * 119.99899 * 180.02562 * 16 15 12 18 18 H 1.07997 * 119.99841 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99864 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99976 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47135 * 89.99872 * 21 19 17 23 23 H 1.48502 * 109.47031 * 210.00069 * 21 19 17 24 24 H 1.48501 * 109.47093 * 329.99888 * 21 19 17 25 25 H 1.09004 * 109.47109 * 269.98316 * 1 2 3 26 26 H 1.09009 * 109.46621 * 29.97630 * 1 2 3 27 27 H 1.08995 * 109.47624 * 149.97977 * 1 2 3 28 28 H 1.08003 * 119.61485 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.62194 * 179.97438 * 5 4 3 30 30 H 1.07994 * 120.42060 * 180.26069 * 6 5 4 31 31 H 1.08998 * 109.47477 * 324.99852 * 8 7 2 32 32 H 1.09002 * 109.47412 * 205.00110 * 8 7 2 33 33 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 34 34 H 1.08996 * 109.47245 * 299.99926 * 14 12 11 35 35 H 1.08995 * 109.47098 * 60.00065 * 14 12 11 36 36 H 1.09003 * 109.47054 * 179.97438 * 14 12 11 37 37 H 1.08997 * 109.47038 * 174.99692 * 15 12 11 38 38 H 1.08999 * 109.47047 * 295.00318 * 15 12 11 39 39 H 0.96997 * 120.00059 * 359.97438 * 16 15 12 40 40 H 0.97004 * 119.99658 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.1919 0.0000 4 7 3.5254 1.1997 -0.0005 5 6 4.2257 0.0822 -0.0005 6 6 3.5947 -1.1473 0.0053 7 6 2.2089 -1.1954 -0.0005 8 6 1.4830 -2.5161 -0.0001 9 6 1.1315 -2.8967 -1.4153 10 8 1.4398 -2.1670 -2.3338 11 7 0.4739 -4.0473 -1.6603 12 6 0.1376 -4.4200 -3.0366 13 1 -0.1022 -3.5232 -3.6076 14 6 1.3313 -5.1297 -3.6789 15 6 -1.0706 -5.3587 -3.0300 16 7 -2.1775 -4.7249 -2.3095 17 6 -3.3712 -5.3819 -2.1731 18 1 -3.4967 -6.3672 -2.5970 19 6 -4.4198 -4.7815 -1.4899 20 7 -4.2666 -3.5809 -0.9728 21 14 -6.0484 -5.6776 -1.3044 22 1 -6.0288 -6.4875 -0.0599 23 1 -7.1528 -4.6874 -1.2335 24 1 -6.2581 -6.5701 -2.4726 25 1 -0.3633 -0.0003 1.0277 26 1 -0.3633 0.8903 -0.5135 27 1 -0.3634 -0.8897 -0.5141 28 1 1.6676 2.1276 0.0004 29 1 5.3047 0.1283 -0.0014 30 1 4.1736 -2.0589 0.0095 31 1 0.5707 -2.4291 0.5899 32 1 2.1244 -3.2832 0.4337 33 1 0.2270 -4.6306 -0.9257 34 1 2.1920 -4.4610 -3.6836 35 1 1.5711 -6.0265 -3.1078 36 1 1.0809 -5.4074 -4.7028 37 1 -1.3758 -5.5653 -4.0558 38 1 -0.8026 -6.2924 -2.5356 39 1 -2.0646 -3.8401 -1.9284 40 1 -4.9996 -3.1612 -0.4957 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699403524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:18 Heat of formation + Delta-G solvation = -25.914091 kcal Electronic energy + Delta-G solvation = -21330.731248 eV Core-core repulsion = 18144.281939 eV Total energy + Delta-G solvation = -3186.449310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.56227 -40.44770 -37.73014 -35.49007 -35.24858 -33.42991 -33.00451 -31.66067 -29.50425 -27.97792 -27.40630 -24.62102 -23.95754 -23.04827 -21.94900 -21.29307 -19.22807 -18.12739 -17.77990 -17.64162 -16.88976 -16.59679 -16.05168 -15.87585 -15.48622 -15.25660 -15.14520 -14.69450 -14.27338 -14.01220 -13.78998 -13.66253 -13.63259 -13.58814 -13.32084 -13.06741 -12.90946 -12.77200 -12.62425 -12.25144 -12.14293 -11.89244 -11.69763 -11.07986 -10.93429 -10.41386 -10.37040 -10.02031 -9.79758 -9.00027 -7.93638 -5.22784 0.22378 0.26934 1.49572 1.50530 1.58687 1.67633 2.27923 2.56969 2.89724 3.40946 3.51228 3.63159 3.77394 3.81232 3.99759 4.02672 4.07567 4.11075 4.30881 4.44165 4.50897 4.53241 4.55409 4.72849 4.76065 4.80966 4.87435 4.90732 4.95089 5.05542 5.13603 5.20582 5.31087 5.42669 5.51949 5.61108 5.81865 6.27451 6.61529 7.04106 7.29881 7.35229 8.08208 8.32518 9.29214 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020651 B = 0.004270 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.559649 B = 6555.911991 C = 7598.283567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.131 4.131 3 C 0.083 3.917 4 N -0.508 5.508 5 C 0.079 3.921 6 C -0.159 4.159 7 C -0.035 4.035 8 C -0.102 4.102 9 C 0.518 3.482 10 O -0.580 6.580 11 N -0.707 5.707 12 C 0.141 3.859 13 H 0.055 0.945 14 C -0.145 4.145 15 C 0.146 3.854 16 N -0.743 5.743 17 C -0.246 4.246 18 H 0.077 0.923 19 C -0.069 4.069 20 N -0.965 5.965 21 Si 0.970 3.030 22 H -0.285 1.285 23 H -0.299 1.299 24 H -0.272 1.272 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.168 0.832 29 H 0.181 0.819 30 H 0.159 0.841 31 H 0.115 0.885 32 H 0.139 0.861 33 H 0.411 0.589 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.042 0.958 39 H 0.375 0.625 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.716 0.823 3.780 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.133 4.133 3 C -0.074 4.074 4 N -0.217 5.217 5 C -0.078 4.078 6 C -0.178 4.178 7 C -0.043 4.043 8 C -0.141 4.141 9 C 0.305 3.695 10 O -0.460 6.460 11 N -0.358 5.358 12 C 0.036 3.964 13 H 0.073 0.927 14 C -0.204 4.204 15 C 0.019 3.981 16 N -0.386 5.386 17 C -0.378 4.378 18 H 0.095 0.905 19 C -0.262 4.262 20 N -0.616 5.616 21 Si 0.800 3.200 22 H -0.212 1.212 23 H -0.226 1.226 24 H -0.197 1.197 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.185 0.815 29 H 0.198 0.802 30 H 0.177 0.823 31 H 0.133 0.867 32 H 0.157 0.843 33 H 0.247 0.753 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.207 0.793 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 16.255 1.972 3.074 16.660 hybrid contribution -1.776 -0.903 0.395 2.032 sum 14.478 1.070 3.469 14.927 Atomic orbital electron populations 1.20727 0.89925 1.02926 1.03151 1.20958 0.97894 0.94127 1.00301 1.22875 0.90032 0.97989 0.96486 1.67645 1.08671 1.32546 1.12833 1.23153 1.01487 0.87406 0.95717 1.22289 0.93995 1.00784 1.00733 1.19834 0.94283 0.94081 0.96104 1.20746 1.03534 0.95919 0.93900 1.20775 0.76968 0.80341 0.91435 1.90689 1.55414 1.52206 1.47713 1.45952 1.57511 1.22754 1.09589 1.21047 0.94834 0.97509 0.83015 0.92691 1.21992 0.96396 1.00500 1.01522 1.21124 0.86351 0.94746 0.95906 1.42517 1.10463 1.19733 1.65924 1.19617 0.90550 0.99678 1.27934 0.90463 1.25493 1.01609 0.97601 1.01517 1.69811 1.32835 1.16125 1.42788 0.85194 0.79592 0.77237 0.78018 1.21191 1.22629 1.19682 0.89263 0.90648 0.93246 0.81514 0.80218 0.82330 0.86655 0.84281 0.75300 0.93028 0.90637 0.90497 0.94783 0.94001 0.79279 0.94081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.90 9.30 71.24 0.66 -2.24 16 2 C -0.13 -3.52 5.90 -19.78 -0.12 -3.64 16 3 C 0.08 2.16 10.86 84.69 0.92 3.08 16 4 N -0.51 -13.67 10.36 -195.84 -2.03 -15.70 16 5 C 0.08 1.76 11.18 84.67 0.95 2.71 16 6 C -0.16 -3.43 9.80 22.36 0.22 -3.21 16 7 C -0.03 -0.87 4.41 -19.67 -0.09 -0.96 16 8 C -0.10 -2.30 5.19 29.10 0.15 -2.15 16 9 C 0.52 15.65 7.11 87.66 0.62 16.28 16 10 O -0.58 -22.18 15.70 -3.04 -0.05 -22.23 16 11 N -0.71 -20.70 4.52 -442.53 -2.00 -22.70 16 12 C 0.14 4.50 2.73 44.99 0.12 4.62 16 13 H 0.05 2.11 7.58 -2.39 -0.02 2.09 16 14 C -0.15 -3.60 9.48 71.98 0.68 -2.91 16 15 C 0.15 5.31 5.82 86.38 0.50 5.81 16 16 N -0.74 -35.50 5.43 -343.45 -1.87 -37.37 16 17 C -0.25 -13.07 9.99 84.03 0.84 -12.23 16 18 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 19 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 20 N -0.97 -56.85 13.06 21.65 0.28 -56.56 16 21 Si 0.97 44.55 29.55 68.60 2.03 46.57 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 25 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 26 H 0.07 1.87 8.09 -2.38 -0.02 1.85 16 27 H 0.05 1.55 6.35 -2.39 -0.02 1.53 16 28 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 29 H 0.18 2.79 8.06 -2.91 -0.02 2.76 16 30 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.12 2.55 7.11 -2.39 -0.02 2.53 16 32 H 0.14 2.10 8.07 -2.39 -0.02 2.08 16 33 H 0.41 10.93 8.60 -92.71 -0.80 10.13 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.37 19.37 7.33 -92.71 -0.68 18.69 16 40 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -70.25 339.52 1.88 -68.37 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -0.43 Total: 37.83 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 5.93 Total: 1.79 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -5.61 Total: -132.33 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.05 Total: -22.23 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -70.25 1.88 -68.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699403524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.456 kcal (2) G-P(sol) polarization free energy of solvation -70.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds