Wall clock time and date at job start Mon Mar 30 2020 01:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38624 * 120.32304 * 2 1 4 4 C 1.38591 * 118.48363 * 179.72375 * 3 2 1 5 5 C 1.39312 * 119.05987 * 0.49463 * 4 3 2 6 6 C 1.48176 * 119.71989 * 179.77289 * 5 4 3 7 7 O 1.21514 * 120.00022 * 359.72361 * 6 5 4 8 8 N 1.34769 * 119.99392 * 179.72631 * 6 5 4 9 9 C 1.46505 * 119.99686 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47068 * 324.99893 * 9 8 6 11 11 C 1.53002 * 109.47411 * 84.99974 * 9 8 6 12 12 C 1.52997 * 109.47212 * 204.99833 * 9 8 6 13 13 N 1.46500 * 109.47170 * 54.99826 * 12 9 8 14 14 C 1.36937 * 120.00196 * 179.97438 * 13 12 9 15 15 H 1.08003 * 119.99920 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.31612 * 120.00394 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47697 * 90.00035 * 18 16 14 20 20 H 1.48502 * 109.47013 * 210.00358 * 18 16 14 21 21 H 1.48509 * 109.47125 * 329.99744 * 18 16 14 22 22 N 1.32711 * 120.55096 * 359.49170 * 5 4 3 23 23 C 1.31515 * 121.64406 * 0.25991 * 22 5 4 24 24 C 1.50704 * 119.54575 * 179.97438 * 23 22 5 25 25 H 1.08998 * 109.47284 * 270.02533 * 1 2 3 26 26 H 1.09005 * 109.46569 * 30.02384 * 1 2 3 27 27 H 1.08998 * 109.47311 * 150.01888 * 1 2 3 28 28 H 1.08001 * 120.75911 * 359.97438 * 3 2 1 29 29 H 1.08004 * 120.46931 * 180.26805 * 4 3 2 30 30 H 0.97000 * 120.00680 * 359.97438 * 8 6 5 31 31 H 1.08996 * 109.47407 * 180.02562 * 11 9 8 32 32 H 1.09000 * 109.46986 * 300.00092 * 11 9 8 33 33 H 1.09002 * 109.47075 * 59.99363 * 11 9 8 34 34 H 1.08998 * 109.47192 * 174.99746 * 12 9 8 35 35 H 1.09000 * 109.47325 * 294.99862 * 12 9 8 36 36 H 0.97004 * 120.00188 * 0.02562 * 13 12 9 37 37 H 0.97000 * 120.00161 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.47697 * 90.00034 * 24 23 22 39 39 H 1.09008 * 109.47044 * 209.99845 * 24 23 22 40 40 H 1.09001 * 109.47465 * 329.99511 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1521 0.0059 5 6 4.2294 -0.0867 0.0010 6 6 5.7097 -0.1513 0.0021 7 8 6.3626 0.8736 0.0021 8 7 6.3319 -1.3467 0.0030 9 6 7.7956 -1.4107 0.0046 10 1 8.1959 -0.5856 -0.5846 11 6 8.3091 -1.3071 1.4422 12 6 8.2487 -2.7391 -0.6042 13 7 7.6588 -2.8922 -1.9364 14 6 7.9249 -4.0119 -2.6785 15 1 8.5693 -4.7823 -2.2815 16 6 7.3654 -4.1571 -3.9406 17 7 6.5797 -3.2186 -4.4242 18 14 7.7278 -5.6849 -4.9527 19 1 6.7136 -6.7279 -4.6553 20 1 7.6791 -5.3446 -6.3974 21 1 9.0792 -6.1966 -4.6100 22 7 3.5217 -1.2094 0.0011 23 6 2.2066 -1.1960 0.0006 24 6 1.4501 -2.4994 0.0000 25 1 -0.3634 0.0005 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6847 2.1419 -0.0004 29 1 4.1693 2.0649 0.0104 30 1 5.8108 -2.1649 0.0033 31 1 9.3980 -1.3542 1.4433 32 1 7.9862 -0.3606 1.8760 33 1 7.9086 -2.1321 2.0314 34 1 9.3357 -2.7499 -0.6848 35 1 7.9235 -3.5609 0.0338 36 1 7.0803 -2.2001 -2.2932 37 1 6.1891 -3.3199 -5.3063 38 1 1.2673 -2.8139 1.0275 39 1 0.4981 -2.3668 -0.5141 40 1 2.0376 -3.2603 -0.5137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699413031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:34 Heat of formation + Delta-G solvation = -0.218530 kcal Electronic energy + Delta-G solvation = -21282.305601 eV Core-core repulsion = 18096.970534 eV Total energy + Delta-G solvation = -3185.335067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.65428 -39.01085 -36.12785 -34.04139 -33.57973 -33.01270 -31.21814 -29.90486 -28.41867 -27.33765 -25.63016 -23.43743 -22.66210 -22.18736 -20.70732 -20.03732 -17.93342 -17.04199 -16.57686 -15.63469 -15.28471 -15.15671 -14.76121 -14.45618 -14.23891 -13.61682 -13.51263 -13.29935 -13.24796 -13.05068 -12.81001 -12.39949 -12.27357 -12.17443 -12.10994 -11.98195 -11.56394 -11.54188 -10.86473 -10.80696 -10.42233 -10.03453 -9.99469 -9.79329 -9.70018 -9.36312 -8.88403 -8.85437 -8.57252 -6.91082 -5.73062 -3.02890 0.70015 1.21298 2.94148 3.43581 3.45867 3.50088 3.52106 3.95706 4.15893 4.56106 4.60832 4.71554 4.75012 4.93846 5.19840 5.28563 5.33158 5.44254 5.53297 5.53721 5.54439 5.58980 5.60375 5.70930 5.74831 5.99795 6.03120 6.07670 6.14220 6.16717 6.23966 6.44813 6.53385 6.60877 6.74779 6.99550 7.71803 7.74054 8.05036 8.44244 8.55976 9.56005 10.12806 10.48141 11.49258 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014434 B = 0.005070 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.351489 B = 5521.065441 C = 6814.592658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.123 4.123 3 C -0.084 4.084 4 C -0.117 4.117 5 C 0.086 3.914 6 C 0.571 3.429 7 O -0.545 6.545 8 N -0.688 5.688 9 C 0.130 3.870 10 H 0.088 0.912 11 C -0.157 4.157 12 C 0.145 3.855 13 N -0.731 5.731 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.930 5.930 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 N -0.447 5.447 23 C 0.127 3.873 24 C -0.108 4.108 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.139 0.861 29 H 0.147 0.853 30 H 0.415 0.585 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.034 0.966 35 H 0.025 0.975 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.822 6.601 12.634 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.125 4.125 3 C -0.109 4.109 4 C -0.138 4.138 5 C -0.052 4.052 6 C 0.355 3.645 7 O -0.423 6.423 8 N -0.338 5.338 9 C 0.026 3.974 10 H 0.106 0.894 11 C -0.216 4.216 12 C 0.017 3.983 13 N -0.376 5.376 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 N -0.159 5.159 23 C -0.013 4.013 24 C -0.165 4.165 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.157 0.843 29 H 0.164 0.836 30 H 0.251 0.749 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.220 0.780 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.766 6.353 12.568 17.727 hybrid contribution -0.661 -0.147 -0.849 1.086 sum -11.427 6.206 11.719 17.505 Atomic orbital electron populations 1.20845 0.90087 1.03463 1.02667 1.20915 0.97629 0.93648 1.00283 1.21447 0.93623 0.98233 0.97635 1.22076 0.94824 0.99041 0.97878 1.21190 0.94414 0.89487 1.00142 1.17834 0.85670 0.84181 0.76782 1.90739 1.65875 1.34303 1.51357 1.45854 1.07655 1.08552 1.71719 1.21327 0.79210 1.00453 0.96447 0.89393 1.22099 1.01286 1.01875 0.96301 1.20979 0.96714 0.92489 0.88145 1.42361 1.58099 1.23527 1.13644 1.19219 1.24150 0.96962 0.96967 0.91128 1.24748 1.00086 0.98270 0.97701 1.69679 1.36108 1.33766 1.18302 0.86192 0.77756 0.82592 0.79638 1.21741 1.21831 1.20757 1.67418 1.08008 1.30410 1.10073 1.21152 0.89206 0.95242 0.95721 1.20815 0.99364 0.93269 1.03088 0.90696 0.91243 0.90511 0.84326 0.83560 0.74863 0.91529 0.92448 0.92506 0.94783 0.95732 0.77964 0.93560 0.90363 0.90356 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.62 36.01 0.35 -0.48 16 2 C -0.12 -1.36 5.91 -104.36 -0.62 -1.98 16 3 C -0.08 -0.94 9.85 -39.31 -0.39 -1.33 16 4 C -0.12 -1.65 9.63 -39.05 -0.38 -2.03 16 5 C 0.09 1.45 6.75 -83.01 -0.56 0.89 16 6 C 0.57 10.73 7.78 -12.18 -0.09 10.64 16 7 O -0.54 -11.19 15.99 5.35 0.09 -11.10 16 8 N -0.69 -12.68 4.51 -54.64 -0.25 -12.92 16 9 C 0.13 2.35 2.73 -67.93 -0.19 2.17 16 10 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 11 C -0.16 -2.29 9.48 37.16 0.35 -1.93 16 12 C 0.14 2.96 5.82 -4.04 -0.02 2.93 16 13 N -0.73 -18.95 5.43 -59.91 -0.33 -19.27 16 14 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 15 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -28.78 13.06 55.49 0.72 -28.05 16 18 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 22 N -0.45 -7.31 9.45 -6.06 -0.06 -7.37 16 23 C 0.13 1.70 6.78 -82.61 -0.56 1.14 16 24 C -0.11 -1.12 9.77 36.01 0.35 -0.77 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.08 0.50 5.95 -51.93 -0.31 0.19 16 28 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.15 1.94 7.64 -52.48 -0.40 1.53 16 30 H 0.41 7.76 7.93 -40.82 -0.32 7.43 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.39 10.78 7.33 -40.82 -0.30 10.48 16 37 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.63 5.93 -51.92 -0.31 0.32 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 338.71 15.07 5.10 5.10 Total: -1.00 -33.60 338.71 -7.54 -41.15 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -5.81 Total: 13.03 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -2.00 Total: 1.81 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: 0.10 Total: -67.62 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.60 -7.54 -41.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699413031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.928 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds