Wall clock time and date at job start Mon Mar 30 2020 01:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38624 * 120.32304 * 2 1 4 4 C 1.38591 * 118.48363 * 179.72375 * 3 2 1 5 5 C 1.39312 * 119.05987 * 0.49463 * 4 3 2 6 6 C 1.48176 * 119.71989 * 179.77289 * 5 4 3 7 7 O 1.21514 * 120.00022 * 359.72361 * 6 5 4 8 8 N 1.34769 * 119.99392 * 179.72631 * 6 5 4 9 9 C 1.46505 * 119.99686 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47068 * 324.99893 * 9 8 6 11 11 C 1.53002 * 109.47411 * 84.99974 * 9 8 6 12 12 C 1.52997 * 109.47212 * 204.99833 * 9 8 6 13 13 N 1.46500 * 109.47170 * 54.99826 * 12 9 8 14 14 C 1.36937 * 120.00196 * 179.97438 * 13 12 9 15 15 H 1.08003 * 119.99920 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.31612 * 120.00394 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47697 * 90.00035 * 18 16 14 20 20 H 1.48502 * 109.47013 * 210.00358 * 18 16 14 21 21 H 1.48509 * 109.47125 * 329.99744 * 18 16 14 22 22 N 1.32711 * 120.55096 * 359.49170 * 5 4 3 23 23 C 1.31515 * 121.64406 * 0.25991 * 22 5 4 24 24 C 1.50704 * 119.54575 * 179.97438 * 23 22 5 25 25 H 1.08998 * 109.47284 * 270.02533 * 1 2 3 26 26 H 1.09005 * 109.46569 * 30.02384 * 1 2 3 27 27 H 1.08998 * 109.47311 * 150.01888 * 1 2 3 28 28 H 1.08001 * 120.75911 * 359.97438 * 3 2 1 29 29 H 1.08004 * 120.46931 * 180.26805 * 4 3 2 30 30 H 0.97000 * 120.00680 * 359.97438 * 8 6 5 31 31 H 1.08996 * 109.47407 * 180.02562 * 11 9 8 32 32 H 1.09000 * 109.46986 * 300.00092 * 11 9 8 33 33 H 1.09002 * 109.47075 * 59.99363 * 11 9 8 34 34 H 1.08998 * 109.47192 * 174.99746 * 12 9 8 35 35 H 1.09000 * 109.47325 * 294.99862 * 12 9 8 36 36 H 0.97004 * 120.00188 * 0.02562 * 13 12 9 37 37 H 0.97000 * 120.00161 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.47697 * 90.00034 * 24 23 22 39 39 H 1.09008 * 109.47044 * 209.99845 * 24 23 22 40 40 H 1.09001 * 109.47465 * 329.99511 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1521 0.0059 5 6 4.2294 -0.0867 0.0010 6 6 5.7097 -0.1513 0.0021 7 8 6.3626 0.8736 0.0021 8 7 6.3319 -1.3467 0.0030 9 6 7.7956 -1.4107 0.0046 10 1 8.1959 -0.5856 -0.5846 11 6 8.3091 -1.3071 1.4422 12 6 8.2487 -2.7391 -0.6042 13 7 7.6588 -2.8922 -1.9364 14 6 7.9249 -4.0119 -2.6785 15 1 8.5693 -4.7823 -2.2815 16 6 7.3654 -4.1571 -3.9406 17 7 6.5797 -3.2186 -4.4242 18 14 7.7278 -5.6849 -4.9527 19 1 6.7136 -6.7279 -4.6553 20 1 7.6791 -5.3446 -6.3974 21 1 9.0792 -6.1966 -4.6100 22 7 3.5217 -1.2094 0.0011 23 6 2.2066 -1.1960 0.0006 24 6 1.4501 -2.4994 0.0000 25 1 -0.3634 0.0005 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6847 2.1419 -0.0004 29 1 4.1693 2.0649 0.0104 30 1 5.8108 -2.1649 0.0033 31 1 9.3980 -1.3542 1.4433 32 1 7.9862 -0.3606 1.8760 33 1 7.9086 -2.1321 2.0314 34 1 9.3357 -2.7499 -0.6848 35 1 7.9235 -3.5609 0.0338 36 1 7.0803 -2.2001 -2.2932 37 1 6.1891 -3.3199 -5.3063 38 1 1.2673 -2.8139 1.0275 39 1 0.4981 -2.3668 -0.5141 40 1 2.0376 -3.2603 -0.5137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699413031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:34 Heat of formation + Delta-G solvation = -23.822477 kcal Electronic energy + Delta-G solvation = -21283.329145 eV Core-core repulsion = 18096.970534 eV Total energy + Delta-G solvation = -3186.358611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.77527 -40.35228 -37.75311 -35.52199 -34.96468 -34.01494 -33.00149 -31.55512 -29.25776 -28.31832 -27.44562 -24.76602 -24.20936 -23.35536 -22.01454 -21.46151 -19.43993 -18.90197 -17.77830 -16.99109 -16.75979 -16.40090 -16.15940 -15.71064 -15.50585 -15.26113 -15.16562 -14.70512 -14.21374 -13.94133 -13.70305 -13.68475 -13.63135 -13.55413 -13.16766 -13.08009 -12.95951 -12.78334 -12.67518 -12.32276 -12.16255 -11.92731 -11.73299 -11.36500 -10.97887 -10.76746 -10.49593 -10.16540 -9.74944 -9.03637 -7.95035 -5.25757 -0.38125 0.23297 1.46676 1.49097 1.57531 1.66770 2.10472 2.55343 2.80602 3.06243 3.39030 3.66837 3.76147 3.83758 3.89034 3.97408 4.01707 4.25401 4.27664 4.47301 4.57351 4.67639 4.73277 4.75800 4.76990 4.82506 4.89480 4.90529 5.02510 5.10531 5.14167 5.23524 5.26561 5.28029 5.48043 5.51875 5.71517 6.24589 6.41335 6.82942 7.12810 7.31358 8.04590 8.28699 9.28379 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014434 B = 0.005070 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.351489 B = 5521.065441 C = 6814.592658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.109 4.109 3 C -0.080 4.080 4 C -0.123 4.123 5 C 0.048 3.952 6 C 0.565 3.435 7 O -0.573 6.573 8 N -0.689 5.689 9 C 0.135 3.865 10 H 0.064 0.936 11 C -0.145 4.145 12 C 0.146 3.854 13 N -0.745 5.745 14 C -0.246 4.246 15 H 0.081 0.919 16 C -0.075 4.075 17 N -0.971 5.971 18 Si 0.977 3.023 19 H -0.285 1.285 20 H -0.298 1.298 21 H -0.267 1.267 22 N -0.477 5.477 23 C 0.105 3.895 24 C -0.105 4.105 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.179 0.821 29 H 0.147 0.853 30 H 0.412 0.588 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.372 0.628 37 H 0.250 0.750 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.431 6.161 13.605 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.111 4.111 3 C -0.105 4.105 4 C -0.144 4.144 5 C -0.089 4.089 6 C 0.351 3.649 7 O -0.454 6.454 8 N -0.338 5.338 9 C 0.030 3.970 10 H 0.082 0.918 11 C -0.203 4.203 12 C 0.019 3.981 13 N -0.388 5.388 14 C -0.378 4.378 15 H 0.099 0.901 16 C -0.268 4.268 17 N -0.622 5.622 18 Si 0.806 3.194 19 H -0.212 1.212 20 H -0.225 1.225 21 H -0.192 1.192 22 N -0.190 5.190 23 C -0.036 4.036 24 C -0.162 4.162 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.196 0.804 29 H 0.165 0.835 30 H 0.248 0.752 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.203 0.797 37 H 0.058 0.942 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.340 5.893 13.588 19.278 hybrid contribution -0.236 0.012 -1.090 1.115 sum -12.576 5.905 12.499 18.688 Atomic orbital electron populations 1.20981 0.86684 1.04893 1.04326 1.21410 0.99901 0.92570 0.97225 1.21900 0.92343 1.00129 0.96119 1.22229 0.96429 0.97977 0.97801 1.20995 0.93273 0.90933 1.03711 1.18275 0.86957 0.83701 0.75953 1.90693 1.66863 1.34937 1.52863 1.45873 1.07714 1.08507 1.71718 1.21262 0.79295 0.98185 0.98239 0.91762 1.22001 1.02500 1.02202 0.93600 1.21138 0.96879 0.94086 0.85968 1.42562 1.58199 1.22605 1.15460 1.19678 1.23316 0.97553 0.97238 0.90083 1.25620 1.00511 1.01475 0.99145 1.69863 1.37813 1.36033 1.18452 0.85086 0.78172 0.78848 0.77295 1.21195 1.22469 1.19187 1.67325 1.09765 1.30652 1.11231 1.21780 0.88553 0.97487 0.95767 1.20903 0.99731 0.91280 1.04309 0.88632 0.89437 0.89502 0.80387 0.83546 0.75195 0.89457 0.92855 0.91112 0.93750 0.94413 0.79654 0.94167 0.88583 0.87562 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.62 71.24 0.69 -0.47 16 2 C -0.11 -2.16 5.91 -19.70 -0.12 -2.28 16 3 C -0.08 -1.62 9.85 22.45 0.22 -1.40 16 4 C -0.12 -3.49 9.63 22.61 0.22 -3.27 16 5 C 0.05 1.68 6.75 41.91 0.28 1.96 16 6 C 0.57 22.42 7.78 86.89 0.68 23.10 16 7 O -0.57 -24.81 15.99 -3.76 -0.06 -24.87 16 8 N -0.69 -26.55 4.51 -445.09 -2.01 -28.56 16 9 C 0.13 4.98 2.73 44.99 0.12 5.10 16 10 H 0.06 2.68 7.58 -2.39 -0.02 2.66 16 11 C -0.14 -4.11 9.48 71.98 0.68 -3.43 16 12 C 0.15 5.97 5.82 86.38 0.50 6.47 16 13 N -0.75 -39.38 5.43 -343.45 -1.87 -41.25 16 14 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 15 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 16 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 17 N -0.97 -61.60 13.06 21.65 0.28 -61.32 16 18 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 22 N -0.48 -16.08 9.45 -173.08 -1.64 -17.72 16 23 C 0.11 2.73 6.78 42.68 0.29 3.02 16 24 C -0.11 -2.05 9.77 71.24 0.70 -1.35 16 25 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.09 0.66 8.09 -2.38 -0.02 0.64 16 27 H 0.09 0.76 5.95 -2.39 -0.01 0.75 16 28 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 29 H 0.15 3.99 7.64 -2.91 -0.02 3.97 16 30 H 0.41 16.18 7.93 -92.71 -0.74 15.45 16 31 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.37 21.59 7.33 -92.71 -0.68 20.91 16 37 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 39 H 0.11 1.41 5.93 -2.38 -0.01 1.40 16 40 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -75.16 338.71 1.95 -73.21 By element: Atomic # 1 Polarization: 41.65 SS G_CDS: -0.35 Total: 41.29 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 5.57 Total: 10.30 kcal Atomic # 7 Polarization: -143.62 SS G_CDS: -5.23 Total: -148.84 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.06 Total: -24.87 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -75.16 1.95 -73.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699413031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.384 kcal (2) G-P(sol) polarization free energy of solvation -75.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds