Wall clock time and date at job start Mon Mar 30 2020 02:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38174 * 120.49874 * 2 1 4 4 N 1.31788 * 120.89815 * 179.97438 * 3 2 1 5 5 C 1.31834 * 122.04509 * 0.02562 * 4 3 2 6 6 C 1.38121 * 120.89833 * 359.97438 * 5 4 3 7 7 C 1.39793 * 120.49880 * 179.97438 * 2 1 3 8 8 C 1.48145 * 120.92534 * 0.04425 * 7 2 1 9 9 O 1.21510 * 120.00039 * 6.32813 * 8 7 2 10 10 N 1.34780 * 119.99919 * 186.32390 * 8 7 2 11 11 C 1.46495 * 119.99664 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47427 * 34.99941 * 11 10 8 13 13 C 1.53000 * 109.47435 * 274.99938 * 11 10 8 14 14 C 1.53002 * 109.47180 * 154.99991 * 11 10 8 15 15 N 1.46500 * 109.47218 * 305.00080 * 14 11 10 16 16 C 1.46498 * 120.00062 * 270.00098 * 15 14 11 17 17 C 1.36941 * 120.00241 * 89.99524 * 15 14 11 18 18 H 1.07997 * 119.99390 * 24.50666 * 17 15 14 19 19 C 1.38803 * 120.00054 * 204.50578 * 17 15 14 20 20 N 1.31625 * 120.00360 * 13.25819 * 19 17 15 21 21 Si 1.86799 * 120.00030 * 193.25802 * 19 17 15 22 22 H 1.48506 * 109.47219 * 90.00082 * 21 19 17 23 23 H 1.48503 * 109.47298 * 209.99930 * 21 19 17 24 24 H 1.48503 * 109.47357 * 330.00308 * 21 19 17 25 25 H 1.09004 * 109.47044 * 96.12163 * 1 2 3 26 26 H 1.08995 * 109.47165 * 216.11991 * 1 2 3 27 27 H 1.09001 * 109.47289 * 336.12052 * 1 2 3 28 28 H 1.08009 * 119.54882 * 359.97438 * 3 2 1 29 29 H 1.08004 * 119.54613 * 179.72078 * 5 4 3 30 30 H 1.08001 * 120.50005 * 179.97438 * 6 5 4 31 31 H 0.97000 * 119.99815 * 0.02562 * 10 8 7 32 32 H 1.09002 * 109.46808 * 59.99874 * 13 11 10 33 33 H 1.08997 * 109.47520 * 180.02562 * 13 11 10 34 34 H 1.09000 * 109.46816 * 300.00378 * 13 11 10 35 35 H 1.09005 * 109.46986 * 64.99629 * 14 11 10 36 36 H 1.09002 * 109.47338 * 184.99521 * 14 11 10 37 37 H 1.09000 * 109.47736 * 93.93209 * 16 15 14 38 38 H 1.08998 * 109.47115 * 213.94141 * 16 15 14 39 39 H 1.09000 * 109.46953 * 333.93553 * 16 15 14 40 40 H 0.96993 * 120.00060 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1906 0.0000 4 7 3.5261 1.1997 0.0005 5 6 4.2334 0.0872 0.0005 6 6 3.6137 -1.1472 0.0006 7 6 2.2165 -1.2045 0.0005 8 6 1.5079 -2.5055 0.0001 9 8 0.2989 -2.5388 -0.1167 10 7 2.2043 -3.6522 0.1292 11 6 1.5036 -4.9387 0.1283 12 1 0.6527 -4.8886 -0.5512 13 6 1.0094 -5.2514 1.5421 14 6 2.4602 -6.0402 -0.3328 15 7 3.0255 -5.6820 -1.6360 16 6 2.3473 -6.0947 -2.8672 17 6 4.1879 -4.9612 -1.7034 18 1 4.8885 -4.9884 -0.8819 19 6 4.4657 -4.1956 -2.8274 20 7 3.5177 -3.9492 -3.7066 21 14 6.1851 -3.5152 -3.0924 22 1 6.9911 -4.4939 -3.8655 23 1 6.1014 -2.2381 -3.8458 24 1 6.8297 -3.2725 -1.7768 25 1 -0.3633 -0.1096 -1.0218 26 1 -0.3633 -0.8301 0.6058 27 1 -0.3634 0.9397 0.4160 28 1 1.6690 2.1264 -0.0004 29 1 5.3120 0.1418 -0.0036 30 1 4.1994 -2.0546 0.0002 31 1 3.1694 -3.6256 0.2228 32 1 0.3279 -4.4667 1.8706 33 1 0.4884 -6.2088 1.5415 34 1 1.8602 -5.3016 2.2215 35 1 3.2647 -6.1505 0.3943 36 1 1.9166 -6.9811 -0.4188 37 1 1.6893 -5.2943 -3.2055 38 1 3.0891 -6.3054 -3.6375 39 1 1.7588 -6.9918 -2.6745 40 1 3.7118 -3.4139 -4.4919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699447093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:35 Heat of formation + Delta-G solvation = 18.986739 kcal Electronic energy + Delta-G solvation = -22475.505637 eV Core-core repulsion = 19291.003373 eV Total energy + Delta-G solvation = -3184.502264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.36912 -38.67107 -36.38734 -34.14270 -33.06089 -32.36449 -31.06420 -29.85482 -27.10030 -26.22756 -25.66107 -24.41136 -22.33453 -21.67558 -20.53987 -19.77313 -17.70850 -16.70036 -16.42266 -15.26768 -15.09981 -15.02441 -14.78407 -14.59765 -13.89675 -13.58173 -13.32984 -13.18072 -13.00589 -12.89504 -12.46684 -12.34208 -12.13724 -11.78471 -11.45401 -11.36656 -11.29790 -10.91545 -10.74862 -10.46443 -10.32827 -10.10239 -9.90565 -9.76975 -9.50507 -8.94724 -8.72747 -8.64357 -8.31202 -6.82321 -5.81458 -3.29810 1.05531 1.30056 3.27222 3.34730 3.38557 3.39158 3.74139 4.14315 4.39147 4.59216 4.95332 5.05433 5.08988 5.21917 5.27893 5.44486 5.58683 5.65334 5.80110 5.87188 5.89691 5.93990 5.99938 6.09767 6.12975 6.19963 6.29213 6.39451 6.46696 6.62347 6.69644 6.82487 6.85950 7.21094 7.28820 7.64656 7.71234 8.08391 8.19809 8.30245 8.81927 9.12600 9.76907 10.28333 11.22057 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013446 B = 0.008531 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.913615 B = 3281.188813 C = 4654.838969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.083 4.083 3 C 0.083 3.917 4 N -0.473 5.473 5 C 0.080 3.920 6 C -0.124 4.124 7 C -0.081 4.081 8 C 0.559 3.441 9 O -0.547 6.547 10 N -0.676 5.676 11 C 0.118 3.882 12 H 0.078 0.922 13 C -0.160 4.160 14 C 0.141 3.859 15 N -0.596 5.596 16 C 0.162 3.838 17 C -0.264 4.264 18 H 0.065 0.935 19 C 0.012 3.988 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.277 1.277 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.156 0.844 29 H 0.157 0.843 30 H 0.144 0.856 31 H 0.404 0.596 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.029 0.971 38 H 0.040 0.960 39 H -0.002 1.002 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 3.327 9.134 10.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.075 4.075 4 N -0.182 5.182 5 C -0.076 4.076 6 C -0.144 4.144 7 C -0.092 4.092 8 C 0.346 3.654 9 O -0.427 6.427 10 N -0.325 5.325 11 C 0.011 3.989 12 H 0.096 0.904 13 C -0.219 4.219 14 C 0.013 3.987 15 N -0.318 5.318 16 C 0.017 3.983 17 C -0.394 4.394 18 H 0.083 0.917 19 C -0.188 4.188 20 N -0.535 5.535 21 Si 0.721 3.279 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.202 1.202 25 H 0.094 0.906 26 H 0.113 0.887 27 H 0.075 0.925 28 H 0.173 0.827 29 H 0.175 0.825 30 H 0.161 0.839 31 H 0.240 0.760 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.017 0.983 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.867 4.122 8.856 10.180 hybrid contribution 1.104 -0.315 -0.489 1.248 sum -1.762 3.807 8.367 9.360 Atomic orbital electron populations 1.20930 0.89376 1.02769 1.03808 1.21077 0.98243 0.92585 0.96689 1.22602 0.89842 0.97136 0.97891 1.67481 1.08294 1.31884 1.10493 1.22642 1.00357 0.87398 0.97195 1.22468 0.94266 1.00344 0.97328 1.20363 0.93754 0.94304 1.00770 1.17987 0.86808 0.83723 0.76930 1.90644 1.13766 1.87208 1.51089 1.45636 1.11123 1.04897 1.70891 1.21870 0.97116 0.84492 0.95459 0.90358 1.22161 1.00837 1.01280 0.97593 1.21209 0.94520 0.94027 0.88963 1.43852 1.25880 1.62714 0.99399 1.20785 0.95520 0.94024 0.87973 1.19038 0.94705 1.21778 1.03862 0.91709 1.25020 0.97085 0.97852 0.98865 1.70054 1.30393 1.40286 1.12813 0.86481 0.84761 0.78459 0.78221 1.21415 1.21645 1.20216 0.90567 0.88677 0.92475 0.82658 0.82532 0.83859 0.75954 0.92920 0.92139 0.92995 0.93320 0.92865 0.95248 0.94094 0.98349 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 8.84 36.01 0.32 -1.32 16 2 C -0.08 -1.35 5.93 -104.06 -0.62 -1.97 16 3 C 0.08 1.23 10.83 -17.59 -0.19 1.04 16 4 N -0.47 -7.58 10.34 -13.30 -0.14 -7.72 16 5 C 0.08 1.25 11.17 -17.59 -0.20 1.06 16 6 C -0.12 -2.08 9.60 -39.03 -0.37 -2.45 16 7 C -0.08 -1.46 5.91 -104.65 -0.62 -2.08 16 8 C 0.56 11.08 7.70 -12.19 -0.09 10.98 16 9 O -0.55 -11.73 13.20 5.36 0.07 -11.66 16 10 N -0.68 -12.77 4.44 -54.66 -0.24 -13.02 16 11 C 0.12 2.14 2.88 -67.93 -0.20 1.95 16 12 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 13 C -0.16 -2.33 9.48 37.16 0.35 -1.97 16 14 C 0.14 2.62 5.36 -4.04 -0.02 2.59 16 15 N -0.60 -13.72 2.81 -181.12 -0.51 -14.23 16 16 C 0.16 3.84 9.03 59.85 0.54 4.38 16 17 C -0.26 -6.47 7.98 -15.06 -0.12 -6.59 16 18 H 0.07 1.53 7.86 -52.49 -0.41 1.11 16 19 C 0.01 0.31 5.08 -17.43 -0.09 0.22 16 20 N -0.89 -24.82 10.83 55.49 0.60 -24.22 16 21 Si 0.89 20.42 29.57 -169.99 -5.03 15.39 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 25 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.09 1.55 5.95 -51.93 -0.31 1.24 16 27 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 28 H 0.16 1.80 8.06 -52.48 -0.42 1.37 16 29 H 0.16 2.02 8.06 -52.48 -0.42 1.60 16 30 H 0.14 2.33 6.59 -52.49 -0.35 1.99 16 31 H 0.40 7.47 5.58 -40.82 -0.23 7.25 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.85 8.04 -51.93 -0.42 0.43 16 36 H 0.05 0.90 7.87 -51.93 -0.41 0.49 16 37 H 0.03 0.78 7.38 -51.93 -0.38 0.39 16 38 H 0.04 1.04 7.37 -51.93 -0.38 0.66 16 39 H 0.00 -0.04 7.85 -51.93 -0.41 -0.45 16 40 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 329.42 15.07 4.96 4.96 Total: -1.00 -29.71 329.42 -7.36 -37.08 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.78 Total: 7.58 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -1.31 Total: 5.84 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.29 Total: -59.19 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.71 -7.36 -37.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699447093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.063 kcal (2) G-P(sol) polarization free energy of solvation -29.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds