Wall clock time and date at job start Mon Mar 30 2020 02:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38174 * 120.49874 * 2 1 4 4 N 1.31788 * 120.89815 * 179.97438 * 3 2 1 5 5 C 1.31834 * 122.04509 * 0.02562 * 4 3 2 6 6 C 1.38121 * 120.89833 * 359.97438 * 5 4 3 7 7 C 1.39793 * 120.49880 * 179.97438 * 2 1 3 8 8 C 1.48145 * 120.92534 * 0.04425 * 7 2 1 9 9 O 1.21510 * 120.00039 * 6.32813 * 8 7 2 10 10 N 1.34780 * 119.99919 * 186.32390 * 8 7 2 11 11 C 1.46495 * 119.99664 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47427 * 34.99941 * 11 10 8 13 13 C 1.53000 * 109.47435 * 274.99938 * 11 10 8 14 14 C 1.53002 * 109.47180 * 154.99991 * 11 10 8 15 15 N 1.46500 * 109.47218 * 305.00080 * 14 11 10 16 16 C 1.46498 * 120.00062 * 270.00098 * 15 14 11 17 17 C 1.36941 * 120.00241 * 89.99524 * 15 14 11 18 18 H 1.07997 * 119.99390 * 24.50666 * 17 15 14 19 19 C 1.38803 * 120.00054 * 204.50578 * 17 15 14 20 20 N 1.31625 * 120.00360 * 13.25819 * 19 17 15 21 21 Si 1.86799 * 120.00030 * 193.25802 * 19 17 15 22 22 H 1.48506 * 109.47219 * 90.00082 * 21 19 17 23 23 H 1.48503 * 109.47298 * 209.99930 * 21 19 17 24 24 H 1.48503 * 109.47357 * 330.00308 * 21 19 17 25 25 H 1.09004 * 109.47044 * 96.12163 * 1 2 3 26 26 H 1.08995 * 109.47165 * 216.11991 * 1 2 3 27 27 H 1.09001 * 109.47289 * 336.12052 * 1 2 3 28 28 H 1.08009 * 119.54882 * 359.97438 * 3 2 1 29 29 H 1.08004 * 119.54613 * 179.72078 * 5 4 3 30 30 H 1.08001 * 120.50005 * 179.97438 * 6 5 4 31 31 H 0.97000 * 119.99815 * 0.02562 * 10 8 7 32 32 H 1.09002 * 109.46808 * 59.99874 * 13 11 10 33 33 H 1.08997 * 109.47520 * 180.02562 * 13 11 10 34 34 H 1.09000 * 109.46816 * 300.00378 * 13 11 10 35 35 H 1.09005 * 109.46986 * 64.99629 * 14 11 10 36 36 H 1.09002 * 109.47338 * 184.99521 * 14 11 10 37 37 H 1.09000 * 109.47736 * 93.93209 * 16 15 14 38 38 H 1.08998 * 109.47115 * 213.94141 * 16 15 14 39 39 H 1.09000 * 109.46953 * 333.93553 * 16 15 14 40 40 H 0.96993 * 120.00060 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1906 0.0000 4 7 3.5261 1.1997 0.0005 5 6 4.2334 0.0872 0.0005 6 6 3.6137 -1.1472 0.0006 7 6 2.2165 -1.2045 0.0005 8 6 1.5079 -2.5055 0.0001 9 8 0.2989 -2.5388 -0.1167 10 7 2.2043 -3.6522 0.1292 11 6 1.5036 -4.9387 0.1283 12 1 0.6527 -4.8886 -0.5512 13 6 1.0094 -5.2514 1.5421 14 6 2.4602 -6.0402 -0.3328 15 7 3.0255 -5.6820 -1.6360 16 6 2.3473 -6.0947 -2.8672 17 6 4.1879 -4.9612 -1.7034 18 1 4.8885 -4.9884 -0.8819 19 6 4.4657 -4.1956 -2.8274 20 7 3.5177 -3.9492 -3.7066 21 14 6.1851 -3.5152 -3.0924 22 1 6.9911 -4.4939 -3.8655 23 1 6.1014 -2.2381 -3.8458 24 1 6.8297 -3.2725 -1.7768 25 1 -0.3633 -0.1096 -1.0218 26 1 -0.3633 -0.8301 0.6058 27 1 -0.3634 0.9397 0.4160 28 1 1.6690 2.1264 -0.0004 29 1 5.3120 0.1418 -0.0036 30 1 4.1994 -2.0546 0.0002 31 1 3.1694 -3.6256 0.2228 32 1 0.3279 -4.4667 1.8706 33 1 0.4884 -6.2088 1.5415 34 1 1.8602 -5.3016 2.2215 35 1 3.2647 -6.1505 0.3943 36 1 1.9166 -6.9811 -0.4188 37 1 1.6893 -5.2943 -3.2055 38 1 3.0891 -6.3054 -3.6375 39 1 1.7588 -6.9918 -2.6745 40 1 3.7118 -3.4139 -4.4919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699447093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:34 Heat of formation + Delta-G solvation = 0.647871 kcal Electronic energy + Delta-G solvation = -22476.300870 eV Core-core repulsion = 19291.003373 eV Total energy + Delta-G solvation = -3185.297497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.69204 -40.09548 -38.04078 -35.81246 -34.34636 -33.77924 -32.77590 -31.30532 -28.31494 -28.02465 -27.37131 -25.74101 -23.76455 -23.19972 -22.02178 -21.28460 -19.15380 -18.51896 -17.76592 -16.84664 -16.67510 -16.39128 -16.12491 -16.03961 -15.58394 -15.10567 -14.87074 -14.58363 -14.45214 -14.32641 -13.89620 -13.65746 -13.45092 -13.21993 -13.09135 -12.81837 -12.74066 -12.52059 -12.47596 -12.16726 -11.97293 -11.93258 -11.67884 -11.15291 -10.83899 -10.60788 -10.30950 -9.97294 -9.78833 -8.73862 -7.77868 -5.26939 -0.27119 0.08474 1.45551 1.49957 1.56623 1.94929 2.32434 2.52527 2.84482 3.37811 3.47129 3.63511 3.75363 3.80660 3.86602 3.99991 4.16465 4.42144 4.45239 4.53793 4.65927 4.74298 4.76520 4.79511 4.85072 4.87708 4.91204 5.00609 5.09784 5.18227 5.30211 5.38562 5.42614 5.64199 5.67219 5.71722 5.75237 6.35390 6.68665 6.87205 7.16993 7.31756 7.89811 8.37273 9.24948 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013446 B = 0.008531 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.913615 B = 3281.188813 C = 4654.838969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.094 4.094 3 C 0.090 3.910 4 N -0.482 5.482 5 C 0.079 3.921 6 C -0.132 4.132 7 C -0.106 4.106 8 C 0.551 3.449 9 O -0.573 6.573 10 N -0.677 5.677 11 C 0.121 3.879 12 H 0.043 0.957 13 C -0.146 4.146 14 C 0.140 3.860 15 N -0.609 5.609 16 C 0.176 3.824 17 C -0.250 4.250 18 H 0.081 0.919 19 C -0.040 4.040 20 N -0.931 5.931 21 Si 0.943 3.057 22 H -0.296 1.296 23 H -0.307 1.307 24 H -0.249 1.249 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.192 0.808 29 H 0.184 0.816 30 H 0.144 0.856 31 H 0.405 0.595 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.075 0.925 37 H -0.007 1.007 38 H 0.015 0.985 39 H 0.030 0.970 40 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.570 3.599 11.125 11.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.096 4.096 3 C -0.068 4.068 4 N -0.191 5.191 5 C -0.076 4.076 6 C -0.153 4.153 7 C -0.117 4.117 8 C 0.338 3.662 9 O -0.455 6.455 10 N -0.325 5.325 11 C 0.014 3.986 12 H 0.061 0.939 13 C -0.205 4.205 14 C 0.014 3.986 15 N -0.332 5.332 16 C 0.031 3.969 17 C -0.380 4.380 18 H 0.099 0.901 19 C -0.236 4.236 20 N -0.577 5.577 21 Si 0.772 3.228 22 H -0.224 1.224 23 H -0.235 1.235 24 H -0.172 1.172 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.209 0.791 29 H 0.201 0.799 30 H 0.162 0.838 31 H 0.242 0.758 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.011 0.989 38 H 0.034 0.966 39 H 0.048 0.952 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.931 4.365 10.906 11.905 hybrid contribution 0.775 -0.443 -1.063 1.388 sum -1.156 3.922 9.844 10.659 Atomic orbital electron populations 1.20861 0.88536 1.03985 1.02831 1.21348 0.99036 0.92580 0.96678 1.23143 0.89644 0.97914 0.96064 1.67586 1.08833 1.31932 1.10711 1.23065 1.01666 0.86767 0.96123 1.22530 0.93769 1.01061 0.97920 1.20453 0.94597 0.94110 1.02530 1.18368 0.86726 0.84645 0.76488 1.90624 1.14825 1.87719 1.52332 1.45692 1.11177 1.05099 1.70553 1.21785 0.95725 0.84102 0.97021 0.93880 1.22031 1.01387 1.01965 0.95125 1.21415 0.95317 0.94799 0.87110 1.44087 1.25901 1.62447 1.00732 1.20490 0.94420 0.93987 0.88015 1.19412 0.95186 1.19958 1.03468 0.90146 1.25632 0.99680 0.99043 0.99220 1.70249 1.32115 1.41999 1.13307 0.85620 0.81555 0.76692 0.78886 1.22382 1.23463 1.17209 0.91871 0.90638 0.88715 0.79107 0.79905 0.83814 0.75770 0.94101 0.89843 0.91107 0.91261 0.90644 0.98911 0.96635 0.95176 0.95014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.02 8.84 71.24 0.63 -2.39 16 2 C -0.09 -2.96 5.93 -19.50 -0.12 -3.08 16 3 C 0.09 2.47 10.83 84.68 0.92 3.39 16 4 N -0.48 -14.39 10.34 -196.00 -2.03 -16.42 16 5 C 0.08 2.33 11.17 84.66 0.95 3.28 16 6 C -0.13 -4.34 9.60 22.63 0.22 -4.12 16 7 C -0.11 -3.83 5.91 -19.88 -0.12 -3.94 16 8 C 0.55 22.17 7.70 86.87 0.67 22.84 16 9 O -0.57 -25.36 13.20 -3.75 -0.05 -25.41 16 10 N -0.68 -25.39 4.44 -445.13 -1.98 -27.37 16 11 C 0.12 4.27 2.88 44.99 0.13 4.40 16 12 H 0.04 1.83 7.58 -2.39 -0.02 1.82 16 13 C -0.15 -3.95 9.48 71.98 0.68 -3.27 16 14 C 0.14 4.89 5.36 86.38 0.46 5.36 16 15 N -0.61 -27.54 2.81 -726.94 -2.04 -29.58 16 16 C 0.18 8.46 9.03 127.77 1.15 9.62 16 17 C -0.25 -11.99 7.98 84.03 0.67 -11.32 16 18 H 0.08 3.58 7.86 -2.91 -0.02 3.56 16 19 C -0.04 -2.05 5.08 84.86 0.43 -1.62 16 20 N -0.93 -53.38 10.83 21.65 0.23 -53.14 16 21 Si 0.94 41.80 29.57 68.60 2.03 43.82 16 22 H -0.30 -13.45 7.11 99.48 0.71 -12.75 16 23 H -0.31 -14.39 7.11 99.48 0.71 -13.68 16 24 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 25 H 0.06 1.96 8.14 -2.38 -0.02 1.95 16 26 H 0.07 2.48 5.95 -2.39 -0.01 2.47 16 27 H 0.09 1.93 8.06 -2.39 -0.02 1.91 16 28 H 0.19 3.74 8.06 -2.91 -0.02 3.72 16 29 H 0.18 4.23 8.06 -2.91 -0.02 4.21 16 30 H 0.14 4.57 6.59 -2.91 -0.02 4.55 16 31 H 0.41 14.68 5.58 -92.71 -0.52 14.17 16 32 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 2.17 8.04 -2.38 -0.02 2.15 16 36 H 0.08 2.32 7.87 -2.39 -0.02 2.30 16 37 H -0.01 -0.41 7.38 -2.39 -0.02 -0.43 16 38 H 0.01 0.79 7.37 -2.39 -0.02 0.77 16 39 H 0.03 1.22 7.85 -2.39 -0.02 1.20 16 40 H 0.24 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -65.67 329.42 3.37 -62.31 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.52 Total: 26.65 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 6.68 Total: 19.14 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -5.81 Total: -126.51 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.05 Total: -25.41 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -65.67 3.37 -62.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699447093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.956 kcal (2) G-P(sol) polarization free energy of solvation -65.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds