Wall clock time and date at job start Mon Mar 30 2020 02:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38165 * 120.49974 * 2 1 4 4 N 1.31800 * 120.89723 * 179.97438 * 3 2 1 5 5 C 1.31830 * 122.04491 * 0.02562 * 4 3 2 6 6 C 1.38126 * 120.89989 * 0.02562 * 5 4 3 7 7 C 1.39795 * 120.49911 * 179.97438 * 2 1 3 8 8 C 1.48150 * 120.92248 * 0.04611 * 7 2 1 9 9 O 1.21517 * 120.00079 * 353.63557 * 8 7 2 10 10 N 1.34775 * 119.99882 * 173.63134 * 8 7 2 11 11 C 1.46508 * 119.99866 * 180.02562 * 10 8 7 12 12 H 1.08990 * 109.47107 * 324.99930 * 11 10 8 13 13 C 1.53004 * 109.47036 * 85.00016 * 11 10 8 14 14 C 1.52997 * 109.47074 * 204.99915 * 11 10 8 15 15 N 1.46493 * 109.47221 * 54.99817 * 14 11 10 16 16 C 1.46504 * 120.00462 * 270.00350 * 15 14 11 17 17 C 1.36946 * 119.99926 * 89.99795 * 15 14 11 18 18 H 1.08004 * 119.99640 * 23.62951 * 17 15 14 19 19 C 1.38811 * 119.99946 * 203.62163 * 17 15 14 20 20 N 1.31617 * 120.00356 * 12.76779 * 19 17 15 21 21 Si 1.86798 * 119.99826 * 192.76021 * 19 17 15 22 22 H 1.48504 * 109.47121 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47298 * 120.00124 * 21 19 17 24 24 H 1.48504 * 109.47243 * 240.00707 * 21 19 17 25 25 H 1.08995 * 109.47455 * 263.99807 * 1 2 3 26 26 H 1.09003 * 109.46932 * 23.99935 * 1 2 3 27 27 H 1.09003 * 109.46814 * 143.99875 * 1 2 3 28 28 H 1.08002 * 119.55217 * 359.97438 * 3 2 1 29 29 H 1.07994 * 119.55020 * 180.02562 * 5 4 3 30 30 H 1.07990 * 120.50130 * 179.97438 * 6 5 4 31 31 H 0.96996 * 120.00394 * 0.02562 * 10 8 7 32 32 H 1.08997 * 109.46916 * 59.99766 * 13 11 10 33 33 H 1.08990 * 109.47074 * 179.97438 * 13 11 10 34 34 H 1.09001 * 109.46984 * 300.00357 * 13 11 10 35 35 H 1.08993 * 109.47164 * 175.00396 * 14 11 10 36 36 H 1.09000 * 109.46880 * 295.00042 * 14 11 10 37 37 H 1.08994 * 109.47233 * 95.27167 * 16 15 14 38 38 H 1.08998 * 109.47266 * 215.27595 * 16 15 14 39 39 H 1.08998 * 109.46897 * 335.27456 * 16 15 14 40 40 H 0.96999 * 120.00142 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5263 1.1996 0.0005 5 6 4.2335 0.0871 0.0005 6 6 3.6138 -1.1474 -0.0005 7 6 2.2166 -1.2045 0.0005 8 6 1.5079 -2.5055 0.0001 9 8 0.2987 -2.5388 0.1159 10 7 2.2043 -3.6522 -0.1288 11 6 1.5034 -4.9387 -0.1298 12 1 0.6517 -4.8890 0.5484 13 6 1.0112 -5.2503 -1.5447 14 6 2.4593 -6.0406 0.3318 15 7 3.0228 -5.6834 1.6360 16 6 4.2663 -4.9124 1.7104 17 6 2.3871 -6.0700 2.7857 18 1 1.7236 -6.9222 2.7754 19 6 2.5957 -5.3669 3.9642 20 7 3.1934 -4.1947 3.9342 21 14 2.0278 -6.0843 5.5927 22 1 1.3892 -7.4040 5.3565 23 1 3.1964 -6.2545 6.4931 24 1 1.0467 -5.1650 6.2234 25 1 -0.3634 -0.1074 1.0220 26 1 -0.3633 0.9389 -0.4180 27 1 -0.3633 -0.8314 -0.6041 28 1 1.6692 2.1263 -0.0004 29 1 5.3121 0.1416 0.0014 30 1 4.1994 -2.0547 -0.0009 31 1 3.1695 -3.6257 -0.2210 32 1 1.8630 -5.3000 -2.2229 33 1 0.4902 -6.2076 -1.5455 34 1 0.3303 -4.4652 -1.8736 35 1 1.9155 -6.9814 0.4162 36 1 3.2648 -6.1504 -0.3943 37 1 4.0315 -3.8535 1.8178 38 1 4.8488 -5.2444 2.5698 39 1 4.8440 -5.0658 0.7989 40 1 3.3388 -3.7032 4.7577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699447094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:37 Heat of formation + Delta-G solvation = 20.769323 kcal Electronic energy + Delta-G solvation = -22227.257661 eV Core-core repulsion = 19042.832696 eV Total energy + Delta-G solvation = -3184.424965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.48949 -38.78316 -36.44486 -34.19689 -33.16240 -32.43552 -31.01723 -30.00582 -27.19501 -26.24505 -25.65445 -24.51991 -22.40846 -21.71038 -20.52872 -19.99473 -17.74107 -16.89203 -16.42804 -15.32421 -15.20319 -15.09178 -14.89935 -14.62253 -13.91840 -13.57927 -13.43311 -13.28405 -13.14076 -12.91469 -12.52135 -12.34209 -12.16796 -11.86818 -11.50198 -11.41005 -11.13935 -10.89436 -10.80330 -10.60162 -10.26781 -10.00606 -9.90864 -9.83817 -9.62371 -9.05218 -8.83389 -8.63887 -8.41860 -6.79082 -5.76501 -3.22941 0.93944 1.18865 3.28151 3.36257 3.43994 3.45538 3.59986 4.02993 4.47832 4.48862 4.82639 4.92197 4.96955 5.11352 5.30471 5.44075 5.48562 5.62967 5.73692 5.77209 5.82059 5.93419 5.94598 5.97924 6.05213 6.16747 6.22556 6.42731 6.45132 6.53279 6.57874 6.73200 6.83443 7.09773 7.24128 7.58798 7.77674 7.97549 8.01394 8.35126 8.67966 9.18654 9.81221 10.29130 11.28423 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.006072 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.173846 B = 4610.236193 C = 5171.313650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.081 4.081 3 C 0.086 3.914 4 N -0.472 5.472 5 C 0.083 3.917 6 C -0.128 4.128 7 C -0.082 4.082 8 C 0.560 3.440 9 O -0.536 6.536 10 N -0.688 5.688 11 C 0.117 3.883 12 H 0.088 0.912 13 C -0.159 4.159 14 C 0.142 3.858 15 N -0.596 5.596 16 C 0.159 3.841 17 C -0.257 4.257 18 H 0.068 0.932 19 C 0.006 3.994 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.291 1.291 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.157 0.843 29 H 0.159 0.841 30 H 0.139 0.861 31 H 0.394 0.606 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.042 0.958 37 H 0.033 0.967 38 H 0.041 0.959 39 H -0.005 1.005 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.433 5.437 -11.132 12.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.084 4.084 3 C -0.072 4.072 4 N -0.181 5.181 5 C -0.073 4.073 6 C -0.148 4.148 7 C -0.093 4.093 8 C 0.346 3.654 9 O -0.415 6.415 10 N -0.338 5.338 11 C 0.009 3.991 12 H 0.106 0.894 13 C -0.218 4.218 14 C 0.014 3.986 15 N -0.319 5.319 16 C 0.014 3.986 17 C -0.387 4.387 18 H 0.086 0.914 19 C -0.193 4.193 20 N -0.547 5.547 21 Si 0.733 3.267 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.218 1.218 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.114 0.886 28 H 0.175 0.825 29 H 0.176 0.824 30 H 0.156 0.844 31 H 0.229 0.771 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.014 0.986 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.089 6.249 -10.887 12.553 hybrid contribution -0.145 -1.015 1.141 1.533 sum -0.056 5.235 -9.746 11.063 Atomic orbital electron populations 1.20956 0.89286 1.02904 1.03948 1.21089 0.98332 0.92530 0.96402 1.22634 0.89826 0.97197 0.97508 1.67498 1.08291 1.31858 1.10430 1.22639 1.00379 0.87300 0.96991 1.22368 0.94093 1.00158 0.98214 1.20380 0.93798 0.94321 1.00841 1.17996 0.86949 0.83589 0.76872 1.90672 1.13688 1.87047 1.50094 1.45708 1.10470 1.05598 1.71976 1.21929 0.97749 0.83813 0.95575 0.89419 1.22154 1.00774 1.01478 0.97407 1.21211 0.94406 0.94998 0.88016 1.43887 1.23603 1.64041 1.00321 1.20873 0.86093 0.96058 0.95577 1.19195 1.24628 1.08388 0.86463 0.91378 1.25014 1.00291 0.95347 0.98630 1.70036 1.46615 1.11929 1.26100 0.86218 0.77925 0.78439 0.84147 1.20306 1.21666 1.21789 0.90410 0.92340 0.88638 0.82535 0.82380 0.84357 0.77051 0.93176 0.91939 0.92939 0.92125 0.93997 0.94897 0.93991 0.98612 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 8.85 36.01 0.32 -1.29 16 2 C -0.08 -1.23 5.93 -104.06 -0.62 -1.85 16 3 C 0.09 1.18 10.84 -17.59 -0.19 0.99 16 4 N -0.47 -6.88 10.34 -13.31 -0.14 -7.02 16 5 C 0.08 1.13 11.17 -17.59 -0.20 0.93 16 6 C -0.13 -1.87 9.60 -39.02 -0.37 -2.25 16 7 C -0.08 -1.38 5.91 -104.65 -0.62 -2.00 16 8 C 0.56 10.65 7.70 -12.19 -0.09 10.55 16 9 O -0.54 -11.39 13.19 5.35 0.07 -11.32 16 10 N -0.69 -12.30 4.38 -54.65 -0.24 -12.53 16 11 C 0.12 2.12 2.88 -67.93 -0.20 1.92 16 12 H 0.09 1.93 7.58 -51.93 -0.39 1.54 16 13 C -0.16 -2.31 9.48 37.16 0.35 -1.95 16 14 C 0.14 2.66 5.33 -4.05 -0.02 2.64 16 15 N -0.60 -13.93 2.78 -181.13 -0.50 -14.44 16 16 C 0.16 3.56 7.60 59.85 0.45 4.01 16 17 C -0.26 -6.85 9.65 -15.06 -0.15 -6.99 16 18 H 0.07 1.80 7.85 -52.48 -0.41 1.38 16 19 C 0.01 0.16 5.11 -17.43 -0.09 0.07 16 20 N -0.90 -25.69 10.73 55.49 0.60 -25.10 16 21 Si 0.90 21.91 29.57 -169.99 -5.03 16.89 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 27 H 0.10 1.51 5.94 -51.93 -0.31 1.20 16 28 H 0.16 1.67 8.06 -52.49 -0.42 1.24 16 29 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.14 1.82 6.58 -52.49 -0.35 1.48 16 31 H 0.39 6.45 5.37 -40.82 -0.22 6.23 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 36 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 37 H 0.03 0.79 6.90 -51.93 -0.36 0.43 16 38 H 0.04 1.04 7.39 -51.93 -0.38 0.66 16 39 H 0.00 -0.09 7.83 -51.93 -0.41 -0.49 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -31.46 328.74 -7.45 -38.91 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.74 Total: 4.88 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -1.42 Total: 4.79 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.28 Total: -59.09 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.07 Total: -11.32 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.46 -7.45 -38.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699447094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.677 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds