Wall clock time and date at job start Mon Mar 30 2020 02:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38165 * 120.49974 * 2 1 4 4 N 1.31800 * 120.89723 * 179.97438 * 3 2 1 5 5 C 1.31830 * 122.04491 * 0.02562 * 4 3 2 6 6 C 1.38126 * 120.89989 * 0.02562 * 5 4 3 7 7 C 1.39795 * 120.49911 * 179.97438 * 2 1 3 8 8 C 1.48150 * 120.92248 * 0.04611 * 7 2 1 9 9 O 1.21517 * 120.00079 * 353.63557 * 8 7 2 10 10 N 1.34775 * 119.99882 * 173.63134 * 8 7 2 11 11 C 1.46508 * 119.99866 * 180.02562 * 10 8 7 12 12 H 1.08990 * 109.47107 * 324.99930 * 11 10 8 13 13 C 1.53004 * 109.47036 * 85.00016 * 11 10 8 14 14 C 1.52997 * 109.47074 * 204.99915 * 11 10 8 15 15 N 1.46493 * 109.47221 * 54.99817 * 14 11 10 16 16 C 1.46504 * 120.00462 * 270.00350 * 15 14 11 17 17 C 1.36946 * 119.99926 * 89.99795 * 15 14 11 18 18 H 1.08004 * 119.99640 * 23.62951 * 17 15 14 19 19 C 1.38811 * 119.99946 * 203.62163 * 17 15 14 20 20 N 1.31617 * 120.00356 * 12.76779 * 19 17 15 21 21 Si 1.86798 * 119.99826 * 192.76021 * 19 17 15 22 22 H 1.48504 * 109.47121 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47298 * 120.00124 * 21 19 17 24 24 H 1.48504 * 109.47243 * 240.00707 * 21 19 17 25 25 H 1.08995 * 109.47455 * 263.99807 * 1 2 3 26 26 H 1.09003 * 109.46932 * 23.99935 * 1 2 3 27 27 H 1.09003 * 109.46814 * 143.99875 * 1 2 3 28 28 H 1.08002 * 119.55217 * 359.97438 * 3 2 1 29 29 H 1.07994 * 119.55020 * 180.02562 * 5 4 3 30 30 H 1.07990 * 120.50130 * 179.97438 * 6 5 4 31 31 H 0.96996 * 120.00394 * 0.02562 * 10 8 7 32 32 H 1.08997 * 109.46916 * 59.99766 * 13 11 10 33 33 H 1.08990 * 109.47074 * 179.97438 * 13 11 10 34 34 H 1.09001 * 109.46984 * 300.00357 * 13 11 10 35 35 H 1.08993 * 109.47164 * 175.00396 * 14 11 10 36 36 H 1.09000 * 109.46880 * 295.00042 * 14 11 10 37 37 H 1.08994 * 109.47233 * 95.27167 * 16 15 14 38 38 H 1.08998 * 109.47266 * 215.27595 * 16 15 14 39 39 H 1.08998 * 109.46897 * 335.27456 * 16 15 14 40 40 H 0.96999 * 120.00142 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5263 1.1996 0.0005 5 6 4.2335 0.0871 0.0005 6 6 3.6138 -1.1474 -0.0005 7 6 2.2166 -1.2045 0.0005 8 6 1.5079 -2.5055 0.0001 9 8 0.2987 -2.5388 0.1159 10 7 2.2043 -3.6522 -0.1288 11 6 1.5034 -4.9387 -0.1298 12 1 0.6517 -4.8890 0.5484 13 6 1.0112 -5.2503 -1.5447 14 6 2.4593 -6.0406 0.3318 15 7 3.0228 -5.6834 1.6360 16 6 4.2663 -4.9124 1.7104 17 6 2.3871 -6.0700 2.7857 18 1 1.7236 -6.9222 2.7754 19 6 2.5957 -5.3669 3.9642 20 7 3.1934 -4.1947 3.9342 21 14 2.0278 -6.0843 5.5927 22 1 1.3892 -7.4040 5.3565 23 1 3.1964 -6.2545 6.4931 24 1 1.0467 -5.1650 6.2234 25 1 -0.3634 -0.1074 1.0220 26 1 -0.3633 0.9389 -0.4180 27 1 -0.3633 -0.8314 -0.6041 28 1 1.6692 2.1263 -0.0004 29 1 5.3121 0.1416 0.0014 30 1 4.1994 -2.0547 -0.0009 31 1 3.1695 -3.6257 -0.2210 32 1 1.8630 -5.3000 -2.2229 33 1 0.4902 -6.2076 -1.5455 34 1 0.3303 -4.4652 -1.8736 35 1 1.9155 -6.9814 0.4162 36 1 3.2648 -6.1504 -0.3943 37 1 4.0315 -3.8535 1.8178 38 1 4.8488 -5.2444 2.5698 39 1 4.8440 -5.0658 0.7989 40 1 3.3388 -3.7032 4.7577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699447094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:37 Heat of formation + Delta-G solvation = 0.748122 kcal Electronic energy + Delta-G solvation = -22228.125846 eV Core-core repulsion = 19042.832696 eV Total energy + Delta-G solvation = -3185.293149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.72041 -40.13227 -38.08055 -35.87589 -34.35715 -33.75860 -32.78222 -31.41717 -28.33609 -27.97290 -27.41136 -25.76720 -23.75332 -23.20150 -21.98702 -21.46061 -19.04309 -18.77784 -17.74086 -16.88154 -16.68202 -16.45903 -16.14802 -16.03781 -15.54477 -15.20778 -14.92967 -14.61251 -14.48578 -14.30702 -13.80981 -13.66371 -13.51069 -13.24881 -13.09093 -12.83607 -12.67730 -12.52712 -12.50394 -12.30696 -12.03312 -11.82958 -11.72270 -11.17093 -10.84967 -10.65575 -10.31957 -10.00285 -9.85491 -8.72346 -7.82737 -5.28903 -0.27966 0.09774 1.41307 1.44295 1.52496 1.92053 2.24350 2.49978 2.84706 3.31279 3.48664 3.60982 3.72623 3.78689 3.85952 3.99946 4.17461 4.39417 4.43309 4.51775 4.64253 4.74507 4.76041 4.78877 4.82857 4.86729 4.89936 5.00269 5.09550 5.17788 5.34768 5.36807 5.41488 5.64548 5.65543 5.68699 5.78009 6.33980 6.59047 6.89233 7.17528 7.25735 7.89682 8.29934 9.18915 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.006072 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.173846 B = 4610.236193 C = 5171.313650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.094 4.094 3 C 0.091 3.909 4 N -0.482 5.482 5 C 0.086 3.914 6 C -0.131 4.131 7 C -0.108 4.108 8 C 0.550 3.450 9 O -0.570 6.570 10 N -0.685 5.685 11 C 0.122 3.878 12 H 0.040 0.960 13 C -0.146 4.146 14 C 0.141 3.859 15 N -0.610 5.610 16 C 0.170 3.830 17 C -0.257 4.257 18 H 0.067 0.933 19 C -0.049 4.049 20 N -0.927 5.927 21 Si 0.956 3.044 22 H -0.267 1.267 23 H -0.290 1.290 24 H -0.302 1.302 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.189 0.811 29 H 0.191 0.809 30 H 0.150 0.850 31 H 0.402 0.598 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.015 0.985 38 H 0.009 0.991 39 H 0.039 0.961 40 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.363 5.546 -12.583 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.097 4.097 3 C -0.067 4.067 4 N -0.191 5.191 5 C -0.070 4.070 6 C -0.151 4.151 7 C -0.119 4.119 8 C 0.338 3.662 9 O -0.451 6.451 10 N -0.334 5.334 11 C 0.015 3.985 12 H 0.058 0.942 13 C -0.204 4.204 14 C 0.014 3.986 15 N -0.333 5.333 16 C 0.025 3.975 17 C -0.388 4.388 18 H 0.085 0.915 19 C -0.244 4.244 20 N -0.574 5.574 21 Si 0.786 3.214 22 H -0.191 1.191 23 H -0.217 1.217 24 H -0.230 1.230 25 H 0.079 0.921 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.206 0.794 29 H 0.208 0.792 30 H 0.167 0.833 31 H 0.239 0.761 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.033 0.967 38 H 0.028 0.972 39 H 0.058 0.942 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.031 6.325 -12.373 13.934 hybrid contribution -0.427 -1.069 1.526 1.912 sum 0.605 5.255 -10.847 12.068 Atomic orbital electron populations 1.20867 0.88927 1.03927 1.02724 1.21309 0.98837 0.92751 0.96833 1.23101 0.89769 0.97764 0.96020 1.67604 1.08645 1.32221 1.10643 1.23161 1.01871 0.86515 0.95472 1.22530 0.93251 1.01305 0.98043 1.20426 0.94933 0.93672 1.02893 1.18460 0.86815 0.84683 0.76270 1.90651 1.15114 1.87667 1.51654 1.45695 1.10848 1.05329 1.71531 1.21746 0.96032 0.83836 0.96903 0.94169 1.22022 1.01558 1.01833 0.95030 1.21395 0.95529 0.95023 0.86617 1.44089 1.24056 1.63943 1.01192 1.20678 0.85847 0.94689 0.96247 1.19475 1.23642 1.07866 0.87819 0.91543 1.25649 1.01482 0.95970 1.01319 1.70183 1.48322 1.12929 1.25918 0.85366 0.77120 0.77960 0.80989 1.19114 1.21706 1.22987 0.92054 0.88763 0.90773 0.79375 0.79192 0.83257 0.76097 0.90594 0.90256 0.94108 0.91574 0.90440 0.96725 0.97232 0.94225 0.94811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.04 8.85 71.24 0.63 -2.41 16 2 C -0.09 -2.84 5.93 -19.50 -0.12 -2.95 16 3 C 0.09 2.32 10.84 84.68 0.92 3.24 16 4 N -0.48 -13.00 10.34 -196.01 -2.03 -15.03 16 5 C 0.09 2.14 11.17 84.67 0.95 3.08 16 6 C -0.13 -3.68 9.60 22.63 0.22 -3.46 16 7 C -0.11 -3.62 5.91 -19.88 -0.12 -3.74 16 8 C 0.55 21.35 7.70 86.88 0.67 22.02 16 9 O -0.57 -25.24 13.19 -3.77 -0.05 -25.29 16 10 N -0.68 -24.22 4.38 -445.11 -1.95 -26.17 16 11 C 0.12 4.36 2.88 44.99 0.13 4.49 16 12 H 0.04 1.82 7.58 -2.39 -0.02 1.81 16 13 C -0.15 -3.95 9.48 71.98 0.68 -3.27 16 14 C 0.14 5.01 5.33 86.38 0.46 5.47 16 15 N -0.61 -28.04 2.78 -726.96 -2.02 -30.06 16 16 C 0.17 7.48 7.60 127.77 0.97 8.45 16 17 C -0.26 -13.72 9.65 84.03 0.81 -12.91 16 18 H 0.07 3.50 7.85 -2.91 -0.02 3.47 16 19 C -0.05 -2.70 5.11 84.86 0.43 -2.27 16 20 N -0.93 -53.85 10.73 21.65 0.23 -53.62 16 21 Si 0.96 45.70 29.57 68.60 2.03 47.73 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.09 1.89 8.06 -2.39 -0.02 1.87 16 27 H 0.07 2.43 5.94 -2.39 -0.01 2.41 16 28 H 0.19 3.45 8.06 -2.91 -0.02 3.43 16 29 H 0.19 3.37 8.06 -2.91 -0.02 3.35 16 30 H 0.15 3.73 6.58 -2.92 -0.02 3.71 16 31 H 0.40 12.64 5.37 -92.71 -0.50 12.14 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 2.29 8.03 -2.39 -0.02 2.27 16 36 H 0.08 2.23 7.86 -2.39 -0.02 2.22 16 37 H 0.01 0.69 6.90 -2.39 -0.02 0.68 16 38 H 0.01 0.45 7.39 -2.39 -0.02 0.43 16 39 H 0.04 1.37 7.83 -2.39 -0.02 1.35 16 40 H 0.24 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -69.74 328.74 3.39 -66.35 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.54 Total: 20.36 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 6.63 Total: 15.73 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -5.76 Total: -124.87 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.29 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -69.74 3.39 -66.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699447094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.097 kcal (2) G-P(sol) polarization free energy of solvation -69.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds