Wall clock time and date at job start Mon Mar 30 2020 01:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34656 * 125.80690 * 2 1 4 4 H 0.97010 * 124.84990 * 0.02641 * 3 2 1 5 5 C 1.36443 * 110.30222 * 180.29114 * 3 2 1 6 6 C 1.34493 * 108.85577 * 359.75517 * 5 3 2 7 7 C 1.36777 * 125.79811 * 179.86889 * 2 1 3 8 8 C 1.47258 * 126.94128 * 359.97438 * 7 2 1 9 9 O 1.21620 * 120.00253 * 352.17977 * 8 7 2 10 10 N 1.34782 * 119.99519 * 172.18501 * 8 7 2 11 11 C 1.47418 * 125.65410 * 359.77721 * 10 8 7 12 12 C 1.54904 * 104.83516 * 204.15163 * 11 10 8 13 13 C 1.55151 * 101.58304 * 322.99133 * 12 11 10 14 14 C 1.47024 * 125.64393 * 179.80838 * 10 8 7 15 15 H 1.09001 * 110.01623 * 59.42631 * 14 10 8 16 16 C 1.53005 * 109.88387 * 298.33300 * 14 10 8 17 17 N 1.46498 * 109.47402 * 176.62305 * 16 14 10 18 18 C 1.36931 * 120.00269 * 174.87841 * 17 16 14 19 19 H 1.08006 * 119.99951 * 5.29211 * 18 17 16 20 20 C 1.38807 * 120.00092 * 185.29616 * 18 17 16 21 21 N 1.31626 * 119.99900 * 185.61298 * 20 18 17 22 22 Si 1.86800 * 120.00067 * 5.61556 * 20 18 17 23 23 H 1.48499 * 109.47141 * 265.54508 * 22 20 18 24 24 H 1.48495 * 109.47003 * 25.54741 * 22 20 18 25 25 H 1.48499 * 109.47112 * 145.54547 * 22 20 18 26 26 H 1.09000 * 109.47198 * 273.84849 * 1 2 3 27 27 H 1.08997 * 109.47090 * 33.84684 * 1 2 3 28 28 H 1.08999 * 109.47163 * 153.84355 * 1 2 3 29 29 H 1.08004 * 125.57735 * 179.72313 * 5 3 2 30 30 H 1.07996 * 126.83398 * 179.97438 * 6 5 3 31 31 H 1.08997 * 110.36603 * 85.31086 * 11 10 8 32 32 H 1.09003 * 110.45924 * 323.04161 * 11 10 8 33 33 H 1.08998 * 111.00467 * 204.91272 * 12 11 10 34 34 H 1.09009 * 111.00042 * 81.06765 * 12 11 10 35 35 H 1.09000 * 110.72193 * 277.13693 * 13 12 11 36 36 H 1.09002 * 110.72179 * 153.86043 * 13 12 11 37 37 H 1.08997 * 109.47129 * 56.62144 * 16 14 10 38 38 H 1.09003 * 109.46704 * 296.62497 * 16 14 10 39 39 H 0.97000 * 119.99712 * 354.87072 * 17 16 14 40 40 H 0.97001 * 119.99588 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0920 0.0000 4 1 1.9735 2.0074 0.0004 5 6 3.6095 0.7273 -0.0065 6 6 3.6882 -0.6153 -0.0054 7 6 2.3070 -1.1094 0.0025 8 6 1.8701 -2.5156 0.0063 9 8 0.6932 -2.7864 0.1507 10 7 2.7745 -3.5026 -0.1503 11 6 4.2248 -3.3173 -0.3385 12 6 4.6975 -4.6005 -1.0661 13 6 3.8114 -5.6832 -0.3955 14 6 2.4778 -4.9426 -0.1622 15 1 1.7800 -5.1731 -0.9672 16 6 1.8781 -5.3615 1.1817 17 7 1.5116 -6.7791 1.1323 18 6 1.0503 -7.4066 2.2585 19 1 0.8754 -6.8383 3.1601 20 6 0.8075 -8.7732 2.2414 21 7 0.2607 -9.3576 3.2864 22 14 1.2569 -9.7829 0.7355 23 1 0.0704 -9.9081 -0.1487 24 1 2.3553 -9.1091 -0.0025 25 1 1.7024 -11.1343 1.1604 26 1 -0.3633 0.0690 1.0253 27 1 -0.3633 0.8535 -0.5724 28 1 -0.3633 -0.9224 -0.4530 29 1 4.4498 1.4058 -0.0122 30 1 4.5889 -1.2111 -0.0098 31 1 4.7234 -3.2226 0.6261 32 1 4.4200 -2.4387 -0.9534 33 1 5.7545 -4.7893 -0.8783 34 1 4.4972 -4.5393 -2.1359 35 1 4.2451 -6.0042 0.5516 36 1 3.6689 -6.5329 -1.0632 37 1 0.9899 -4.7635 1.3854 38 1 2.6119 -5.2032 1.9720 39 1 1.5957 -7.2731 0.3018 40 1 0.0914 -10.3126 3.2745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699745337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:54 Heat of formation + Delta-G solvation = 35.603510 kcal Electronic energy + Delta-G solvation = -21721.395658 eV Core-core repulsion = 18537.613952 eV Total energy + Delta-G solvation = -3183.781706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.38750 -39.55955 -37.11119 -34.60849 -32.16349 -31.61621 -31.30113 -30.67848 -28.92486 -26.57624 -25.18902 -23.62716 -21.86654 -21.72994 -20.93928 -19.95849 -18.46909 -17.79261 -17.22402 -16.34283 -15.82121 -15.07366 -14.71405 -14.36811 -14.00939 -13.82984 -13.69311 -13.40336 -13.33339 -12.99276 -12.71073 -12.65213 -12.51522 -12.47476 -12.13976 -11.65491 -11.49593 -11.18190 -10.86617 -10.78758 -10.54377 -10.37067 -10.08556 -9.53720 -9.47597 -8.95480 -8.74298 -8.44890 -8.15173 -7.09484 -5.66977 -3.01225 1.76517 2.30654 2.94031 3.35160 3.45027 3.47514 3.52427 3.70639 4.66013 4.67962 4.68945 4.71577 4.85176 5.05156 5.08665 5.24750 5.35513 5.41919 5.49859 5.56158 5.62999 5.64132 5.72486 5.74841 5.83776 5.88972 5.96954 6.09143 6.11959 6.16348 6.41139 6.57959 6.63859 6.80976 6.88108 7.07815 7.27928 7.87219 8.11648 8.52083 8.58848 9.32043 10.04023 10.25116 11.51808 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026057 B = 0.004414 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.318641 B = 6341.931946 C = 7046.187335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.103 3.897 3 N -0.555 5.555 4 H 0.414 0.586 5 C -0.022 4.022 6 C -0.178 4.178 7 C -0.225 4.225 8 C 0.601 3.399 9 O -0.539 6.539 10 N -0.606 5.606 11 C 0.094 3.906 12 C -0.136 4.136 13 C -0.125 4.125 14 C 0.129 3.871 15 H 0.073 0.927 16 C 0.150 3.850 17 N -0.751 5.751 18 C -0.236 4.236 19 H 0.089 0.911 20 C 0.003 3.997 21 N -0.936 5.936 22 Si 0.881 3.119 23 H -0.286 1.286 24 H -0.275 1.275 25 H -0.292 1.292 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.167 0.833 30 H 0.155 0.845 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.042 0.958 38 H 0.028 0.972 39 H 0.359 0.641 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.613 22.671 -11.116 27.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.015 4.015 3 N -0.151 5.151 4 H 0.250 0.750 5 C -0.150 4.150 6 C -0.202 4.202 7 C -0.235 4.235 8 C 0.392 3.608 9 O -0.417 6.417 10 N -0.339 5.339 11 C -0.029 4.029 12 C -0.175 4.175 13 C -0.163 4.163 14 C 0.026 3.974 15 H 0.091 0.909 16 C 0.022 3.978 17 N -0.397 5.397 18 C -0.366 4.366 19 H 0.106 0.894 20 C -0.193 4.193 21 N -0.584 5.584 22 Si 0.712 3.288 23 H -0.212 1.212 24 H -0.200 1.200 25 H -0.218 1.218 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.185 0.815 30 H 0.173 0.827 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.191 0.809 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.851 22.683 -10.782 26.978 hybrid contribution 0.335 -0.394 -0.927 1.062 sum 10.186 22.290 -11.710 27.161 Atomic orbital electron populations 1.20581 0.86950 1.04419 1.03347 1.20336 0.93745 0.85562 1.01844 1.41591 1.06284 1.08316 1.58870 0.74981 1.21749 0.85622 0.96501 1.11088 1.22572 0.96388 0.93596 1.07664 1.20129 0.93215 0.91965 1.18205 1.16978 0.84435 0.83281 0.76112 1.90780 1.16654 1.83761 1.50533 1.48184 1.07418 1.05921 1.72416 1.22681 0.81345 0.98775 1.00096 1.22834 0.99975 0.94765 0.99881 1.22700 0.94216 0.97350 1.01998 1.21790 0.96968 0.78993 0.99639 0.90871 1.20960 0.97675 0.86206 0.92946 1.42534 1.80359 1.06538 1.10221 1.19054 1.34979 0.91403 0.91197 0.89360 1.24677 1.01264 0.96355 0.96977 1.69725 1.48841 1.10254 1.29587 0.86542 0.78460 0.80255 0.83586 1.21230 1.20034 1.21822 0.90331 0.92012 0.87929 0.81526 0.82722 0.91407 0.89610 0.90065 0.90912 0.89743 0.90330 0.94041 0.95384 0.80890 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 9.91 36.00 0.36 -0.66 16 2 C 0.10 1.19 7.17 -81.88 -0.59 0.60 16 3 N -0.55 -4.49 5.90 -9.10 -0.05 -4.55 16 4 H 0.41 1.90 8.96 -40.82 -0.37 1.54 16 5 C -0.02 -0.18 11.89 -16.82 -0.20 -0.38 16 6 C -0.18 -1.87 9.26 -37.50 -0.35 -2.22 16 7 C -0.23 -3.12 6.19 -103.35 -0.64 -3.76 16 8 C 0.60 10.35 7.62 -12.59 -0.10 10.25 16 9 O -0.54 -11.11 13.83 5.26 0.07 -11.03 16 10 N -0.61 -9.54 3.06 -164.34 -0.50 -10.05 16 11 C 0.09 1.07 5.25 -2.54 -0.01 1.06 16 12 C -0.14 -1.47 7.08 -24.59 -0.17 -1.64 16 13 C -0.12 -1.83 6.15 -24.90 -0.15 -1.98 16 14 C 0.13 2.30 2.94 -66.95 -0.20 2.10 16 15 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 16 C 0.15 3.34 5.64 -4.04 -0.02 3.32 16 17 N -0.75 -19.20 5.16 -59.91 -0.31 -19.51 16 18 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 19 H 0.09 2.86 8.06 -52.48 -0.42 2.44 16 20 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 21 N -0.94 -30.48 13.97 55.49 0.78 -29.71 16 22 Si 0.88 22.72 27.68 -169.99 -4.71 18.02 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 24 H -0.27 -6.55 6.63 56.52 0.37 -6.17 16 25 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 1.36 6.45 -51.93 -0.34 1.03 16 29 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 30 H 0.16 1.35 5.10 -52.49 -0.27 1.08 16 31 H 0.07 0.73 8.01 -51.93 -0.42 0.32 16 32 H 0.09 0.82 5.36 -51.93 -0.28 0.54 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 35 H 0.08 1.33 7.79 -51.93 -0.40 0.93 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.04 1.04 6.76 -51.93 -0.35 0.69 16 38 H 0.03 0.64 8.06 -51.93 -0.42 0.22 16 39 H 0.36 8.78 5.57 -40.82 -0.23 8.56 16 40 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 320.86 15.07 4.84 4.84 Total: -1.00 -37.05 320.86 -7.82 -44.88 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.61 Total: 7.69 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -2.33 Total: -0.58 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: -0.09 Total: -63.81 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.07 Total: -11.03 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.71 Total: 18.02 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -37.05 -7.82 -44.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699745337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.482 kcal (2) G-P(sol) polarization free energy of solvation -37.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds