Wall clock time and date at job start Mon Mar 30 2020 01:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34656 * 125.80690 * 2 1 4 4 H 0.97010 * 124.84990 * 0.02641 * 3 2 1 5 5 C 1.36443 * 110.30222 * 180.29114 * 3 2 1 6 6 C 1.34493 * 108.85577 * 359.75517 * 5 3 2 7 7 C 1.36777 * 125.79811 * 179.86889 * 2 1 3 8 8 C 1.47258 * 126.94128 * 359.97438 * 7 2 1 9 9 O 1.21620 * 120.00253 * 352.17977 * 8 7 2 10 10 N 1.34782 * 119.99519 * 172.18501 * 8 7 2 11 11 C 1.47418 * 125.65410 * 359.77721 * 10 8 7 12 12 C 1.54904 * 104.83516 * 204.15163 * 11 10 8 13 13 C 1.55151 * 101.58304 * 322.99133 * 12 11 10 14 14 C 1.47024 * 125.64393 * 179.80838 * 10 8 7 15 15 H 1.09001 * 110.01623 * 59.42631 * 14 10 8 16 16 C 1.53005 * 109.88387 * 298.33300 * 14 10 8 17 17 N 1.46498 * 109.47402 * 176.62305 * 16 14 10 18 18 C 1.36931 * 120.00269 * 174.87841 * 17 16 14 19 19 H 1.08006 * 119.99951 * 5.29211 * 18 17 16 20 20 C 1.38807 * 120.00092 * 185.29616 * 18 17 16 21 21 N 1.31626 * 119.99900 * 185.61298 * 20 18 17 22 22 Si 1.86800 * 120.00067 * 5.61556 * 20 18 17 23 23 H 1.48499 * 109.47141 * 265.54508 * 22 20 18 24 24 H 1.48495 * 109.47003 * 25.54741 * 22 20 18 25 25 H 1.48499 * 109.47112 * 145.54547 * 22 20 18 26 26 H 1.09000 * 109.47198 * 273.84849 * 1 2 3 27 27 H 1.08997 * 109.47090 * 33.84684 * 1 2 3 28 28 H 1.08999 * 109.47163 * 153.84355 * 1 2 3 29 29 H 1.08004 * 125.57735 * 179.72313 * 5 3 2 30 30 H 1.07996 * 126.83398 * 179.97438 * 6 5 3 31 31 H 1.08997 * 110.36603 * 85.31086 * 11 10 8 32 32 H 1.09003 * 110.45924 * 323.04161 * 11 10 8 33 33 H 1.08998 * 111.00467 * 204.91272 * 12 11 10 34 34 H 1.09009 * 111.00042 * 81.06765 * 12 11 10 35 35 H 1.09000 * 110.72193 * 277.13693 * 13 12 11 36 36 H 1.09002 * 110.72179 * 153.86043 * 13 12 11 37 37 H 1.08997 * 109.47129 * 56.62144 * 16 14 10 38 38 H 1.09003 * 109.46704 * 296.62497 * 16 14 10 39 39 H 0.97000 * 119.99712 * 354.87072 * 17 16 14 40 40 H 0.97001 * 119.99588 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0920 0.0000 4 1 1.9735 2.0074 0.0004 5 6 3.6095 0.7273 -0.0065 6 6 3.6882 -0.6153 -0.0054 7 6 2.3070 -1.1094 0.0025 8 6 1.8701 -2.5156 0.0063 9 8 0.6932 -2.7864 0.1507 10 7 2.7745 -3.5026 -0.1503 11 6 4.2248 -3.3173 -0.3385 12 6 4.6975 -4.6005 -1.0661 13 6 3.8114 -5.6832 -0.3955 14 6 2.4778 -4.9426 -0.1622 15 1 1.7800 -5.1731 -0.9672 16 6 1.8781 -5.3615 1.1817 17 7 1.5116 -6.7791 1.1323 18 6 1.0503 -7.4066 2.2585 19 1 0.8754 -6.8383 3.1601 20 6 0.8075 -8.7732 2.2414 21 7 0.2607 -9.3576 3.2864 22 14 1.2569 -9.7829 0.7355 23 1 0.0704 -9.9081 -0.1487 24 1 2.3553 -9.1091 -0.0025 25 1 1.7024 -11.1343 1.1604 26 1 -0.3633 0.0690 1.0253 27 1 -0.3633 0.8535 -0.5724 28 1 -0.3633 -0.9224 -0.4530 29 1 4.4498 1.4058 -0.0122 30 1 4.5889 -1.2111 -0.0098 31 1 4.7234 -3.2226 0.6261 32 1 4.4200 -2.4387 -0.9534 33 1 5.7545 -4.7893 -0.8783 34 1 4.4972 -4.5393 -2.1359 35 1 4.2451 -6.0042 0.5516 36 1 3.6689 -6.5329 -1.0632 37 1 0.9899 -4.7635 1.3854 38 1 2.6119 -5.2032 1.9720 39 1 1.5957 -7.2731 0.3018 40 1 0.0914 -10.3126 3.2745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699745337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:53 Heat of formation + Delta-G solvation = 8.161477 kcal Electronic energy + Delta-G solvation = -21722.585634 eV Core-core repulsion = 18537.613952 eV Total energy + Delta-G solvation = -3184.971682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.21644 -40.74874 -38.43426 -36.58449 -33.82958 -32.91427 -32.41158 -31.71062 -30.45199 -27.46192 -26.79210 -24.98993 -23.69921 -22.77013 -21.81065 -21.22291 -19.96723 -19.18675 -18.42038 -17.59835 -16.94860 -16.48209 -16.14253 -15.85323 -15.40267 -15.19429 -14.86964 -14.77957 -14.70223 -14.23469 -13.97411 -13.72229 -13.66789 -13.48361 -13.43141 -13.19893 -12.87737 -12.79519 -12.47883 -12.13967 -11.92604 -11.80512 -11.72942 -11.58366 -11.04188 -10.77475 -9.81249 -9.59848 -9.34855 -9.04621 -8.06198 -5.41686 0.76558 1.36911 1.41634 1.50454 1.59071 1.99037 2.45787 2.47641 2.55933 3.24021 3.56232 3.63746 3.77151 3.94072 3.98071 4.10575 4.27093 4.29803 4.33328 4.37877 4.54101 4.65762 4.68767 4.75428 4.84629 4.93449 5.01011 5.03211 5.06775 5.12547 5.16083 5.28417 5.37959 5.51118 5.70165 5.82250 6.02656 6.16661 6.65329 6.73817 7.02173 7.33546 7.74859 7.99905 9.15685 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026057 B = 0.004414 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.318641 B = 6341.931946 C = 7046.187335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.094 3.906 3 N -0.537 5.537 4 H 0.433 0.567 5 C 0.001 3.999 6 C -0.196 4.196 7 C -0.265 4.265 8 C 0.587 3.413 9 O -0.593 6.593 10 N -0.608 5.608 11 C 0.089 3.911 12 C -0.120 4.120 13 C -0.124 4.124 14 C 0.134 3.866 15 H 0.059 0.941 16 C 0.157 3.843 17 N -0.747 5.747 18 C -0.243 4.243 19 H 0.044 0.956 20 C -0.061 4.061 21 N -0.983 5.983 22 Si 0.959 3.041 23 H -0.280 1.280 24 H -0.240 1.240 25 H -0.288 1.288 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.213 0.787 30 H 0.172 0.828 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.004 0.996 38 H 0.021 0.979 39 H 0.368 0.632 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.883 24.502 -13.745 31.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.025 4.025 3 N -0.134 5.134 4 H 0.273 0.727 5 C -0.126 4.126 6 C -0.219 4.219 7 C -0.275 4.275 8 C 0.380 3.620 9 O -0.475 6.475 10 N -0.341 5.341 11 C -0.032 4.032 12 C -0.157 4.157 13 C -0.162 4.162 14 C 0.030 3.970 15 H 0.077 0.923 16 C 0.029 3.971 17 N -0.393 5.393 18 C -0.374 4.374 19 H 0.062 0.938 20 C -0.252 4.252 21 N -0.633 5.633 22 Si 0.785 3.215 23 H -0.206 1.206 24 H -0.164 1.164 25 H -0.214 1.214 26 H 0.093 0.907 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.189 0.811 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.022 0.978 38 H 0.039 0.961 39 H 0.202 0.798 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.179 24.584 -13.435 30.960 hybrid contribution -0.754 -0.834 0.010 1.125 sum 12.425 23.749 -13.425 29.977 Atomic orbital electron populations 1.20496 0.87076 1.04097 1.03363 1.20372 0.94087 0.86331 1.01742 1.41595 1.06153 1.08472 1.57181 0.72692 1.22428 0.86265 0.96315 1.07630 1.22780 0.95225 0.94889 1.09011 1.20129 0.95801 0.90397 1.21138 1.17719 0.84000 0.85049 0.75225 1.90739 1.18945 1.84796 1.53040 1.48315 1.09381 1.04593 1.71772 1.23005 0.78435 1.00475 1.01318 1.22852 1.00818 0.92027 1.00044 1.22671 0.92892 0.98472 1.02128 1.21592 0.98486 0.81183 0.95749 0.92305 1.20904 0.96111 0.84000 0.96047 1.42394 1.80100 1.07623 1.09160 1.18947 1.35456 0.91758 0.91259 0.93802 1.25610 1.00987 0.97490 1.01139 1.69920 1.50032 1.10755 1.32580 0.85329 0.79195 0.78012 0.79010 1.20628 1.16418 1.21447 0.90670 0.88651 0.91340 0.77066 0.81108 0.90553 0.87013 0.86825 0.89584 0.90899 0.89664 0.97811 0.96104 0.79840 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.02 9.91 71.23 0.71 -1.31 16 2 C 0.09 2.11 7.17 41.78 0.30 2.41 16 3 N -0.54 -6.99 5.90 -182.72 -1.08 -8.07 16 4 H 0.43 2.33 8.96 -92.70 -0.83 1.50 16 5 C 0.00 0.01 11.89 83.12 0.99 1.00 16 6 C -0.20 -3.55 9.26 23.62 0.22 -3.34 16 7 C -0.26 -7.23 6.19 -19.04 -0.12 -7.34 16 8 C 0.59 21.12 7.62 86.61 0.66 21.78 16 9 O -0.59 -26.56 13.83 -4.09 -0.06 -26.62 16 10 N -0.61 -19.28 3.06 -792.08 -2.43 -21.71 16 11 C 0.09 1.81 5.25 86.85 0.46 2.26 16 12 C -0.12 -2.13 7.08 31.98 0.23 -1.90 16 13 C -0.12 -3.40 6.15 31.78 0.20 -3.21 16 14 C 0.13 4.84 2.94 45.34 0.13 4.98 16 15 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 16 C 0.16 7.38 5.64 86.38 0.49 7.86 16 17 N -0.75 -39.28 5.16 -343.45 -1.77 -41.05 16 18 C -0.24 -15.30 10.47 84.03 0.88 -14.42 16 19 H 0.04 3.07 8.06 -2.91 -0.02 3.04 16 20 C -0.06 -3.79 5.50 84.86 0.47 -3.33 16 21 N -0.98 -66.07 13.97 21.65 0.30 -65.77 16 22 Si 0.96 46.97 27.68 68.60 1.90 48.87 16 23 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.24 -10.35 6.63 99.48 0.66 -9.69 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.99 6.45 -2.39 -0.02 1.97 16 29 H 0.21 0.58 8.06 -2.91 -0.02 0.56 16 30 H 0.17 2.35 5.10 -2.91 -0.01 2.33 16 31 H 0.08 1.45 8.01 -2.39 -0.02 1.43 16 32 H 0.11 1.74 5.36 -2.39 -0.01 1.72 16 33 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.07 2.19 7.79 -2.39 -0.02 2.17 16 36 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.00 0.21 6.76 -2.39 -0.02 0.19 16 38 H 0.02 1.00 8.06 -2.39 -0.02 0.98 16 39 H 0.37 17.89 5.57 -92.71 -0.52 17.37 16 40 H 0.26 16.45 8.31 -92.71 -0.77 15.68 16 Total: -1.00 -87.70 320.86 2.14 -85.56 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -0.32 Total: 23.34 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 5.60 Total: 5.45 kcal Atomic # 7 Polarization: -131.63 SS G_CDS: -4.98 Total: -136.60 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.06 Total: -26.62 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.90 Total: 48.87 kcal Total: -87.70 2.14 -85.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699745337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.719 kcal (2) G-P(sol) polarization free energy of solvation -87.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds