Wall clock time and date at job start Mon Mar 30 2020 02:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39827 * 126.45531 * 2 1 4 4 C 1.35457 * 107.86245 * 180.26694 * 3 2 1 5 5 N 1.35533 * 108.87137 * 359.73401 * 4 3 2 6 6 H 0.97000 * 125.67456 * 179.97438 * 5 4 3 7 7 C 1.37651 * 108.64328 * 0.02562 * 5 4 3 8 8 C 1.46680 * 126.22976 * 179.97438 * 7 5 4 9 9 O 1.21694 * 119.99683 * 180.02562 * 8 7 5 10 10 N 1.34766 * 120.00116 * 0.02562 * 8 7 5 11 11 C 1.46503 * 120.00036 * 180.02562 * 10 8 7 12 12 H 1.09004 * 112.84870 * 336.19043 * 11 10 8 13 13 C 1.53777 * 113.61688 * 107.50136 * 11 10 8 14 14 C 1.53780 * 87.08176 * 89.11652 * 13 11 10 15 15 H 1.08998 * 113.69026 * 270.87147 * 14 13 11 16 16 C 1.52998 * 113.61304 * 139.98143 * 14 13 11 17 17 N 1.46506 * 109.47233 * 87.50509 * 16 14 13 18 18 C 1.36931 * 119.99939 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00644 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99715 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99673 * 179.72262 * 20 18 17 22 22 Si 1.86795 * 120.00115 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47274 * 89.99913 * 22 20 18 24 24 H 1.48505 * 109.47015 * 209.99478 * 22 20 18 25 25 H 1.48498 * 109.47362 * 329.99904 * 22 20 18 26 26 C 1.53783 * 87.08298 * 25.43378 * 14 13 11 27 27 H 1.09009 * 109.47186 * 270.18182 * 1 2 3 28 28 H 1.08992 * 109.47405 * 30.18529 * 1 2 3 29 29 H 1.09000 * 109.47202 * 150.18772 * 1 2 3 30 30 H 1.08003 * 126.07294 * 0.02562 * 3 2 1 31 31 H 1.07999 * 125.56230 * 179.71909 * 4 3 2 32 32 H 0.97002 * 120.00657 * 0.02562 * 10 8 7 33 33 H 1.09004 * 113.61324 * 334.56685 * 13 11 10 34 34 H 1.09003 * 113.61267 * 203.66403 * 13 11 10 35 35 H 1.09001 * 109.47671 * 327.50434 * 16 14 13 36 36 H 1.09006 * 109.47297 * 207.50154 * 16 14 13 37 37 H 0.97000 * 119.99307 * 359.97438 * 17 16 14 38 38 H 0.97000 * 120.00043 * 180.02562 * 21 20 18 39 39 H 1.08997 * 113.61509 * 89.11418 * 26 14 13 40 40 H 1.08997 * 113.61297 * 220.02015 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 -0.0060 5 7 3.6283 -0.6625 -0.0038 6 1 4.4190 -1.2244 -0.0074 7 6 2.3262 -1.1089 0.0031 8 6 1.8899 -2.5093 0.0070 9 8 0.7027 -2.7766 0.0127 10 7 2.8036 -3.4999 0.0042 11 6 2.3678 -4.8985 0.0074 12 1 1.3662 -5.0288 0.4173 13 6 2.5834 -5.6142 -1.3365 14 6 3.9817 -5.9931 -0.8207 15 1 4.7483 -5.2527 -1.0492 16 6 4.4042 -7.4176 -1.1856 17 7 5.0455 -7.4146 -2.5029 18 6 5.5094 -8.5851 -3.0412 19 1 5.4031 -9.5104 -2.4946 20 6 6.1165 -8.5822 -4.2895 21 7 6.5673 -9.7064 -4.8046 22 14 6.3011 -6.9816 -5.2347 23 1 7.5942 -6.3434 -4.8797 24 1 6.2712 -7.2616 -6.6928 25 1 5.1849 -6.0675 -4.8831 26 6 3.4062 -5.8660 0.5997 27 1 -0.3634 0.0033 1.0277 28 1 -0.3634 0.8882 -0.5167 29 1 -0.3633 -0.8917 -0.5109 30 1 2.0136 2.1549 0.0004 31 1 4.4971 1.3252 -0.0118 32 1 3.7500 -3.2869 0.0000 33 1 2.6017 -4.9395 -2.1924 34 1 1.9260 -6.4708 -1.4854 35 1 3.5255 -8.0621 -1.2108 36 1 5.1070 -7.7904 -0.4403 37 1 5.1413 -6.5834 -2.9936 38 1 6.9919 -9.7045 -5.6767 39 1 2.9738 -6.7914 0.9800 40 1 4.0888 -5.3946 1.3067 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700635885.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:29 Heat of formation + Delta-G solvation = 37.757508 kcal Electronic energy + Delta-G solvation = -20857.050466 eV Core-core repulsion = 17673.362164 eV Total energy + Delta-G solvation = -3183.688302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.62273 -39.98032 -38.18650 -34.79513 -33.52981 -32.54617 -31.22525 -29.92501 -27.53776 -26.81071 -25.65114 -23.63102 -22.47540 -21.44147 -21.02901 -19.55194 -19.13157 -18.86702 -17.56680 -16.19044 -15.86738 -15.48864 -14.90601 -14.49422 -14.39047 -14.09765 -13.96758 -13.86886 -13.39288 -13.21583 -12.84847 -12.66921 -12.54067 -12.45013 -12.35296 -11.87252 -11.77714 -11.45569 -10.93228 -10.69721 -10.30071 -10.21168 -10.10048 -9.94582 -9.60182 -9.20915 -9.06421 -8.89968 -8.42102 -7.23932 -5.78579 -3.13673 1.21633 2.45779 2.78213 2.92525 3.17948 3.34400 3.36949 3.42684 4.50370 4.56801 4.61267 4.65614 4.71870 4.92522 4.95631 4.96331 5.05248 5.51667 5.52179 5.57637 5.62205 5.66919 5.69733 5.76467 5.81273 5.89738 5.91397 6.04879 6.06683 6.16499 6.21813 6.41371 6.52737 6.65044 6.68765 6.78112 7.05490 7.32164 7.98125 8.00747 8.40858 9.20079 9.92563 10.12674 11.40072 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023038 B = 0.003539 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.097946 B = 7909.175965 C = 8555.218846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.073 4.073 3 C -0.213 4.213 4 C 0.026 3.974 5 N -0.541 5.541 6 H 0.416 0.584 7 C -0.061 4.061 8 C 0.591 3.409 9 O -0.526 6.526 10 N -0.712 5.712 11 C 0.117 3.883 12 H 0.104 0.896 13 C -0.141 4.141 14 C -0.119 4.119 15 H 0.084 0.916 16 C 0.167 3.833 17 N -0.756 5.756 18 C -0.244 4.244 19 H 0.090 0.910 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.885 3.115 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.278 1.278 26 C -0.136 4.136 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.143 0.857 31 H 0.171 0.829 32 H 0.393 0.607 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.029 0.971 36 H 0.027 0.973 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.099 0.901 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.345 21.693 13.223 26.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.238 4.238 4 C -0.110 4.110 5 N -0.137 5.137 6 H 0.254 0.746 7 C -0.174 4.174 8 C 0.379 3.621 9 O -0.402 6.402 10 N -0.362 5.362 11 C 0.012 3.988 12 H 0.122 0.878 13 C -0.179 4.179 14 C -0.138 4.138 15 H 0.102 0.898 16 C 0.040 3.960 17 N -0.401 5.401 18 C -0.374 4.374 19 H 0.108 0.892 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.715 3.285 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.174 4.174 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.161 0.839 31 H 0.188 0.812 32 H 0.227 0.773 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.192 0.808 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.057 21.087 13.205 26.153 hybrid contribution 1.357 0.982 -0.905 1.903 sum -6.700 22.069 12.300 26.139 Atomic orbital electron populations 1.20354 0.89265 1.02981 1.02198 1.19976 0.95950 0.90762 1.01514 1.20818 0.91836 0.98838 1.12294 1.22026 0.99624 0.82940 1.06384 1.41971 1.07192 1.07356 1.57221 0.74642 1.20248 0.83768 0.93547 1.19792 1.17033 0.85912 0.82947 0.76224 1.90810 1.15955 1.83196 1.50251 1.45580 1.09047 1.05956 1.75614 1.21958 0.99385 0.79217 0.98214 0.87819 1.23458 0.97455 1.00421 0.96609 1.22820 0.96479 0.99316 0.95205 0.89795 1.20620 0.95511 0.92194 0.87710 1.42704 1.72139 1.07283 1.17981 1.19083 1.30551 0.87332 1.00405 0.89230 1.24680 1.00750 0.96438 0.97392 1.69702 1.45163 1.24822 1.18617 0.86533 0.77758 0.84334 0.79827 1.21175 1.21683 1.20408 1.23307 0.97759 0.99458 0.96910 0.91536 0.92006 0.90080 0.83944 0.81160 0.77304 0.91486 0.88665 0.95297 0.95509 0.80778 0.93058 0.88302 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 9.83 36.01 0.35 -0.59 16 2 C -0.07 -0.81 6.21 -104.16 -0.65 -1.46 16 3 C -0.21 -1.88 10.76 -39.98 -0.43 -2.31 16 4 C 0.03 0.19 11.89 -16.91 -0.20 -0.01 16 5 N -0.54 -4.24 5.99 -9.39 -0.06 -4.30 16 6 H 0.42 2.13 8.19 -40.82 -0.33 1.79 16 7 C -0.06 -0.68 7.06 -81.98 -0.58 -1.26 16 8 C 0.59 7.57 7.79 -12.86 -0.10 7.47 16 9 O -0.53 -8.33 14.40 5.19 0.07 -8.26 16 10 N -0.71 -7.67 5.26 -54.32 -0.29 -7.96 16 11 C 0.12 1.38 4.32 -67.12 -0.29 1.09 16 12 H 0.10 1.31 7.46 -51.93 -0.39 0.92 16 13 C -0.14 -1.94 7.43 -25.92 -0.19 -2.13 16 14 C -0.12 -1.68 3.63 -89.81 -0.33 -2.00 16 15 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 16 C 0.17 3.11 6.10 -4.04 -0.02 3.09 16 17 N -0.76 -17.90 5.41 -59.90 -0.32 -18.22 16 18 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 19 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 20 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 21 N -0.93 -29.58 13.97 55.49 0.78 -28.80 16 22 Si 0.89 22.20 27.74 -169.99 -4.71 17.48 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 26 C -0.14 -1.49 7.39 -25.91 -0.19 -1.68 16 27 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 1.00 6.49 -51.93 -0.34 0.66 16 30 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 31 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.39 3.28 7.83 -40.82 -0.32 2.96 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.34 7.90 -51.93 -0.41 0.93 16 35 H 0.03 0.55 7.84 -51.93 -0.41 0.15 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.36 8.32 5.53 -40.82 -0.23 8.09 16 38 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 39 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 332.55 15.07 5.01 5.01 Total: -1.00 -35.00 332.55 -8.22 -43.21 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.82 Total: 8.75 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.88 Total: -6.92 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: 0.11 Total: -59.28 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.07 Total: -8.26 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.00 -8.22 -43.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700635885.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.969 kcal (2) G-P(sol) polarization free energy of solvation -34.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds