Wall clock time and date at job start Mon Mar 30 2020 02:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39827 * 126.45531 * 2 1 4 4 C 1.35457 * 107.86245 * 180.26694 * 3 2 1 5 5 N 1.35533 * 108.87137 * 359.73401 * 4 3 2 6 6 H 0.97000 * 125.67456 * 179.97438 * 5 4 3 7 7 C 1.37651 * 108.64328 * 0.02562 * 5 4 3 8 8 C 1.46680 * 126.22976 * 179.97438 * 7 5 4 9 9 O 1.21694 * 119.99683 * 180.02562 * 8 7 5 10 10 N 1.34766 * 120.00116 * 0.02562 * 8 7 5 11 11 C 1.46503 * 120.00036 * 180.02562 * 10 8 7 12 12 H 1.09004 * 112.84870 * 336.19043 * 11 10 8 13 13 C 1.53777 * 113.61688 * 107.50136 * 11 10 8 14 14 C 1.53780 * 87.08176 * 89.11652 * 13 11 10 15 15 H 1.08998 * 113.69026 * 270.87147 * 14 13 11 16 16 C 1.52998 * 113.61304 * 139.98143 * 14 13 11 17 17 N 1.46506 * 109.47233 * 87.50509 * 16 14 13 18 18 C 1.36931 * 119.99939 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00644 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99715 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99673 * 179.72262 * 20 18 17 22 22 Si 1.86795 * 120.00115 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47274 * 89.99913 * 22 20 18 24 24 H 1.48505 * 109.47015 * 209.99478 * 22 20 18 25 25 H 1.48498 * 109.47362 * 329.99904 * 22 20 18 26 26 C 1.53783 * 87.08298 * 25.43378 * 14 13 11 27 27 H 1.09009 * 109.47186 * 270.18182 * 1 2 3 28 28 H 1.08992 * 109.47405 * 30.18529 * 1 2 3 29 29 H 1.09000 * 109.47202 * 150.18772 * 1 2 3 30 30 H 1.08003 * 126.07294 * 0.02562 * 3 2 1 31 31 H 1.07999 * 125.56230 * 179.71909 * 4 3 2 32 32 H 0.97002 * 120.00657 * 0.02562 * 10 8 7 33 33 H 1.09004 * 113.61324 * 334.56685 * 13 11 10 34 34 H 1.09003 * 113.61267 * 203.66403 * 13 11 10 35 35 H 1.09001 * 109.47671 * 327.50434 * 16 14 13 36 36 H 1.09006 * 109.47297 * 207.50154 * 16 14 13 37 37 H 0.97000 * 119.99307 * 359.97438 * 17 16 14 38 38 H 0.97000 * 120.00043 * 180.02562 * 21 20 18 39 39 H 1.08997 * 113.61509 * 89.11418 * 26 14 13 40 40 H 1.08997 * 113.61297 * 220.02015 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 -0.0060 5 7 3.6283 -0.6625 -0.0038 6 1 4.4190 -1.2244 -0.0074 7 6 2.3262 -1.1089 0.0031 8 6 1.8899 -2.5093 0.0070 9 8 0.7027 -2.7766 0.0127 10 7 2.8036 -3.4999 0.0042 11 6 2.3678 -4.8985 0.0074 12 1 1.3662 -5.0288 0.4173 13 6 2.5834 -5.6142 -1.3365 14 6 3.9817 -5.9931 -0.8207 15 1 4.7483 -5.2527 -1.0492 16 6 4.4042 -7.4176 -1.1856 17 7 5.0455 -7.4146 -2.5029 18 6 5.5094 -8.5851 -3.0412 19 1 5.4031 -9.5104 -2.4946 20 6 6.1165 -8.5822 -4.2895 21 7 6.5673 -9.7064 -4.8046 22 14 6.3011 -6.9816 -5.2347 23 1 7.5942 -6.3434 -4.8797 24 1 6.2712 -7.2616 -6.6928 25 1 5.1849 -6.0675 -4.8831 26 6 3.4062 -5.8660 0.5997 27 1 -0.3634 0.0033 1.0277 28 1 -0.3634 0.8882 -0.5167 29 1 -0.3633 -0.8917 -0.5109 30 1 2.0136 2.1549 0.0004 31 1 4.4971 1.3252 -0.0118 32 1 3.7500 -3.2869 0.0000 33 1 2.6017 -4.9395 -2.1924 34 1 1.9260 -6.4708 -1.4854 35 1 3.5255 -8.0621 -1.2108 36 1 5.1070 -7.7904 -0.4403 37 1 5.1413 -6.5834 -2.9936 38 1 6.9919 -9.7045 -5.6767 39 1 2.9738 -6.7914 0.9800 40 1 4.0888 -5.3946 1.3067 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700635885.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:29 Heat of formation + Delta-G solvation = 12.655759 kcal Electronic energy + Delta-G solvation = -20858.138960 eV Core-core repulsion = 17673.362164 eV Total energy + Delta-G solvation = -3184.776796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.32939 -40.95014 -39.23816 -36.52552 -34.68967 -33.46696 -33.10836 -30.67727 -28.90807 -27.78124 -26.67276 -25.10065 -23.64991 -22.88969 -21.72160 -20.61737 -20.09991 -19.60001 -19.46324 -17.16685 -16.73310 -16.63691 -16.36215 -16.03293 -15.64517 -15.20267 -14.93580 -14.81213 -14.60430 -14.39683 -14.08479 -13.76125 -13.59872 -13.52716 -13.39819 -13.18145 -13.02886 -12.75490 -12.55345 -12.20427 -11.90021 -11.75151 -11.45635 -11.22714 -11.07182 -10.91829 -10.18088 -9.70599 -9.30002 -9.12631 -8.05021 -5.38081 0.43837 1.34396 1.38712 1.46253 1.82341 2.00231 2.25002 2.30431 2.46113 3.25718 3.43995 3.53411 3.82497 3.85226 3.91953 4.07762 4.24143 4.26056 4.38297 4.49430 4.69254 4.82054 4.82802 4.86271 4.87154 4.89246 4.95391 4.99948 5.09056 5.16766 5.21568 5.29304 5.44635 5.60217 5.74404 5.77055 5.97436 6.19569 6.43792 6.60897 7.06470 7.11414 7.83580 8.02363 9.16866 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023038 B = 0.003539 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.097946 B = 7909.175965 C = 8555.218846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.094 4.094 3 C -0.232 4.232 4 C 0.049 3.951 5 N -0.531 5.531 6 H 0.430 0.570 7 C -0.090 4.090 8 C 0.587 3.413 9 O -0.567 6.567 10 N -0.701 5.701 11 C 0.125 3.875 12 H 0.095 0.905 13 C -0.146 4.146 14 C -0.114 4.114 15 H 0.095 0.905 16 C 0.162 3.838 17 N -0.758 5.758 18 C -0.236 4.236 19 H 0.055 0.945 20 C -0.067 4.067 21 N -0.985 5.985 22 Si 0.958 3.042 23 H -0.274 1.274 24 H -0.297 1.297 25 H -0.255 1.255 26 C -0.116 4.116 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.160 0.840 31 H 0.213 0.787 32 H 0.407 0.593 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.023 0.977 36 H 0.028 0.972 37 H 0.365 0.635 38 H 0.258 0.742 39 H 0.106 0.894 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.311 24.892 14.098 29.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.255 4.255 4 C -0.088 4.088 5 N -0.128 5.128 6 H 0.269 0.731 7 C -0.203 4.203 8 C 0.377 3.623 9 O -0.447 6.447 10 N -0.351 5.351 11 C 0.020 3.980 12 H 0.114 0.886 13 C -0.184 4.184 14 C -0.133 4.133 15 H 0.113 0.887 16 C 0.036 3.964 17 N -0.404 5.404 18 C -0.367 4.367 19 H 0.073 0.927 20 C -0.258 4.258 21 N -0.636 5.636 22 Si 0.785 3.215 23 H -0.200 1.200 24 H -0.224 1.224 25 H -0.179 1.179 26 C -0.154 4.154 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.177 0.823 31 H 0.229 0.771 32 H 0.244 0.756 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.041 0.959 36 H 0.046 0.954 37 H 0.198 0.802 38 H 0.067 0.933 39 H 0.124 0.876 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.005 24.301 14.129 28.970 hybrid contribution 1.021 -0.043 -1.110 1.509 sum -5.984 24.257 13.019 28.173 Atomic orbital electron populations 1.20307 0.89718 1.02486 1.02099 1.20291 0.96279 0.91964 1.01833 1.21118 0.92287 0.99114 1.13022 1.22707 1.00431 0.82705 1.02976 1.41974 1.06517 1.07955 1.56332 0.73056 1.20030 0.85367 0.92603 1.22286 1.17332 0.85548 0.83928 0.75511 1.90786 1.17647 1.83918 1.52300 1.45445 1.09615 1.05178 1.74895 1.21787 0.99524 0.79831 0.96871 0.88643 1.23473 0.97356 1.00316 0.97292 1.22764 0.96610 0.96329 0.97565 0.88657 1.20820 0.94762 0.95429 0.85379 1.42730 1.72182 1.05796 1.19663 1.19081 1.29586 0.87909 1.00152 0.92678 1.25553 1.01143 1.00367 0.98732 1.69893 1.46900 1.27657 1.19171 0.85356 0.78757 0.79904 0.77439 1.19961 1.22350 1.17943 1.23228 0.97182 0.99596 0.95432 0.91492 0.90374 0.92580 0.82260 0.77079 0.75648 0.92641 0.89409 0.95895 0.95443 0.80178 0.93309 0.87564 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.86 9.83 71.24 0.70 -1.16 16 2 C -0.09 -1.99 6.21 -19.57 -0.12 -2.11 16 3 C -0.23 -3.46 10.76 22.01 0.24 -3.22 16 4 C 0.05 0.51 11.89 83.48 0.99 1.50 16 5 N -0.53 -6.66 5.99 -183.62 -1.10 -7.76 16 6 H 0.43 2.82 8.19 -92.71 -0.76 2.06 16 7 C -0.09 -1.89 7.06 40.35 0.28 -1.60 16 8 C 0.59 14.64 7.79 86.45 0.67 15.31 16 9 O -0.57 -18.33 14.40 -4.33 -0.06 -18.39 16 10 N -0.70 -13.80 5.26 -443.99 -2.33 -16.13 16 11 C 0.13 2.75 4.32 45.52 0.20 2.95 16 12 H 0.10 2.33 7.46 -2.39 -0.02 2.31 16 13 C -0.15 -3.84 7.43 31.12 0.23 -3.61 16 14 C -0.11 -2.94 3.63 -10.27 -0.04 -2.98 16 15 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 16 C 0.16 5.86 6.10 86.38 0.53 6.39 16 17 N -0.76 -35.13 5.41 -343.44 -1.86 -36.99 16 18 C -0.24 -13.61 10.47 84.04 0.88 -12.73 16 19 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 20 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 21 N -0.99 -63.74 13.97 21.65 0.30 -63.44 16 22 Si 0.96 45.49 27.74 68.60 1.90 47.39 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 25 H -0.25 -10.97 6.52 99.48 0.65 -10.32 16 26 C -0.12 -2.22 7.39 31.12 0.23 -1.99 16 27 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.45 6.49 -2.39 -0.02 1.43 16 30 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 31 H 0.21 0.37 8.06 -2.91 -0.02 0.34 16 32 H 0.41 5.59 7.83 -92.71 -0.73 4.87 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 2.43 7.90 -2.39 -0.02 2.41 16 35 H 0.02 0.87 7.84 -2.39 -0.02 0.85 16 36 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.37 16.06 5.53 -92.71 -0.51 15.55 16 38 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 39 H 0.11 1.94 8.10 -2.39 -0.02 1.92 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -78.11 332.55 1.13 -76.99 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -0.98 Total: 25.08 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 5.26 Total: -6.74 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -4.99 Total: -124.33 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.06 Total: -18.39 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.90 Total: 47.39 kcal Total: -78.11 1.13 -76.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700635885.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.641 kcal (2) G-P(sol) polarization free energy of solvation -78.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds