Wall clock time and date at job start Mon Mar 30 2020 01:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38404 * 120.85756 * 2 1 4 4 C 1.38303 * 119.30550 * 180.02562 * 3 2 1 5 5 N 1.31955 * 121.08306 * 0.02562 * 4 3 2 6 6 C 1.31661 * 121.87638 * 359.71430 * 5 4 3 7 7 C 1.39562 * 120.56961 * 0.55011 * 6 5 4 8 8 C 1.47841 * 120.56451 * 179.74924 * 7 6 5 9 9 O 1.21549 * 120.00149 * 225.92664 * 8 7 6 10 10 N 1.34776 * 119.99507 * 45.92478 * 8 7 6 11 11 C 1.46493 * 120.00522 * 5.29750 * 10 8 7 12 12 C 1.46503 * 119.99662 * 185.30155 * 10 8 7 13 13 C 1.53007 * 109.46729 * 269.99982 * 12 10 8 14 14 H 1.09002 * 109.47408 * 64.99873 * 13 12 10 15 15 C 1.53002 * 109.46898 * 184.99925 * 13 12 10 16 16 N 1.46502 * 109.47001 * 304.99611 * 13 12 10 17 17 C 1.36944 * 119.99593 * 155.00024 * 16 13 12 18 18 H 1.07999 * 119.99856 * 0.02562 * 17 16 13 19 19 C 1.38812 * 119.99589 * 180.02562 * 17 16 13 20 20 N 1.31623 * 120.00206 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99774 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47167 * 59.99900 * 21 19 17 23 23 H 1.48499 * 109.47074 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47350 * 300.00052 * 21 19 17 25 25 H 1.09005 * 109.47154 * 264.52891 * 1 2 3 26 26 H 1.09005 * 109.47049 * 24.52199 * 1 2 3 27 27 H 1.08998 * 109.47528 * 144.52331 * 1 2 3 28 28 H 1.08007 * 120.34486 * 359.97438 * 3 2 1 29 29 H 1.08008 * 119.45771 * 179.97438 * 4 3 2 30 30 H 1.08007 * 119.71521 * 180.26888 * 6 5 4 31 31 H 1.09002 * 109.47407 * 275.36530 * 11 10 8 32 32 H 1.09000 * 109.47214 * 35.37118 * 11 10 8 33 33 H 1.09006 * 109.47354 * 155.37223 * 11 10 8 34 34 H 1.08998 * 109.47205 * 29.99257 * 12 10 8 35 35 H 1.08998 * 109.47716 * 150.00169 * 12 10 8 36 36 H 1.09006 * 109.46864 * 179.97438 * 15 13 12 37 37 H 1.08996 * 109.47260 * 299.99660 * 15 13 12 38 38 H 1.09002 * 109.47133 * 59.99780 * 15 13 12 39 39 H 0.96993 * 119.99844 * 335.00279 * 16 13 12 40 40 H 0.96999 * 119.99972 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1881 0.0000 4 6 3.5994 1.1507 -0.0005 5 7 4.2498 0.0025 -0.0016 6 6 3.6197 -1.1535 0.0035 7 6 2.2249 -1.2017 -0.0014 8 6 1.5175 -2.4999 -0.0013 9 8 0.5865 -2.6847 -0.7606 10 7 1.9051 -3.4783 0.8406 11 6 2.9492 -3.2184 1.8348 12 6 1.2823 -4.8020 0.7615 13 6 0.0600 -4.8463 1.6808 14 1 -0.6949 -4.1500 1.3154 15 6 -0.5169 -6.2633 1.6943 16 7 0.4568 -4.4677 3.0393 17 6 -0.4682 -3.9416 3.9012 18 1 -1.4903 -3.8062 3.5796 19 6 -0.0921 -3.5824 5.1882 20 7 1.1537 -3.7470 5.5800 21 14 -1.3540 -2.8655 6.3642 22 1 -2.4505 -3.8452 6.5711 23 1 -0.7042 -2.5668 7.6656 24 1 -1.9103 -1.6139 5.7905 25 1 -0.3634 -0.0980 1.0230 26 1 -0.3633 0.9350 -0.4265 27 1 -0.3634 -0.8368 -0.5964 28 1 1.6966 2.1346 -0.0004 29 1 4.1558 2.0764 -0.0010 30 1 4.1871 -2.0725 0.0068 31 1 3.9289 -3.3589 1.3781 32 1 2.8601 -2.1938 2.1958 33 1 2.8354 -3.9092 2.6703 34 1 0.9719 -4.9968 -0.2651 35 1 1.9998 -5.5606 1.0743 36 1 -1.3874 -6.2949 2.3496 37 1 -0.8122 -6.5450 0.6836 38 1 0.2380 -6.9595 2.0596 39 1 1.3747 -4.5896 3.3281 40 1 1.4164 -3.4963 6.4794 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700743530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:57 Heat of formation + Delta-G solvation = -3.771664 kcal Electronic energy + Delta-G solvation = -22179.428239 eV Core-core repulsion = 18993.939097 eV Total energy + Delta-G solvation = -3185.489142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.84193 -40.17172 -37.94002 -35.95001 -34.83210 -34.06119 -32.39118 -30.67102 -29.06791 -28.21380 -27.17091 -25.77826 -24.69053 -23.27258 -21.86034 -20.60904 -19.29033 -18.44366 -17.78681 -17.33719 -17.22112 -16.58831 -16.16162 -15.79036 -15.42748 -15.28036 -14.94962 -14.78402 -14.16128 -13.90340 -13.86600 -13.72272 -13.65913 -13.45051 -13.10944 -13.08409 -12.83624 -12.78826 -12.72019 -12.49695 -12.23218 -11.88420 -11.62153 -11.21291 -10.95580 -10.51902 -10.42045 -10.14197 -9.61251 -8.94836 -7.92819 -5.17909 -0.23330 0.17914 1.44947 1.45548 1.51781 1.59920 2.06405 2.55591 2.77095 3.32516 3.41153 3.51806 3.67682 3.78028 3.88130 4.04501 4.11477 4.23963 4.38202 4.42519 4.49746 4.58613 4.61997 4.67380 4.68954 4.75059 4.83850 4.87427 4.95126 5.10367 5.13411 5.25806 5.30558 5.37814 5.51882 5.62442 5.65828 6.28815 6.35843 6.86063 7.07033 7.37677 8.11382 8.39159 9.29486 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015521 B = 0.006137 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.619165 B = 4561.449648 C = 5270.500728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.009 4.009 3 C -0.174 4.174 4 C 0.117 3.883 5 N -0.507 5.507 6 C 0.135 3.865 7 C -0.200 4.200 8 C 0.562 3.438 9 O -0.569 6.569 10 N -0.589 5.589 11 C 0.090 3.910 12 C 0.116 3.884 13 C 0.152 3.848 14 H 0.023 0.977 15 C -0.152 4.152 16 N -0.724 5.724 17 C -0.233 4.233 18 H 0.060 0.940 19 C -0.065 4.065 20 N -0.959 5.959 21 Si 0.959 3.041 22 H -0.283 1.283 23 H -0.293 1.293 24 H -0.286 1.286 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.173 0.827 29 H 0.196 0.804 30 H 0.173 0.827 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.034 0.966 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.377 0.623 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.499 6.520 -12.138 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.018 4.018 3 C -0.193 4.193 4 C -0.039 4.039 5 N -0.217 5.217 6 C -0.023 4.023 7 C -0.205 4.205 8 C 0.351 3.649 9 O -0.450 6.450 10 N -0.318 5.318 11 C -0.052 4.052 12 C -0.007 4.007 13 C 0.042 3.958 14 H 0.041 0.959 15 C -0.212 4.212 16 N -0.367 5.367 17 C -0.365 4.365 18 H 0.078 0.922 19 C -0.258 4.258 20 N -0.610 5.610 21 Si 0.789 3.211 22 H -0.209 1.209 23 H -0.219 1.219 24 H -0.212 1.212 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.092 0.908 28 H 0.190 0.810 29 H 0.213 0.787 30 H 0.190 0.810 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.212 0.788 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.786 6.471 -12.449 15.177 hybrid contribution -1.514 0.131 1.258 1.973 sum 4.272 6.602 -11.191 13.677 Atomic orbital electron populations 1.21030 0.89878 1.04998 1.02782 1.20651 0.97497 0.92283 0.91334 1.22364 0.95785 0.98779 1.02419 1.23556 0.92066 0.97064 0.91205 1.67770 1.41105 0.98774 1.14014 1.23185 0.89642 0.97462 0.92013 1.20856 0.96288 0.93906 1.09486 1.18383 0.82574 0.83910 0.80051 1.90668 1.29813 1.81582 1.42935 1.47636 1.38893 1.11792 1.33512 1.21923 0.89941 1.01997 0.91368 1.21863 0.95258 0.83154 1.00464 1.20786 0.95101 0.94623 0.85246 0.95912 1.22212 1.00623 0.97496 1.00891 1.42515 1.09789 1.75284 1.09114 1.19389 0.91767 1.32109 0.93284 0.92217 1.25284 0.97938 1.03645 0.98900 1.69736 1.16941 1.55643 1.18680 0.85435 0.78744 0.78329 0.78593 1.20911 1.21931 1.21246 0.91729 0.88032 0.90825 0.80972 0.78708 0.80962 0.89564 0.93063 0.91037 0.89109 0.88350 0.94639 0.91326 0.92583 0.78770 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 9.59 71.24 0.68 -3.00 16 2 C -0.01 -0.26 5.95 -19.40 -0.12 -0.38 16 3 C -0.17 -3.64 9.78 22.32 0.22 -3.42 16 4 C 0.12 2.36 11.17 84.69 0.95 3.31 16 5 N -0.51 -12.86 10.35 -194.75 -2.01 -14.88 16 6 C 0.13 3.61 9.23 85.04 0.79 4.39 16 7 C -0.20 -6.20 4.83 -19.99 -0.10 -6.30 16 8 C 0.56 20.01 6.85 86.79 0.59 20.60 16 9 O -0.57 -23.01 14.43 -3.87 -0.06 -23.07 16 10 N -0.59 -19.78 2.73 -850.19 -2.32 -22.10 16 11 C 0.09 2.82 8.57 127.77 1.09 3.92 16 12 C 0.12 3.77 4.99 86.38 0.43 4.20 16 13 C 0.15 6.08 3.20 44.99 0.14 6.22 16 14 H 0.02 1.04 8.08 -2.39 -0.02 1.02 16 15 C -0.15 -5.30 9.49 71.98 0.68 -4.61 16 16 N -0.72 -34.90 4.57 -322.91 -1.47 -36.37 16 17 C -0.23 -12.83 9.93 84.03 0.83 -11.99 16 18 H 0.06 3.31 7.83 -2.91 -0.02 3.28 16 19 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 20 N -0.96 -55.92 13.06 21.65 0.28 -55.64 16 21 Si 0.96 46.03 29.55 68.60 2.03 48.06 16 22 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 23 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 25 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 26 H 0.10 2.10 8.07 -2.38 -0.02 2.08 16 27 H 0.07 2.46 5.77 -2.39 -0.01 2.44 16 28 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 29 H 0.20 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.17 3.94 6.35 -2.91 -0.02 3.92 16 31 H 0.09 2.00 6.78 -2.39 -0.02 1.98 16 32 H 0.05 1.76 6.86 -2.39 -0.02 1.74 16 33 H 0.07 2.56 5.77 -2.38 -0.01 2.55 16 34 H 0.09 2.81 7.50 -2.39 -0.02 2.79 16 35 H 0.10 2.75 8.07 -2.39 -0.02 2.73 16 36 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.38 18.67 5.40 -92.71 -0.50 18.17 16 40 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -68.59 328.56 3.66 -64.93 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.55 Total: 29.30 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 6.67 Total: 9.78 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -5.53 Total: -129.00 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.06 Total: -23.07 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -68.59 3.66 -64.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700743530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.156 kcal (2) G-P(sol) polarization free energy of solvation -68.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds