Wall clock time and date at job start Mon Mar 30 2020 01:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38392 * 120.85764 * 2 1 4 4 C 1.38307 * 119.30583 * 180.02562 * 3 2 1 5 5 N 1.31951 * 121.08332 * 359.97438 * 4 3 2 6 6 C 1.31671 * 121.87919 * 0.02562 * 5 4 3 7 7 C 1.39563 * 120.56383 * 0.26877 * 6 5 4 8 8 C 1.47840 * 120.56041 * 179.70561 * 7 6 5 9 9 O 1.21546 * 120.00042 * 125.96137 * 8 7 6 10 10 N 1.34779 * 119.99757 * 305.96008 * 8 7 6 11 11 C 1.46492 * 120.00078 * 4.52500 * 10 8 7 12 12 C 1.46500 * 119.99902 * 184.52273 * 10 8 7 13 13 C 1.53006 * 109.47023 * 89.99963 * 12 10 8 14 14 H 1.08998 * 109.47212 * 295.00148 * 13 12 10 15 15 C 1.53000 * 109.46886 * 175.00048 * 13 12 10 16 16 N 1.46502 * 109.46947 * 55.00294 * 13 12 10 17 17 C 1.36931 * 120.00065 * 205.00206 * 16 13 12 18 18 H 1.08002 * 120.00000 * 359.97438 * 17 16 13 19 19 C 1.38813 * 120.00457 * 179.97438 * 17 16 13 20 20 N 1.31618 * 120.00530 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99668 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47257 * 89.99602 * 21 19 17 23 23 H 1.48500 * 109.47102 * 210.00186 * 21 19 17 24 24 H 1.48508 * 109.46900 * 329.99796 * 21 19 17 25 25 H 1.09003 * 109.47173 * 85.16810 * 1 2 3 26 26 H 1.09001 * 109.47273 * 205.17337 * 1 2 3 27 27 H 1.09004 * 109.47021 * 325.17345 * 1 2 3 28 28 H 1.08004 * 120.35136 * 0.04401 * 3 2 1 29 29 H 1.08002 * 119.45983 * 180.02562 * 4 3 2 30 30 H 1.07997 * 119.71826 * 180.02562 * 6 5 4 31 31 H 1.09004 * 109.47590 * 84.40370 * 11 10 8 32 32 H 1.09008 * 109.47328 * 204.40086 * 11 10 8 33 33 H 1.09004 * 109.47680 * 324.39956 * 11 10 8 34 34 H 1.08996 * 109.47641 * 209.99931 * 12 10 8 35 35 H 1.09000 * 109.46862 * 330.00474 * 12 10 8 36 36 H 1.09004 * 109.47134 * 60.00439 * 15 13 12 37 37 H 1.09006 * 109.46508 * 180.02562 * 15 13 12 38 38 H 1.08998 * 109.47277 * 300.00061 * 15 13 12 39 39 H 0.96997 * 119.99830 * 24.99738 * 16 13 12 40 40 H 0.96993 * 120.00094 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1880 0.0000 4 6 3.5994 1.1506 -0.0005 5 7 4.2498 0.0025 -0.0005 6 6 3.6197 -1.1537 -0.0005 7 6 2.2249 -1.2018 -0.0062 8 6 1.5175 -2.5000 -0.0127 9 8 0.6806 -2.7403 0.8353 10 7 1.8007 -3.4169 -0.9591 11 6 2.8776 -3.1686 -1.9206 12 6 1.0316 -4.6619 -1.0261 13 6 -0.1783 -4.4653 -1.9418 14 1 -0.8534 -3.7327 -1.4996 15 6 -0.9114 -5.7975 -2.1112 16 7 0.2727 -3.9862 -3.2507 17 6 -0.5779 -3.2665 -4.0467 18 1 -1.5814 -3.0524 -3.7097 19 6 -0.1505 -2.8120 -5.2867 20 7 -0.9682 -2.1207 -6.0520 21 14 1.5855 -3.1816 -5.8692 22 1 1.5947 -4.4663 -6.6139 23 1 2.0515 -2.0892 -6.7607 24 1 2.4902 -3.2829 -4.6960 25 1 -0.3634 0.0866 -1.0240 26 1 -0.3634 -0.9301 0.4371 27 1 -0.3633 0.8436 0.5869 28 1 1.6967 2.1345 0.0007 29 1 4.1558 2.0762 -0.0001 30 1 4.1871 -2.0726 -0.0001 31 1 3.8310 -3.4651 -1.4832 32 1 2.6973 -3.7484 -2.8259 33 1 2.9061 -2.1074 -2.1684 34 1 1.6620 -5.4576 -1.4229 35 1 0.6907 -4.9326 -0.0268 36 1 -1.2470 -6.1540 -1.1373 37 1 -1.7731 -5.6575 -2.7640 38 1 -0.2363 -6.5301 -2.5535 39 1 1.1739 -4.1787 -3.5535 40 1 -0.6694 -1.8028 -6.9183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700743531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:00 Heat of formation + Delta-G solvation = 20.444787 kcal Electronic energy + Delta-G solvation = -22344.307098 eV Core-core repulsion = 19159.868060 eV Total energy + Delta-G solvation = -3184.439038 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.76806 -39.05096 -36.57892 -34.49912 -33.81825 -32.27072 -31.32161 -29.54606 -27.99364 -27.04620 -25.98758 -23.99516 -23.17934 -22.22823 -20.39063 -19.45020 -17.69961 -17.33053 -16.74754 -16.38648 -15.97675 -15.14520 -14.79348 -14.40937 -14.20618 -13.83916 -13.78951 -13.25003 -12.97632 -12.78154 -12.67861 -12.58455 -12.37212 -12.30964 -11.86448 -11.76367 -11.66011 -11.47327 -10.96533 -10.72464 -10.61568 -10.14894 -10.03966 -9.60646 -9.48399 -9.37943 -9.13641 -9.00156 -8.38329 -7.30042 -5.80418 -3.15476 0.79763 1.17167 2.75165 3.17603 3.24537 3.31707 3.39264 3.73668 4.28270 4.52359 4.53656 4.68306 4.70629 5.01694 5.15842 5.27720 5.36840 5.39473 5.47823 5.50575 5.55652 5.65751 5.65954 5.78448 5.84683 5.95498 6.01840 6.12355 6.13837 6.18598 6.34611 6.42941 6.56502 6.63444 6.74740 7.00695 7.50465 7.81481 7.96199 8.27709 8.37908 9.16167 9.88290 10.08137 11.38153 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015392 B = 0.006872 C = 0.005960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.653965 B = 4073.357687 C = 4697.013834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.014 3.986 3 C -0.179 4.179 4 C 0.112 3.888 5 N -0.493 5.493 6 C 0.132 3.868 7 C -0.176 4.176 8 C 0.570 3.430 9 O -0.536 6.536 10 N -0.589 5.589 11 C 0.075 3.925 12 C 0.106 3.894 13 C 0.160 3.840 14 H 0.059 0.941 15 C -0.162 4.162 16 N -0.744 5.744 17 C -0.236 4.236 18 H 0.089 0.911 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.879 3.121 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.274 1.274 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.140 0.860 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.042 0.958 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.357 0.643 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.809 1.679 12.302 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.006 3.994 3 C -0.199 4.199 4 C -0.043 4.043 5 N -0.202 5.202 6 C -0.027 4.027 7 C -0.181 4.181 8 C 0.357 3.643 9 O -0.414 6.414 10 N -0.320 5.320 11 C -0.068 4.068 12 C -0.017 4.017 13 C 0.050 3.950 14 H 0.077 0.923 15 C -0.223 4.223 16 N -0.389 5.389 17 C -0.366 4.366 18 H 0.107 0.893 19 C -0.192 4.192 20 N -0.582 5.582 21 Si 0.710 3.290 22 H -0.212 1.212 23 H -0.219 1.219 24 H -0.201 1.201 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.158 0.842 29 H 0.175 0.825 30 H 0.175 0.825 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.191 0.809 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.083 1.680 12.637 15.653 hybrid contribution 0.363 -0.134 -0.886 0.967 sum 9.446 1.546 11.751 15.156 Atomic orbital electron populations 1.21112 0.89399 1.04899 1.03915 1.20386 0.97391 0.91309 0.90351 1.22009 0.95547 0.98642 1.03718 1.22867 0.91748 0.96324 0.93401 1.67674 1.40749 0.98272 1.13508 1.22929 0.90169 0.96558 0.93004 1.20849 0.95517 0.94511 1.07222 1.17997 0.82005 0.83101 0.81170 1.90727 1.34022 1.78623 1.38055 1.47539 1.34903 1.19052 1.30485 1.22096 0.88551 1.03070 0.93069 1.21971 0.93915 0.84449 1.01383 1.20628 0.93449 0.94739 0.86172 0.92291 1.22338 1.01353 0.98485 1.00117 1.42801 1.13563 1.65887 1.16627 1.19051 0.95827 1.25024 0.96695 0.89343 1.24649 0.97297 1.00308 0.96946 1.69690 1.34971 1.41872 1.11714 0.86710 0.86107 0.77726 0.78449 1.21221 1.21862 1.20089 0.89465 0.88900 0.90827 0.84191 0.82470 0.82457 0.92883 0.89803 0.91249 0.90720 0.89397 0.93901 0.92030 0.93526 0.80884 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.75 36.01 0.35 -1.61 16 2 C 0.01 0.20 5.95 -103.91 -0.62 -0.42 16 3 C -0.18 -2.13 9.82 -39.50 -0.39 -2.52 16 4 C 0.11 1.31 11.17 -17.47 -0.20 1.11 16 5 N -0.49 -6.67 10.35 -12.91 -0.13 -6.80 16 6 C 0.13 1.79 9.15 -17.13 -0.16 1.64 16 7 C -0.18 -2.69 4.72 -104.82 -0.49 -3.19 16 8 C 0.57 9.66 6.63 -12.33 -0.08 9.58 16 9 O -0.54 -10.24 14.72 5.32 0.08 -10.16 16 10 N -0.59 -9.44 2.73 -182.70 -0.50 -9.93 16 11 C 0.08 1.11 8.70 59.84 0.52 1.63 16 12 C 0.11 1.65 5.06 -4.04 -0.02 1.63 16 13 C 0.16 3.02 3.20 -67.93 -0.22 2.80 16 14 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 15 C -0.16 -2.74 9.49 37.16 0.35 -2.38 16 16 N -0.74 -16.56 4.37 -53.42 -0.23 -16.79 16 17 C -0.24 -6.41 10.41 -15.06 -0.16 -6.57 16 18 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 19 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 20 N -0.93 -28.81 13.97 55.49 0.78 -28.03 16 21 Si 0.88 21.12 27.73 -169.99 -4.71 16.40 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.27 -5.83 5.05 56.52 0.29 -5.54 16 25 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.09 1.52 5.70 -51.93 -0.30 1.23 16 27 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 28 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 29 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.16 1.82 6.82 -52.49 -0.36 1.46 16 31 H 0.05 0.60 7.29 -51.93 -0.38 0.22 16 32 H 0.08 1.34 4.26 -51.92 -0.22 1.12 16 33 H 0.07 1.09 6.49 -51.93 -0.34 0.75 16 34 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 35 H 0.09 1.32 7.36 -51.93 -0.38 0.94 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.36 7.64 3.50 -40.82 -0.14 7.50 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 323.45 15.07 4.87 4.87 Total: -1.00 -32.57 323.45 -6.64 -39.21 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.59 Total: 9.53 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.20 Total: 1.71 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.09 Total: -61.56 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.71 Total: 16.40 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.57 -6.64 -39.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700743531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.650 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds