Wall clock time and date at job start Mon Mar 30 2020 01:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38392 * 120.85764 * 2 1 4 4 C 1.38307 * 119.30583 * 180.02562 * 3 2 1 5 5 N 1.31951 * 121.08332 * 359.97438 * 4 3 2 6 6 C 1.31671 * 121.87919 * 0.02562 * 5 4 3 7 7 C 1.39563 * 120.56383 * 0.26877 * 6 5 4 8 8 C 1.47840 * 120.56041 * 179.70561 * 7 6 5 9 9 O 1.21546 * 120.00042 * 125.96137 * 8 7 6 10 10 N 1.34779 * 119.99757 * 305.96008 * 8 7 6 11 11 C 1.46492 * 120.00078 * 4.52500 * 10 8 7 12 12 C 1.46500 * 119.99902 * 184.52273 * 10 8 7 13 13 C 1.53006 * 109.47023 * 89.99963 * 12 10 8 14 14 H 1.08998 * 109.47212 * 295.00148 * 13 12 10 15 15 C 1.53000 * 109.46886 * 175.00048 * 13 12 10 16 16 N 1.46502 * 109.46947 * 55.00294 * 13 12 10 17 17 C 1.36931 * 120.00065 * 205.00206 * 16 13 12 18 18 H 1.08002 * 120.00000 * 359.97438 * 17 16 13 19 19 C 1.38813 * 120.00457 * 179.97438 * 17 16 13 20 20 N 1.31618 * 120.00530 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99668 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47257 * 89.99602 * 21 19 17 23 23 H 1.48500 * 109.47102 * 210.00186 * 21 19 17 24 24 H 1.48508 * 109.46900 * 329.99796 * 21 19 17 25 25 H 1.09003 * 109.47173 * 85.16810 * 1 2 3 26 26 H 1.09001 * 109.47273 * 205.17337 * 1 2 3 27 27 H 1.09004 * 109.47021 * 325.17345 * 1 2 3 28 28 H 1.08004 * 120.35136 * 0.04401 * 3 2 1 29 29 H 1.08002 * 119.45983 * 180.02562 * 4 3 2 30 30 H 1.07997 * 119.71826 * 180.02562 * 6 5 4 31 31 H 1.09004 * 109.47590 * 84.40370 * 11 10 8 32 32 H 1.09008 * 109.47328 * 204.40086 * 11 10 8 33 33 H 1.09004 * 109.47680 * 324.39956 * 11 10 8 34 34 H 1.08996 * 109.47641 * 209.99931 * 12 10 8 35 35 H 1.09000 * 109.46862 * 330.00474 * 12 10 8 36 36 H 1.09004 * 109.47134 * 60.00439 * 15 13 12 37 37 H 1.09006 * 109.46508 * 180.02562 * 15 13 12 38 38 H 1.08998 * 109.47277 * 300.00061 * 15 13 12 39 39 H 0.96997 * 119.99830 * 24.99738 * 16 13 12 40 40 H 0.96993 * 120.00094 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1880 0.0000 4 6 3.5994 1.1506 -0.0005 5 7 4.2498 0.0025 -0.0005 6 6 3.6197 -1.1537 -0.0005 7 6 2.2249 -1.2018 -0.0062 8 6 1.5175 -2.5000 -0.0127 9 8 0.6806 -2.7403 0.8353 10 7 1.8007 -3.4169 -0.9591 11 6 2.8776 -3.1686 -1.9206 12 6 1.0316 -4.6619 -1.0261 13 6 -0.1783 -4.4653 -1.9418 14 1 -0.8534 -3.7327 -1.4996 15 6 -0.9114 -5.7975 -2.1112 16 7 0.2727 -3.9862 -3.2507 17 6 -0.5779 -3.2665 -4.0467 18 1 -1.5814 -3.0524 -3.7097 19 6 -0.1505 -2.8120 -5.2867 20 7 -0.9682 -2.1207 -6.0520 21 14 1.5855 -3.1816 -5.8692 22 1 1.5947 -4.4663 -6.6139 23 1 2.0515 -2.0892 -6.7607 24 1 2.4902 -3.2829 -4.6960 25 1 -0.3634 0.0866 -1.0240 26 1 -0.3634 -0.9301 0.4371 27 1 -0.3633 0.8436 0.5869 28 1 1.6967 2.1345 0.0007 29 1 4.1558 2.0762 -0.0001 30 1 4.1871 -2.0726 -0.0001 31 1 3.8310 -3.4651 -1.4832 32 1 2.6973 -3.7484 -2.8259 33 1 2.9061 -2.1074 -2.1684 34 1 1.6620 -5.4576 -1.4229 35 1 0.6907 -4.9326 -0.0268 36 1 -1.2470 -6.1540 -1.1373 37 1 -1.7731 -5.6575 -2.7640 38 1 -0.2363 -6.5301 -2.5535 39 1 1.1739 -4.1787 -3.5535 40 1 -0.6694 -1.8028 -6.9183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700743531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:59 Heat of formation + Delta-G solvation = -1.698437 kcal Electronic energy + Delta-G solvation = -22345.267300 eV Core-core repulsion = 19159.868060 eV Total energy + Delta-G solvation = -3185.399240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.87859 -40.22774 -38.09395 -36.00536 -34.88350 -34.12874 -32.50855 -31.31397 -29.10322 -28.28528 -27.22971 -25.57465 -24.65369 -23.29662 -21.93201 -20.78197 -19.66212 -18.52735 -17.86755 -17.34292 -17.28223 -16.69453 -16.31768 -15.75060 -15.53479 -15.20391 -15.03065 -14.74957 -14.32672 -14.18568 -13.90536 -13.85599 -13.71077 -13.48937 -13.29680 -13.25947 -12.84669 -12.79797 -12.75328 -12.42126 -12.22930 -11.79178 -11.72665 -11.25402 -11.01805 -10.55293 -10.45423 -10.14944 -9.71267 -9.26570 -8.00437 -5.33526 -0.21750 0.15663 1.31858 1.40934 1.47423 1.50465 2.01336 2.48955 2.72952 3.28506 3.31933 3.48939 3.56448 3.64433 3.75751 3.99701 4.08370 4.14621 4.29300 4.38376 4.46568 4.53142 4.59274 4.62402 4.65792 4.72690 4.79209 4.82601 4.83939 5.01889 5.07530 5.21976 5.26831 5.33488 5.59604 5.60683 5.78111 6.20609 6.27100 6.83854 7.01604 7.09487 7.82876 8.05594 9.21451 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015392 B = 0.006872 C = 0.005960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.653965 B = 4073.357687 C = 4697.013834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.011 4.011 3 C -0.174 4.174 4 C 0.116 3.884 5 N -0.505 5.505 6 C 0.134 3.866 7 C -0.199 4.199 8 C 0.566 3.434 9 O -0.568 6.568 10 N -0.592 5.592 11 C 0.073 3.927 12 C 0.112 3.888 13 C 0.156 3.844 14 H 0.023 0.977 15 C -0.153 4.153 16 N -0.740 5.740 17 C -0.220 4.220 18 H 0.044 0.956 19 C -0.066 4.066 20 N -0.988 5.988 21 Si 0.947 3.053 22 H -0.282 1.282 23 H -0.303 1.303 24 H -0.230 1.230 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.101 0.899 28 H 0.170 0.830 29 H 0.196 0.804 30 H 0.177 0.823 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.065 0.935 39 H 0.367 0.633 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.107 1.337 13.251 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.019 4.019 3 C -0.193 4.193 4 C -0.039 4.039 5 N -0.214 5.214 6 C -0.024 4.024 7 C -0.204 4.204 8 C 0.354 3.646 9 O -0.448 6.448 10 N -0.322 5.322 11 C -0.070 4.070 12 C -0.011 4.011 13 C 0.047 3.953 14 H 0.041 0.959 15 C -0.214 4.214 16 N -0.386 5.386 17 C -0.351 4.351 18 H 0.062 0.938 19 C -0.257 4.257 20 N -0.639 5.639 21 Si 0.774 3.226 22 H -0.208 1.208 23 H -0.230 1.230 24 H -0.154 1.154 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.119 0.881 28 H 0.187 0.813 29 H 0.212 0.788 30 H 0.194 0.806 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.202 0.798 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.410 1.297 13.634 18.482 hybrid contribution -0.769 0.036 -1.102 1.344 sum 11.641 1.333 12.533 17.157 Atomic orbital electron populations 1.21003 0.90153 1.04678 1.02869 1.20594 0.97272 0.92425 0.91596 1.22333 0.95896 0.98777 1.02337 1.23519 0.91904 0.97131 0.91360 1.67769 1.40997 0.98742 1.13919 1.23161 0.89395 0.97538 0.92280 1.20868 0.96453 0.93832 1.09296 1.18340 0.81619 0.83739 0.80875 1.90698 1.35452 1.79284 1.39416 1.47659 1.35143 1.18977 1.30419 1.22217 0.89842 1.02242 0.92675 1.21933 0.92944 0.85320 1.00883 1.20774 0.94825 0.94628 0.85043 0.95907 1.22195 1.00322 0.97571 1.01271 1.42674 1.13239 1.65438 1.17221 1.18898 0.94734 1.24410 0.97086 0.93789 1.25491 1.02317 1.00732 0.97157 1.69902 1.37692 1.44090 1.12222 0.85601 0.80999 0.76941 0.79022 1.20808 1.23012 1.15355 0.91444 0.91579 0.88060 0.81265 0.78764 0.80613 0.88754 0.90785 0.92446 0.87379 0.88699 0.91071 0.94959 0.91638 0.79800 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 9.75 71.24 0.69 -3.15 16 2 C -0.01 -0.30 5.95 -19.40 -0.12 -0.41 16 3 C -0.17 -3.71 9.82 22.32 0.22 -3.49 16 4 C 0.12 2.32 11.17 84.69 0.95 3.26 16 5 N -0.51 -12.19 10.35 -194.76 -2.01 -14.20 16 6 C 0.13 3.35 9.15 85.04 0.78 4.13 16 7 C -0.20 -5.93 4.72 -19.99 -0.09 -6.02 16 8 C 0.57 18.99 6.63 86.78 0.58 19.56 16 9 O -0.57 -22.10 14.72 -3.86 -0.06 -22.15 16 10 N -0.59 -17.97 2.73 -850.20 -2.32 -20.29 16 11 C 0.07 1.91 8.70 127.77 1.11 3.02 16 12 C 0.11 3.26 5.06 86.38 0.44 3.70 16 13 C 0.16 5.85 3.20 44.99 0.14 5.99 16 14 H 0.02 1.01 8.08 -2.39 -0.02 0.99 16 15 C -0.15 -5.02 9.49 71.98 0.68 -4.33 16 16 N -0.74 -32.60 4.37 -322.93 -1.41 -34.01 16 17 C -0.22 -12.34 10.41 84.03 0.87 -11.46 16 18 H 0.04 2.80 8.06 -2.91 -0.02 2.78 16 19 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 20 N -0.99 -63.22 13.97 21.65 0.30 -62.92 16 21 Si 0.95 43.18 27.73 68.60 1.90 45.08 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 23 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 24 H -0.23 -8.65 5.05 99.48 0.50 -8.14 16 25 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.07 2.29 5.70 -2.39 -0.01 2.28 16 27 H 0.10 2.28 8.13 -2.38 -0.02 2.26 16 28 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 29 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.18 3.51 6.82 -2.91 -0.02 3.49 16 31 H 0.09 1.70 7.29 -2.38 -0.02 1.68 16 32 H 0.07 2.07 4.26 -2.38 -0.01 2.06 16 33 H 0.06 1.66 6.49 -2.39 -0.02 1.64 16 34 H 0.11 2.47 8.07 -2.39 -0.02 2.45 16 35 H 0.09 2.68 7.36 -2.39 -0.02 2.67 16 36 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.37 14.83 3.50 -92.71 -0.32 14.50 16 40 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -74.87 323.45 3.64 -71.23 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.52 Total: 29.83 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 6.72 Total: 7.43 kcal Atomic # 7 Polarization: -125.98 SS G_CDS: -5.44 Total: -131.42 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.06 Total: -22.15 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.90 Total: 45.08 kcal Total: -74.87 3.64 -71.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700743531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.531 kcal (2) G-P(sol) polarization free energy of solvation -74.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds