Wall clock time and date at job start Mon Mar 30 2020 01:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38671 * 120.79228 * 2 1 4 4 C 1.38181 * 119.16318 * 180.02562 * 3 2 1 5 5 N 1.31886 * 120.76668 * 0.02562 * 4 3 2 6 6 C 1.31865 * 121.72347 * 359.68705 * 5 4 3 7 7 C 1.38218 * 120.75925 * 0.58061 * 6 5 4 8 8 C 1.50701 * 120.41710 * 179.73203 * 7 6 5 9 9 C 1.50703 * 109.47355 * 264.72046 * 8 7 6 10 10 O 1.21283 * 119.99488 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00290 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27728 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 H 1.09002 * 109.47682 * 64.99618 * 13 12 11 15 15 C 1.53003 * 109.47530 * 184.99929 * 13 12 11 16 16 N 1.46506 * 109.47012 * 304.99483 * 13 12 11 17 17 C 1.36937 * 119.99934 * 154.99714 * 16 13 12 18 18 H 1.07998 * 120.00035 * 0.02562 * 17 16 13 19 19 C 1.38810 * 120.00229 * 180.02562 * 17 16 13 20 20 N 1.31614 * 120.00215 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99755 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47094 * 89.99844 * 21 19 17 23 23 H 1.48504 * 109.47093 * 210.00291 * 21 19 17 24 24 H 1.48497 * 109.47085 * 329.99855 * 21 19 17 25 25 H 1.09004 * 109.47109 * 269.98435 * 1 2 3 26 26 H 1.09001 * 109.46909 * 29.97556 * 1 2 3 27 27 H 1.08995 * 109.47624 * 149.98096 * 1 2 3 28 28 H 1.07996 * 120.42236 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.61921 * 179.97438 * 4 3 2 30 30 H 1.07999 * 119.61789 * 180.28608 * 6 5 4 31 31 H 1.08998 * 109.47477 * 144.71892 * 8 7 6 32 32 H 1.09002 * 109.47412 * 24.72151 * 8 7 6 33 33 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 35 35 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 36 36 H 1.09000 * 109.46800 * 300.00452 * 15 13 12 37 37 H 1.09002 * 109.46892 * 59.99206 * 15 13 12 38 38 H 1.09001 * 109.47478 * 179.97438 * 15 13 12 39 39 H 0.97000 * 120.00390 * 335.00529 * 16 13 12 40 40 H 0.97001 * 120.00086 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1519 -0.0005 5 7 4.2403 0.0000 -0.0016 6 6 3.5982 -1.1518 0.0040 7 6 2.2166 -1.1909 -0.0008 8 6 1.4907 -2.5116 -0.0005 9 6 1.1392 -2.8921 -1.4157 10 8 1.4474 -2.1623 -2.3341 11 7 0.4815 -4.0427 -1.6606 12 6 0.1452 -4.4154 -3.0369 13 6 -0.5874 -5.7585 -3.0370 14 1 -1.5439 -5.6508 -2.5255 15 6 -0.8283 -6.2081 -4.4795 16 7 0.2274 -6.7592 -2.3434 17 6 -0.3700 -7.8476 -1.7657 18 1 -1.4418 -7.9685 -1.8218 19 6 0.4018 -8.7955 -1.1080 20 7 -0.1723 -9.8419 -0.5532 21 14 2.2555 -8.5860 -1.0103 22 1 2.6030 -7.8174 0.2118 23 1 2.9024 -9.9216 -0.9559 24 1 2.7346 -7.8525 -2.2093 25 1 -0.3633 -0.0003 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5141 28 1 1.6968 2.1377 -0.0004 29 1 4.1584 2.0753 -0.0010 30 1 4.1584 -2.0751 0.0077 31 1 0.5784 -2.4246 0.5896 32 1 2.1322 -3.2787 0.4333 33 1 0.2347 -4.6261 -0.9260 34 1 -0.4975 -3.6509 -3.4736 35 1 1.0595 -4.5002 -3.6242 36 1 -1.4344 -5.4636 -4.9957 37 1 0.1282 -6.3158 -4.9910 38 1 -1.3498 -7.1652 -4.4796 39 1 1.1900 -6.6508 -2.2931 40 1 0.3671 -10.5044 -0.0940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713316332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:28 Heat of formation + Delta-G solvation = -0.855398 kcal Electronic energy + Delta-G solvation = -21157.557237 eV Core-core repulsion = 17972.194554 eV Total energy + Delta-G solvation = -3185.362683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.65430 -39.24669 -36.57919 -34.48450 -33.67817 -32.62230 -31.91192 -29.54772 -28.72308 -27.67059 -25.57455 -23.43580 -22.89370 -21.89264 -20.36388 -19.97789 -17.93045 -16.93241 -16.77715 -16.57536 -16.00128 -15.46215 -14.96285 -14.67656 -14.41426 -13.97440 -13.64802 -13.39306 -13.01943 -12.98605 -12.83411 -12.79060 -12.63841 -12.33074 -12.30501 -11.83560 -11.70161 -11.48007 -11.00013 -10.87103 -10.46040 -10.14407 -9.86439 -9.68724 -9.54872 -9.51002 -9.08633 -9.01585 -8.82183 -7.41375 -5.87209 -3.24479 0.99983 1.16180 2.75443 3.28262 3.33901 3.34947 3.39654 3.78028 4.30181 4.49335 4.51332 4.55508 4.73914 4.82175 5.00680 5.14891 5.19044 5.25868 5.30532 5.34919 5.36254 5.43061 5.48262 5.66481 5.72904 5.81095 5.92920 5.94664 6.04262 6.15270 6.21795 6.34060 6.60724 6.62086 6.66047 6.90323 7.73923 7.87999 7.88806 8.31230 8.38734 9.08971 9.81215 10.00349 11.30706 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021416 B = 0.004184 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.145372 B = 6690.342127 C = 7347.157886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.026 4.026 3 C -0.175 4.175 4 C 0.095 3.905 5 N -0.489 5.489 6 C 0.114 3.886 7 C -0.112 4.112 8 C -0.104 4.104 9 C 0.511 3.489 10 O -0.544 6.544 11 N -0.717 5.717 12 C 0.112 3.888 13 C 0.165 3.835 14 H 0.063 0.937 15 C -0.163 4.163 16 N -0.748 5.748 17 C -0.248 4.248 18 H 0.091 0.909 19 C 0.009 3.991 20 N -0.931 5.931 21 Si 0.881 3.119 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.132 0.868 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.411 0.589 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.362 0.638 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.532 19.886 1.963 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.034 4.034 3 C -0.195 4.195 4 C -0.061 4.061 5 N -0.198 5.198 6 C -0.043 4.043 7 C -0.115 4.115 8 C -0.144 4.144 9 C 0.296 3.704 10 O -0.422 6.422 11 N -0.369 5.369 12 C -0.012 4.012 13 C 0.055 3.945 14 H 0.081 0.919 15 C -0.224 4.224 16 N -0.392 5.392 17 C -0.378 4.378 18 H 0.109 0.891 19 C -0.187 4.187 20 N -0.578 5.578 21 Si 0.711 3.289 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.150 0.850 29 H 0.170 0.830 30 H 0.170 0.830 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.247 0.753 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.195 0.805 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.484 20.219 1.383 20.418 hybrid contribution 0.353 -0.418 0.347 0.648 sum 2.837 19.801 1.730 20.078 Atomic orbital electron populations 1.20855 0.90398 1.03689 1.02597 1.20139 0.96671 0.92435 0.94183 1.21972 0.95622 0.98418 1.03509 1.22695 0.91776 0.96214 0.95444 1.67677 1.41106 0.98440 1.12572 1.22625 0.90941 0.96330 0.94440 1.20186 0.94933 0.94296 1.02048 1.20638 1.02499 0.95546 0.95759 1.20391 0.77951 0.81302 0.90726 1.90704 1.53701 1.51558 1.46197 1.46044 1.58107 1.22249 1.10518 1.21739 0.99995 0.96999 0.82484 1.20482 0.94616 0.86473 0.92885 0.91942 1.22337 1.01026 1.01386 0.97631 1.42854 1.04998 1.25259 1.66119 1.19051 0.94000 0.97812 1.26921 0.89083 1.24660 0.97206 0.96759 1.00121 1.69691 1.34564 1.12573 1.40963 0.86618 0.87294 0.77193 0.77789 1.21000 1.21682 1.20363 0.90410 0.90941 0.90933 0.84963 0.82976 0.82951 0.87574 0.87439 0.75309 0.91461 0.91910 0.93860 0.93330 0.91820 0.80505 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.31 36.00 0.34 -0.73 16 2 C -0.03 -0.29 5.92 -104.32 -0.62 -0.91 16 3 C -0.18 -1.79 9.82 -39.44 -0.39 -2.18 16 4 C 0.10 1.05 11.18 -17.55 -0.20 0.85 16 5 N -0.49 -6.57 10.36 -13.25 -0.14 -6.70 16 6 C 0.11 1.47 10.84 -17.54 -0.19 1.28 16 7 C -0.11 -1.37 4.39 -104.48 -0.46 -1.83 16 8 C -0.10 -1.16 5.18 -29.03 -0.15 -1.31 16 9 C 0.51 7.39 7.15 -10.98 -0.08 7.31 16 10 O -0.54 -9.73 16.03 5.55 0.09 -9.64 16 11 N -0.72 -10.43 5.39 -60.30 -0.32 -10.75 16 12 C 0.11 1.73 5.23 -4.04 -0.02 1.71 16 13 C 0.16 2.85 3.05 -67.93 -0.21 2.64 16 14 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 15 C -0.16 -2.65 9.49 37.16 0.35 -2.30 16 16 N -0.75 -16.02 4.37 -53.42 -0.23 -16.26 16 17 C -0.25 -6.46 10.41 -15.06 -0.16 -6.61 16 18 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 19 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 20 N -0.93 -27.93 13.97 55.49 0.78 -27.15 16 21 Si 0.88 21.07 27.74 -169.99 -4.71 16.35 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 27 H 0.07 0.73 6.36 -51.93 -0.33 0.40 16 28 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.11 0.95 7.10 -51.93 -0.37 0.58 16 32 H 0.11 1.05 8.06 -51.93 -0.42 0.63 16 33 H 0.41 5.86 8.14 -40.82 -0.33 5.53 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.36 7.84 5.66 -40.82 -0.23 7.60 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 336.95 15.07 5.08 5.08 Total: -1.00 -32.72 336.95 -7.26 -39.98 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -5.92 Total: 11.03 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.87 Total: -1.93 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: 0.08 Total: -60.87 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.71 Total: 16.35 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.72 -7.26 -39.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713316332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.121 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds