Wall clock time and date at job start Mon Mar 30 2020 01:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38671 * 120.79228 * 2 1 4 4 C 1.38181 * 119.16318 * 180.02562 * 3 2 1 5 5 N 1.31886 * 120.76668 * 0.02562 * 4 3 2 6 6 C 1.31865 * 121.72347 * 359.68705 * 5 4 3 7 7 C 1.38218 * 120.75925 * 0.58061 * 6 5 4 8 8 C 1.50701 * 120.41710 * 179.73203 * 7 6 5 9 9 C 1.50703 * 109.47355 * 264.72046 * 8 7 6 10 10 O 1.21283 * 119.99488 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00290 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27728 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 H 1.09002 * 109.47682 * 64.99618 * 13 12 11 15 15 C 1.53003 * 109.47530 * 184.99929 * 13 12 11 16 16 N 1.46506 * 109.47012 * 304.99483 * 13 12 11 17 17 C 1.36937 * 119.99934 * 154.99714 * 16 13 12 18 18 H 1.07998 * 120.00035 * 0.02562 * 17 16 13 19 19 C 1.38810 * 120.00229 * 180.02562 * 17 16 13 20 20 N 1.31614 * 120.00215 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99755 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47094 * 89.99844 * 21 19 17 23 23 H 1.48504 * 109.47093 * 210.00291 * 21 19 17 24 24 H 1.48497 * 109.47085 * 329.99855 * 21 19 17 25 25 H 1.09004 * 109.47109 * 269.98435 * 1 2 3 26 26 H 1.09001 * 109.46909 * 29.97556 * 1 2 3 27 27 H 1.08995 * 109.47624 * 149.98096 * 1 2 3 28 28 H 1.07996 * 120.42236 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.61921 * 179.97438 * 4 3 2 30 30 H 1.07999 * 119.61789 * 180.28608 * 6 5 4 31 31 H 1.08998 * 109.47477 * 144.71892 * 8 7 6 32 32 H 1.09002 * 109.47412 * 24.72151 * 8 7 6 33 33 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 35 35 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 36 36 H 1.09000 * 109.46800 * 300.00452 * 15 13 12 37 37 H 1.09002 * 109.46892 * 59.99206 * 15 13 12 38 38 H 1.09001 * 109.47478 * 179.97438 * 15 13 12 39 39 H 0.97000 * 120.00390 * 335.00529 * 16 13 12 40 40 H 0.97001 * 120.00086 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1519 -0.0005 5 7 4.2403 0.0000 -0.0016 6 6 3.5982 -1.1518 0.0040 7 6 2.2166 -1.1909 -0.0008 8 6 1.4907 -2.5116 -0.0005 9 6 1.1392 -2.8921 -1.4157 10 8 1.4474 -2.1623 -2.3341 11 7 0.4815 -4.0427 -1.6606 12 6 0.1452 -4.4154 -3.0369 13 6 -0.5874 -5.7585 -3.0370 14 1 -1.5439 -5.6508 -2.5255 15 6 -0.8283 -6.2081 -4.4795 16 7 0.2274 -6.7592 -2.3434 17 6 -0.3700 -7.8476 -1.7657 18 1 -1.4418 -7.9685 -1.8218 19 6 0.4018 -8.7955 -1.1080 20 7 -0.1723 -9.8419 -0.5532 21 14 2.2555 -8.5860 -1.0103 22 1 2.6030 -7.8174 0.2118 23 1 2.9024 -9.9216 -0.9559 24 1 2.7346 -7.8525 -2.2093 25 1 -0.3633 -0.0003 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5141 28 1 1.6968 2.1377 -0.0004 29 1 4.1584 2.0753 -0.0010 30 1 4.1584 -2.0751 0.0077 31 1 0.5784 -2.4246 0.5896 32 1 2.1322 -3.2787 0.4333 33 1 0.2347 -4.6261 -0.9260 34 1 -0.4975 -3.6509 -3.4736 35 1 1.0595 -4.5002 -3.6242 36 1 -1.4344 -5.4636 -4.9957 37 1 0.1282 -6.3158 -4.9910 38 1 -1.3498 -7.1652 -4.4796 39 1 1.1900 -6.6508 -2.2931 40 1 0.3671 -10.5044 -0.0940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713316332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:27 Heat of formation + Delta-G solvation = -23.565263 kcal Electronic energy + Delta-G solvation = -21158.542011 eV Core-core repulsion = 17972.194554 eV Total energy + Delta-G solvation = -3186.347457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.56013 -40.35558 -38.06409 -35.36914 -35.18209 -33.80916 -33.34357 -31.24277 -29.63291 -28.52480 -26.78188 -25.29122 -23.77956 -22.77243 -21.80456 -21.15984 -19.80303 -17.99597 -17.76653 -17.46572 -17.12395 -16.95099 -16.13016 -15.87414 -15.68382 -15.27585 -14.85991 -14.56974 -14.31077 -14.23213 -13.85791 -13.74448 -13.71401 -13.55124 -13.37905 -13.28596 -12.85174 -12.82428 -12.48285 -12.27942 -12.12488 -11.79238 -11.69707 -11.07277 -10.96804 -10.41376 -10.32121 -10.04147 -9.90495 -9.33912 -7.99494 -5.33253 0.15731 0.33040 1.39586 1.42331 1.48829 1.64185 2.27390 2.49653 2.88937 3.32445 3.49202 3.57025 3.68845 3.82157 3.89840 3.94767 4.02743 4.06994 4.34269 4.47384 4.49682 4.60292 4.60808 4.70263 4.72106 4.74658 4.83764 4.90611 5.00466 5.05529 5.19385 5.23739 5.39020 5.42062 5.57794 5.81205 5.81941 6.23776 6.59034 7.03728 7.09745 7.25214 7.84529 8.03254 9.21771 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021416 B = 0.004184 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.145372 B = 6690.342127 C = 7347.157886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.038 4.038 3 C -0.175 4.175 4 C 0.084 3.916 5 N -0.519 5.519 6 C 0.092 3.908 7 C -0.126 4.126 8 C -0.098 4.098 9 C 0.514 3.486 10 O -0.579 6.579 11 N -0.716 5.716 12 C 0.122 3.878 13 C 0.164 3.836 14 H 0.063 0.937 15 C -0.158 4.158 16 N -0.748 5.748 17 C -0.222 4.222 18 H 0.063 0.937 19 C -0.056 4.056 20 N -0.982 5.982 21 Si 0.945 3.055 22 H -0.271 1.271 23 H -0.304 1.304 24 H -0.262 1.262 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.163 0.837 29 H 0.179 0.821 30 H 0.156 0.844 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.413 0.587 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.048 0.952 38 H 0.041 0.959 39 H 0.364 0.636 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.732 22.174 1.938 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.046 4.046 3 C -0.194 4.194 4 C -0.072 4.072 5 N -0.228 5.228 6 C -0.064 4.064 7 C -0.129 4.129 8 C -0.138 4.138 9 C 0.301 3.699 10 O -0.459 6.459 11 N -0.368 5.368 12 C -0.002 4.002 13 C 0.056 3.944 14 H 0.081 0.919 15 C -0.218 4.218 16 N -0.392 5.392 17 C -0.353 4.353 18 H 0.081 0.919 19 C -0.248 4.248 20 N -0.633 5.633 21 Si 0.774 3.226 22 H -0.196 1.196 23 H -0.231 1.231 24 H -0.187 1.187 25 H 0.116 0.884 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.180 0.820 29 H 0.196 0.804 30 H 0.174 0.826 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.250 0.750 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.197 0.803 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.674 22.554 1.337 22.752 hybrid contribution 0.186 -1.028 0.294 1.086 sum 2.861 21.526 1.631 21.776 Atomic orbital electron populations 1.20893 0.88846 1.03659 1.03880 1.20533 0.97964 0.92498 0.93602 1.22329 0.95436 0.99454 1.02203 1.23216 0.92705 0.96473 0.94779 1.67666 1.42127 0.99273 1.13732 1.22814 0.91651 0.96631 0.95341 1.20319 0.94796 0.95140 1.02611 1.20664 1.03784 0.95573 0.93769 1.20874 0.76843 0.80483 0.91679 1.90688 1.55074 1.52552 1.47625 1.46047 1.58139 1.22446 1.10191 1.21572 0.99587 0.95941 0.83133 1.20648 0.94276 0.86444 0.93038 0.91904 1.22236 1.01381 1.01197 0.97002 1.42827 1.05330 1.24834 1.66237 1.18989 0.92824 0.98379 1.25137 0.91930 1.25353 1.01702 0.96830 1.00932 1.69861 1.36212 1.14033 1.43169 0.85569 0.81761 0.76587 0.78732 1.19636 1.23114 1.18726 0.88374 0.89814 0.92088 0.81989 0.80443 0.82628 0.85161 0.86056 0.75040 0.89915 0.92690 0.90607 0.93319 0.94017 0.80322 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 9.31 71.24 0.66 -1.11 16 2 C -0.04 -0.77 5.92 -19.67 -0.12 -0.89 16 3 C -0.17 -3.15 9.82 22.36 0.22 -2.93 16 4 C 0.08 1.73 11.18 84.67 0.95 2.67 16 5 N -0.52 -13.55 10.36 -195.84 -2.03 -15.58 16 6 C 0.09 2.32 10.84 84.68 0.92 3.24 16 7 C -0.13 -2.90 4.39 -19.78 -0.09 -2.99 16 8 C -0.10 -1.99 5.18 29.10 0.15 -1.84 16 9 C 0.51 13.94 7.15 87.66 0.63 14.56 16 10 O -0.58 -19.94 16.03 -3.04 -0.05 -19.99 16 11 N -0.72 -19.38 5.39 -463.07 -2.49 -21.87 16 12 C 0.12 3.49 5.23 86.38 0.45 3.95 16 13 C 0.16 5.38 3.05 44.99 0.14 5.52 16 14 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 15 C -0.16 -4.84 9.49 71.98 0.68 -4.16 16 16 N -0.75 -31.04 4.37 -322.93 -1.41 -32.45 16 17 C -0.22 -11.56 10.41 84.03 0.87 -10.69 16 18 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 19 C -0.06 -3.13 5.50 84.86 0.47 -2.66 16 20 N -0.98 -60.16 13.97 21.65 0.30 -59.86 16 21 Si 0.95 43.30 27.74 68.60 1.90 45.21 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 24 H -0.26 -11.18 6.52 99.48 0.65 -10.53 16 25 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.08 1.07 8.10 -2.39 -0.02 1.06 16 27 H 0.06 1.08 6.36 -2.39 -0.02 1.06 16 28 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 29 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 31 H 0.13 1.98 7.10 -2.39 -0.02 1.96 16 32 H 0.12 2.12 8.06 -2.39 -0.02 2.10 16 33 H 0.41 10.94 8.14 -92.71 -0.75 10.18 16 34 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 37 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.36 14.99 5.66 -92.71 -0.52 14.46 16 40 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -71.03 336.95 1.87 -69.16 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: -0.29 Total: 32.70 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 5.94 Total: 2.69 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -5.63 Total: -129.77 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.05 Total: -19.99 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.90 Total: 45.21 kcal Total: -71.03 1.87 -69.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713316332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.599 kcal (2) G-P(sol) polarization free energy of solvation -71.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds