Wall clock time and date at job start Mon Mar 30 2020 02:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38221 * 120.41773 * 2 1 4 4 N 1.31862 * 120.76221 * 180.25125 * 3 2 1 5 5 C 1.31881 * 121.72315 * 0.04192 * 4 3 2 6 6 C 1.38185 * 120.76978 * 359.96041 * 5 4 3 7 7 C 1.38635 * 120.41887 * 180.27454 * 2 1 3 8 8 C 1.50701 * 120.78677 * 359.70635 * 7 2 1 9 9 C 1.50692 * 109.47149 * 85.00080 * 8 7 2 10 10 O 1.21287 * 120.00216 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00262 * 179.97438 * 9 8 7 12 12 C 1.46508 * 119.99669 * 359.97438 * 11 9 8 13 13 C 1.46499 * 120.00559 * 179.97438 * 11 9 8 14 14 C 1.53007 * 109.46954 * 89.99899 * 13 11 9 15 15 N 1.46499 * 109.46954 * 180.02562 * 14 13 11 16 16 C 1.36942 * 119.99632 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00120 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99874 * 180.02562 * 16 15 14 19 19 N 1.31613 * 120.00032 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 120.00112 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47082 * 89.99268 * 20 18 16 22 22 H 1.48495 * 109.47164 * 209.99895 * 20 18 16 23 23 H 1.48508 * 109.46893 * 330.00157 * 20 18 16 24 24 H 1.08999 * 109.47245 * 269.72372 * 1 2 3 25 25 H 1.08991 * 109.46674 * 29.72400 * 1 2 3 26 26 H 1.09007 * 109.46846 * 149.72305 * 1 2 3 27 27 H 1.07993 * 119.62150 * 0.27487 * 3 2 1 28 28 H 1.08011 * 119.61586 * 179.97438 * 5 4 3 29 29 H 1.07998 * 120.41936 * 180.02562 * 6 5 4 30 30 H 1.09005 * 109.46822 * 205.00093 * 8 7 2 31 31 H 1.08995 * 109.47233 * 324.99475 * 8 7 2 32 32 H 1.09005 * 109.46730 * 90.00396 * 12 11 9 33 33 H 1.08997 * 109.47074 * 209.99569 * 12 11 9 34 34 H 1.08998 * 109.47179 * 330.00380 * 12 11 9 35 35 H 1.08997 * 109.47594 * 209.99934 * 13 11 9 36 36 H 1.08998 * 109.47227 * 330.00313 * 13 11 9 37 37 H 1.08997 * 109.46999 * 300.00399 * 14 13 11 38 38 H 1.08998 * 109.46815 * 60.00162 * 14 13 11 39 39 H 0.96993 * 120.00320 * 0.02562 * 15 14 13 40 40 H 0.97004 * 119.99934 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0050 5 6 4.2256 0.0823 -0.0109 6 6 3.5948 -1.1471 -0.0113 7 6 2.2090 -1.1955 -0.0057 8 6 1.4831 -2.5162 -0.0054 9 6 1.1264 -2.8937 -1.4200 10 8 1.4311 -2.1620 -2.3381 11 7 0.4687 -4.0442 -1.6651 12 6 0.1011 -4.9283 -0.5561 13 6 0.1214 -4.4110 -3.0402 14 6 1.2597 -5.2299 -3.6526 15 7 0.9126 -5.5961 -5.0280 16 6 1.7858 -6.3352 -5.7807 17 1 2.7300 -6.6485 -5.3603 18 6 1.4572 -6.6818 -7.0841 19 7 2.2962 -7.3926 -7.8074 20 14 -0.1756 -6.1394 -7.8115 21 1 -0.0104 -4.8177 -8.4680 22 1 -0.6267 -7.1374 -8.8143 23 1 -1.1878 -6.0317 -6.7302 24 1 -0.3634 -0.0050 1.0276 25 1 -0.3632 0.8924 -0.5095 26 1 -0.3633 -0.8876 -0.5182 27 1 1.6675 2.1276 0.0045 28 1 5.3047 0.1285 -0.0153 29 1 4.1737 -2.0588 -0.0158 30 1 2.1263 -3.2841 0.4244 31 1 0.5731 -2.4305 0.5883 32 1 -0.8871 -4.6551 -0.1860 33 1 0.0858 -5.9610 -0.9045 34 1 0.8309 -4.8264 0.2470 35 1 -0.7928 -5.0045 -3.0382 36 1 -0.0335 -3.5071 -3.6293 37 1 2.1739 -4.6364 -3.6546 38 1 1.4146 -6.1338 -3.0636 39 1 0.0648 -5.3145 -5.4057 40 1 2.0664 -7.6351 -8.7181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713592033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:05 Heat of formation + Delta-G solvation = 14.808888 kcal Electronic energy + Delta-G solvation = -21076.326127 eV Core-core repulsion = 17891.642698 eV Total energy + Delta-G solvation = -3184.683429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.77630 -39.55176 -36.14950 -34.63460 -34.42040 -32.61811 -31.59971 -29.67645 -28.23830 -27.28671 -26.43863 -23.84919 -22.84150 -21.90308 -21.30924 -19.28489 -17.65121 -17.17828 -17.00604 -16.76080 -15.83386 -15.43092 -15.18923 -14.54432 -14.31530 -13.92737 -13.81327 -13.55139 -13.30543 -13.27543 -12.95644 -12.92992 -12.72905 -12.59790 -12.41157 -12.27434 -11.62868 -11.51452 -11.17090 -11.09627 -10.76016 -10.18340 -10.04028 -9.61234 -9.59441 -9.51358 -9.02395 -8.90581 -8.65285 -7.25644 -5.77046 -3.13500 1.00311 1.07526 2.58033 2.94270 3.36893 3.41121 3.45542 3.66240 4.24720 4.35594 4.48998 4.50602 4.59067 4.73793 4.78540 4.93205 5.05859 5.12801 5.20759 5.26743 5.31891 5.36328 5.45388 5.48895 5.55970 5.58399 5.62794 5.71965 5.76791 5.90571 5.91222 6.16069 6.37515 6.56957 6.60391 6.77033 7.33656 7.85223 7.97623 8.14966 8.41176 9.19541 9.91705 10.10782 11.41273 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024011 B = 0.003600 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.854889 B = 7775.099239 C = 8068.952915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.122 4.122 3 C 0.097 3.903 4 N -0.485 5.485 5 C 0.092 3.908 6 C -0.155 4.155 7 C -0.023 4.023 8 C -0.104 4.104 9 C 0.512 3.488 10 O -0.522 6.522 11 N -0.612 5.612 12 C 0.075 3.925 13 C 0.104 3.896 14 C 0.147 3.853 15 N -0.754 5.754 16 C -0.244 4.244 17 H 0.090 0.910 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.886 3.114 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.277 1.277 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.153 0.847 28 H 0.155 0.845 29 H 0.134 0.866 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.030 0.970 38 H 0.026 0.974 39 H 0.361 0.639 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.228 11.787 23.045 26.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.124 4.124 3 C -0.060 4.060 4 N -0.193 5.193 5 C -0.065 4.065 6 C -0.175 4.175 7 C -0.031 4.031 8 C -0.144 4.144 9 C 0.299 3.701 10 O -0.397 6.397 11 N -0.347 5.347 12 C -0.068 4.068 13 C -0.018 4.018 14 C 0.019 3.981 15 N -0.400 5.400 16 C -0.374 4.374 17 H 0.107 0.893 18 C -0.191 4.191 19 N -0.582 5.582 20 Si 0.716 3.284 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.204 1.204 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.170 0.830 28 H 0.172 0.828 29 H 0.152 0.848 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.048 0.952 38 H 0.044 0.956 39 H 0.193 0.807 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.414 12.843 22.479 26.263 hybrid contribution -1.499 -0.739 -0.671 1.801 sum -5.913 12.105 21.808 25.634 Atomic orbital electron populations 1.20737 0.90437 1.03516 1.02135 1.20721 0.97427 0.93614 1.00658 1.22596 0.89962 0.97212 0.96257 1.67634 1.08323 1.31501 1.11831 1.22679 1.00314 0.87563 0.95900 1.22016 0.94346 0.99933 1.01189 1.19573 0.93574 0.93749 0.96223 1.20744 1.02229 0.95519 0.95881 1.20340 0.78053 0.81023 0.90670 1.90782 1.52133 1.50729 1.46065 1.47785 1.57784 1.21050 1.08047 1.21860 1.00278 0.95285 0.89381 1.21736 0.98485 1.00600 0.81017 1.20881 0.95408 0.95701 0.86144 1.42556 1.20815 1.65920 1.10684 1.19027 0.99270 1.24942 0.94186 0.89261 1.24670 0.97947 1.00008 0.96461 1.69701 1.36063 1.42615 1.09772 0.86524 0.84678 0.78270 0.78907 1.20948 1.21639 1.20365 0.90898 0.90956 0.91453 0.82958 0.82754 0.84794 0.87520 0.87584 0.92509 0.90319 0.91107 0.90470 0.89785 0.95162 0.95606 0.80661 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.30 36.01 0.33 -0.59 16 2 C -0.12 -1.32 5.90 -104.48 -0.62 -1.94 16 3 C 0.10 1.09 10.86 -17.54 -0.19 0.90 16 4 N -0.48 -6.14 10.36 -13.25 -0.14 -6.28 16 5 C 0.09 1.04 11.18 -17.55 -0.20 0.84 16 6 C -0.16 -1.70 9.80 -39.44 -0.39 -2.08 16 7 C -0.02 -0.25 4.41 -104.32 -0.46 -0.71 16 8 C -0.10 -0.95 3.74 -29.04 -0.11 -1.06 16 9 C 0.51 6.93 6.98 -10.99 -0.08 6.85 16 10 O -0.52 -9.60 15.61 5.55 0.09 -9.52 16 11 N -0.61 -7.68 2.87 -181.57 -0.52 -8.20 16 12 C 0.08 0.60 10.24 59.85 0.61 1.21 16 13 C 0.10 1.65 5.52 -4.04 -0.02 1.62 16 14 C 0.15 2.96 6.58 -4.04 -0.03 2.94 16 15 N -0.75 -18.56 5.41 -59.91 -0.32 -18.89 16 16 C -0.24 -7.15 10.47 -15.06 -0.16 -7.30 16 17 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 18 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 19 N -0.93 -29.83 13.97 55.49 0.78 -29.05 16 20 Si 0.89 22.44 27.74 -169.99 -4.71 17.73 16 21 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 26 H 0.07 0.62 6.35 -51.93 -0.33 0.29 16 27 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 28 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 29 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.11 0.74 7.33 -51.93 -0.38 0.36 16 31 H 0.11 0.69 7.08 -51.93 -0.37 0.32 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.64 8.07 -51.93 -0.42 0.23 16 34 H 0.07 0.40 6.44 -51.93 -0.33 0.06 16 35 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 36 H 0.08 1.47 7.42 -51.93 -0.39 1.09 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.36 8.56 5.53 -40.82 -0.23 8.33 16 40 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -37.08 334.68 -7.01 -44.10 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.83 Total: 4.35 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -1.39 Total: 0.72 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: -0.21 Total: -62.42 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.73 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -37.08 -7.01 -44.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713592033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.908 kcal (2) G-P(sol) polarization free energy of solvation -37.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds