Wall clock time and date at job start Mon Mar 30 2020 02:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38221 * 120.41773 * 2 1 4 4 N 1.31862 * 120.76221 * 180.25125 * 3 2 1 5 5 C 1.31881 * 121.72315 * 0.04192 * 4 3 2 6 6 C 1.38185 * 120.76978 * 359.96041 * 5 4 3 7 7 C 1.38635 * 120.41887 * 180.27454 * 2 1 3 8 8 C 1.50701 * 120.78677 * 359.70635 * 7 2 1 9 9 C 1.50692 * 109.47149 * 85.00080 * 8 7 2 10 10 O 1.21287 * 120.00216 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00262 * 179.97438 * 9 8 7 12 12 C 1.46508 * 119.99669 * 359.97438 * 11 9 8 13 13 C 1.46499 * 120.00559 * 179.97438 * 11 9 8 14 14 C 1.53007 * 109.46954 * 89.99899 * 13 11 9 15 15 N 1.46499 * 109.46954 * 180.02562 * 14 13 11 16 16 C 1.36942 * 119.99632 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00120 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99874 * 180.02562 * 16 15 14 19 19 N 1.31613 * 120.00032 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 120.00112 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47082 * 89.99268 * 20 18 16 22 22 H 1.48495 * 109.47164 * 209.99895 * 20 18 16 23 23 H 1.48508 * 109.46893 * 330.00157 * 20 18 16 24 24 H 1.08999 * 109.47245 * 269.72372 * 1 2 3 25 25 H 1.08991 * 109.46674 * 29.72400 * 1 2 3 26 26 H 1.09007 * 109.46846 * 149.72305 * 1 2 3 27 27 H 1.07993 * 119.62150 * 0.27487 * 3 2 1 28 28 H 1.08011 * 119.61586 * 179.97438 * 5 4 3 29 29 H 1.07998 * 120.41936 * 180.02562 * 6 5 4 30 30 H 1.09005 * 109.46822 * 205.00093 * 8 7 2 31 31 H 1.08995 * 109.47233 * 324.99475 * 8 7 2 32 32 H 1.09005 * 109.46730 * 90.00396 * 12 11 9 33 33 H 1.08997 * 109.47074 * 209.99569 * 12 11 9 34 34 H 1.08998 * 109.47179 * 330.00380 * 12 11 9 35 35 H 1.08997 * 109.47594 * 209.99934 * 13 11 9 36 36 H 1.08998 * 109.47227 * 330.00313 * 13 11 9 37 37 H 1.08997 * 109.46999 * 300.00399 * 14 13 11 38 38 H 1.08998 * 109.46815 * 60.00162 * 14 13 11 39 39 H 0.96993 * 120.00320 * 0.02562 * 15 14 13 40 40 H 0.97004 * 119.99934 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0050 5 6 4.2256 0.0823 -0.0109 6 6 3.5948 -1.1471 -0.0113 7 6 2.2090 -1.1955 -0.0057 8 6 1.4831 -2.5162 -0.0054 9 6 1.1264 -2.8937 -1.4200 10 8 1.4311 -2.1620 -2.3381 11 7 0.4687 -4.0442 -1.6651 12 6 0.1011 -4.9283 -0.5561 13 6 0.1214 -4.4110 -3.0402 14 6 1.2597 -5.2299 -3.6526 15 7 0.9126 -5.5961 -5.0280 16 6 1.7858 -6.3352 -5.7807 17 1 2.7300 -6.6485 -5.3603 18 6 1.4572 -6.6818 -7.0841 19 7 2.2962 -7.3926 -7.8074 20 14 -0.1756 -6.1394 -7.8115 21 1 -0.0104 -4.8177 -8.4680 22 1 -0.6267 -7.1374 -8.8143 23 1 -1.1878 -6.0317 -6.7302 24 1 -0.3634 -0.0050 1.0276 25 1 -0.3632 0.8924 -0.5095 26 1 -0.3633 -0.8876 -0.5182 27 1 1.6675 2.1276 0.0045 28 1 5.3047 0.1285 -0.0153 29 1 4.1737 -2.0588 -0.0158 30 1 2.1263 -3.2841 0.4244 31 1 0.5731 -2.4305 0.5883 32 1 -0.8871 -4.6551 -0.1860 33 1 0.0858 -5.9610 -0.9045 34 1 0.8309 -4.8264 0.2470 35 1 -0.7928 -5.0045 -3.0382 36 1 -0.0335 -3.5071 -3.6293 37 1 2.1739 -4.6364 -3.6546 38 1 1.4146 -6.1338 -3.0636 39 1 0.0648 -5.3145 -5.4057 40 1 2.0664 -7.6351 -8.7181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713592033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:05 Heat of formation + Delta-G solvation = -11.724446 kcal Electronic energy + Delta-G solvation = -21077.476699 eV Core-core repulsion = 17891.642698 eV Total energy + Delta-G solvation = -3185.834001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.63948 -40.52684 -37.54538 -36.15305 -35.36340 -33.71588 -33.32080 -30.96753 -29.32207 -28.01664 -27.42444 -25.45054 -23.85447 -23.25631 -22.53519 -20.40495 -19.61452 -18.16515 -17.84081 -17.64075 -17.02505 -16.48760 -16.29564 -15.98959 -15.60118 -15.48674 -15.05261 -14.81794 -14.35521 -14.28843 -14.06424 -13.73588 -13.59385 -13.49488 -13.38411 -13.18282 -13.01340 -12.94886 -12.72708 -12.35845 -12.25412 -12.11979 -11.85571 -11.08991 -11.04185 -10.42691 -10.39656 -9.80186 -9.70550 -9.39567 -8.07869 -5.43896 0.20565 0.25116 1.34964 1.40876 1.47298 1.58823 1.98360 2.45048 2.83986 3.23297 3.48249 3.59434 3.64317 3.76846 3.79827 4.01679 4.07210 4.14471 4.16209 4.33328 4.41458 4.48904 4.51999 4.55488 4.73900 4.77377 4.78671 4.88147 4.97221 4.99734 5.04686 5.08036 5.19636 5.38623 5.47786 5.68475 5.81168 6.15031 6.38784 7.00635 7.03205 7.15799 7.74127 7.95108 9.13473 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024011 B = 0.003600 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.854889 B = 7775.099239 C = 8068.952915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.129 4.129 3 C 0.080 3.920 4 N -0.512 5.512 5 C 0.074 3.926 6 C -0.166 4.166 7 C -0.039 4.039 8 C -0.093 4.093 9 C 0.508 3.492 10 O -0.581 6.581 11 N -0.610 5.610 12 C 0.066 3.934 13 C 0.117 3.883 14 C 0.150 3.850 15 N -0.755 5.755 16 C -0.244 4.244 17 H 0.052 0.948 18 C -0.062 4.062 19 N -0.982 5.982 20 Si 0.959 3.041 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.244 1.244 24 H 0.100 0.900 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.171 0.829 28 H 0.172 0.828 29 H 0.149 0.851 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.000 1.000 38 H 0.035 0.965 39 H 0.368 0.632 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.867 11.918 25.163 28.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.131 4.131 3 C -0.077 4.077 4 N -0.220 5.220 5 C -0.082 4.082 6 C -0.185 4.185 7 C -0.048 4.048 8 C -0.132 4.132 9 C 0.297 3.703 10 O -0.461 6.461 11 N -0.343 5.343 12 C -0.075 4.075 13 C -0.007 4.007 14 C 0.022 3.978 15 N -0.402 5.402 16 C -0.374 4.374 17 H 0.070 0.930 18 C -0.253 4.253 19 N -0.632 5.632 20 Si 0.785 3.215 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.168 1.168 24 H 0.118 0.882 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.188 0.812 28 H 0.189 0.811 29 H 0.167 0.833 30 H 0.152 0.848 31 H 0.158 0.842 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.018 0.982 38 H 0.053 0.947 39 H 0.202 0.798 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.080 12.966 24.684 28.767 hybrid contribution -0.567 -0.797 -1.267 1.601 sum -7.647 12.169 23.417 27.476 Atomic orbital electron populations 1.20776 0.88631 1.03306 1.03758 1.21058 0.98850 0.93416 0.99806 1.22998 0.89850 0.98475 0.96372 1.67633 1.09257 1.32351 1.12796 1.23046 1.01328 0.87673 0.96131 1.22294 0.94905 1.00397 1.00927 1.19911 0.93850 0.94843 0.96168 1.20796 1.04049 0.95146 0.93182 1.21115 0.76865 0.80463 0.91868 1.90760 1.54463 1.52643 1.48184 1.47886 1.57209 1.21480 1.07721 1.22225 1.02687 0.94232 0.88399 1.21403 0.97388 0.99169 0.82721 1.20964 0.96206 0.96160 0.84452 1.42518 1.20334 1.65251 1.12097 1.18982 0.98712 1.24901 0.94844 0.93024 1.25579 1.02460 1.00415 0.96888 1.69889 1.38671 1.44424 1.10222 0.85355 0.80120 0.77394 0.78606 1.20850 1.21579 1.16773 0.88182 0.90578 0.92233 0.81169 0.81115 0.83297 0.84784 0.84186 0.89733 0.90485 0.88322 0.87802 0.91773 0.98170 0.94729 0.79820 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.30 71.24 0.66 -0.87 16 2 C -0.13 -2.62 5.90 -19.77 -0.12 -2.74 16 3 C 0.08 1.75 10.86 84.68 0.92 2.67 16 4 N -0.51 -13.01 10.36 -195.84 -2.03 -15.03 16 5 C 0.07 1.67 11.18 84.67 0.95 2.62 16 6 C -0.17 -3.50 9.80 22.36 0.22 -3.28 16 7 C -0.04 -0.81 4.41 -19.67 -0.09 -0.89 16 8 C -0.09 -1.40 3.74 29.10 0.11 -1.29 16 9 C 0.51 12.80 6.98 87.65 0.61 13.41 16 10 O -0.58 -21.40 15.61 -3.05 -0.05 -21.45 16 11 N -0.61 -13.70 2.87 -846.74 -2.43 -16.14 16 12 C 0.07 0.76 10.24 127.77 1.31 2.07 16 13 C 0.12 3.49 5.52 86.38 0.48 3.96 16 14 C 0.15 5.98 6.58 86.38 0.57 6.55 16 15 N -0.76 -36.84 5.41 -343.45 -1.86 -38.69 16 16 C -0.24 -14.50 10.47 84.03 0.88 -13.62 16 17 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 18 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 19 N -0.98 -64.20 13.97 21.65 0.30 -63.90 16 20 Si 0.96 45.95 27.74 68.60 1.90 47.85 16 21 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.24 -10.22 6.52 99.48 0.65 -9.57 16 24 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 26 H 0.06 0.96 6.35 -2.38 -0.02 0.94 16 27 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 29 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.13 1.30 7.33 -2.38 -0.02 1.28 16 31 H 0.14 1.17 7.08 -2.39 -0.02 1.15 16 32 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.08 0.96 8.07 -2.39 -0.02 0.94 16 34 H 0.10 0.61 6.44 -2.39 -0.02 0.59 16 35 H 0.10 2.55 8.07 -2.39 -0.02 2.53 16 36 H 0.06 2.19 7.42 -2.39 -0.02 2.18 16 37 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.37 16.75 5.53 -92.71 -0.51 16.23 16 40 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -84.25 334.68 3.27 -80.98 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.47 Total: 21.06 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 6.97 Total: 5.32 kcal Atomic # 7 Polarization: -127.75 SS G_CDS: -6.02 Total: -133.76 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.05 Total: -21.45 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.90 Total: 47.85 kcal Total: -84.25 3.27 -80.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713592033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.256 kcal (2) G-P(sol) polarization free energy of solvation -84.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds