Wall clock time and date at job start Mon Mar 30 2020 01:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38682 * 120.78768 * 2 1 4 4 C 1.38185 * 119.16016 * 179.97438 * 3 2 1 5 5 N 1.31880 * 120.76785 * 0.02562 * 4 3 2 6 6 C 1.31860 * 121.72574 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.76174 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.41702 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47041 * 264.99855 * 8 7 6 10 10 O 1.21284 * 120.00174 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99811 * 180.02562 * 9 8 7 12 12 C 1.46493 * 120.00177 * 359.97438 * 11 9 8 13 13 C 1.46500 * 120.00012 * 180.02562 * 11 9 8 14 14 C 1.52996 * 109.47484 * 89.99298 * 13 11 9 15 15 N 1.46502 * 109.47140 * 179.97438 * 14 13 11 16 16 C 1.36942 * 119.99865 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99927 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99631 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00144 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99806 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46840 * 60.00101 * 20 18 16 22 22 H 1.48501 * 109.46965 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47153 * 300.00268 * 20 18 16 24 24 H 1.08998 * 109.46474 * 90.00522 * 1 2 3 25 25 H 1.08995 * 109.47240 * 210.00075 * 1 2 3 26 26 H 1.09002 * 109.47392 * 330.00783 * 1 2 3 27 27 H 1.07995 * 120.41697 * 0.26627 * 3 2 1 28 28 H 1.08003 * 119.60983 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.61792 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47345 * 25.00235 * 8 7 6 31 31 H 1.09005 * 109.46886 * 144.99972 * 8 7 6 32 32 H 1.09004 * 109.47179 * 90.00060 * 12 11 9 33 33 H 1.09004 * 109.47421 * 210.00103 * 12 11 9 34 34 H 1.09006 * 109.47301 * 330.00398 * 12 11 9 35 35 H 1.09002 * 109.47334 * 209.99982 * 13 11 9 36 36 H 1.09003 * 109.46903 * 329.99492 * 13 11 9 37 37 H 1.08993 * 109.47342 * 300.00012 * 14 13 11 38 38 H 1.09003 * 109.46892 * 60.00187 * 14 13 11 39 39 H 0.97002 * 120.00009 * 0.02562 * 15 14 13 40 40 H 0.97001 * 119.99533 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1914 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0003 0.0005 6 6 3.5984 -1.1515 0.0005 7 6 2.2167 -1.1908 0.0011 8 6 1.4909 -2.5115 0.0005 9 6 1.1399 -2.8912 -1.4150 10 8 1.4491 -2.1614 -2.3331 11 7 0.4824 -4.0417 -1.6608 12 6 0.1095 -4.9235 -0.5520 13 6 0.1416 -4.4111 -3.0369 14 6 1.2820 -5.2322 -3.6420 15 7 0.9409 -5.6020 -5.0179 16 6 1.8165 -6.3445 -5.7644 17 1 2.7584 -6.6578 -5.3387 18 6 1.4935 -6.6945 -7.0683 19 7 0.3459 -6.3122 -7.5872 20 14 2.6876 -7.7079 -8.0864 21 1 2.9293 -9.0102 -7.4148 22 1 2.1114 -7.9450 -9.4344 23 1 3.9715 -6.9738 -8.2196 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6967 2.1378 0.0043 28 1 4.1582 2.0756 0.0001 29 1 4.1586 -2.0749 0.0010 30 1 2.1324 -3.2788 0.4341 31 1 0.5784 -2.4249 0.5904 32 1 -0.8801 -4.6490 -0.1865 33 1 0.0949 -5.9569 -0.8986 34 1 0.8360 -4.8208 0.2541 35 1 -0.7732 -5.0037 -3.0382 36 1 -0.0096 -3.5082 -3.6286 37 1 2.1968 -4.6395 -3.6408 38 1 1.4333 -6.1350 -3.0503 39 1 0.0948 -5.3209 -5.4001 40 1 0.1204 -6.5565 -8.4985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713600976.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:20 Heat of formation + Delta-G solvation = -13.837150 kcal Electronic energy + Delta-G solvation = -21023.442742 eV Core-core repulsion = 17837.517128 eV Total energy + Delta-G solvation = -3185.925614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.61812 -40.48600 -37.41382 -36.06679 -35.37690 -33.68462 -33.16556 -30.43250 -29.17612 -28.26730 -27.34348 -25.60507 -23.92351 -23.27939 -22.48792 -20.22094 -19.20799 -18.12316 -17.80659 -17.43339 -17.15285 -16.75485 -16.28365 -15.83472 -15.49287 -15.23449 -15.06582 -14.92727 -14.30929 -14.10553 -14.04440 -13.85169 -13.62532 -13.51350 -13.19927 -13.08360 -12.87823 -12.85852 -12.58240 -12.37808 -12.19594 -12.17584 -11.89479 -11.00293 -10.97315 -10.40484 -10.33241 -9.89950 -9.67555 -9.09147 -8.00043 -5.31066 0.15591 0.33579 1.44461 1.48839 1.54827 1.63208 2.00946 2.54223 2.85579 3.33046 3.48977 3.66058 3.74845 3.83171 3.95648 3.98913 4.06122 4.18779 4.23749 4.35890 4.47002 4.48931 4.55796 4.59337 4.69300 4.75040 4.79613 4.88353 5.00173 5.00710 5.05035 5.08928 5.20369 5.40343 5.42560 5.53803 5.81784 6.21508 6.43541 7.04387 7.20099 7.27558 7.99314 8.24583 9.23125 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023801 B = 0.003461 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.134611 B = 8089.221245 C = 8583.561157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.040 4.040 3 C -0.178 4.178 4 C 0.083 3.917 5 N -0.521 5.521 6 C 0.093 3.907 7 C -0.131 4.131 8 C -0.086 4.086 9 C 0.506 3.494 10 O -0.584 6.584 11 N -0.610 5.610 12 C 0.066 3.934 13 C 0.123 3.877 14 C 0.149 3.851 15 N -0.744 5.744 16 C -0.255 4.255 17 H 0.072 0.928 18 C -0.072 4.072 19 N -0.968 5.968 20 Si 0.978 3.022 21 H -0.272 1.272 22 H -0.290 1.290 23 H -0.281 1.281 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.160 0.840 28 H 0.176 0.824 29 H 0.160 0.840 30 H 0.133 0.867 31 H 0.140 0.860 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.056 0.944 37 H -0.004 1.004 38 H 0.031 0.969 39 H 0.375 0.625 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.208 10.516 24.377 26.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.048 4.048 3 C -0.197 4.197 4 C -0.073 4.073 5 N -0.230 5.230 6 C -0.063 4.063 7 C -0.133 4.133 8 C -0.126 4.126 9 C 0.296 3.704 10 O -0.464 6.464 11 N -0.343 5.343 12 C -0.075 4.075 13 C -0.001 4.001 14 C 0.021 3.979 15 N -0.387 5.387 16 C -0.386 4.386 17 H 0.090 0.910 18 C -0.264 4.264 19 N -0.618 5.618 20 Si 0.806 3.194 21 H -0.198 1.198 22 H -0.216 1.216 23 H -0.208 1.208 24 H 0.081 0.919 25 H 0.106 0.894 26 H 0.112 0.888 27 H 0.178 0.822 28 H 0.193 0.807 29 H 0.177 0.823 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.014 0.986 38 H 0.049 0.951 39 H 0.207 0.793 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.995 10.792 23.897 26.240 hybrid contribution -0.430 -0.409 -1.373 1.495 sum -1.426 10.384 22.524 24.844 Atomic orbital electron populations 1.20913 0.88790 1.04944 1.02665 1.20549 0.98032 0.92590 0.93584 1.22336 0.95472 0.99576 1.02333 1.23186 0.92721 0.96503 0.94881 1.67652 1.42229 0.99363 1.13743 1.22863 0.91756 0.96619 0.95078 1.20413 0.94823 0.95546 1.02551 1.20702 1.03928 0.95194 0.92760 1.21252 0.76755 0.80328 0.92102 1.90744 1.54453 1.52822 1.48366 1.47917 1.57230 1.21627 1.07551 1.22211 1.02613 0.94219 0.88427 1.21297 0.97438 0.98761 0.82628 1.20957 0.95790 0.95737 0.85394 1.42398 1.21342 1.64130 1.10842 1.19562 0.99119 1.24957 0.94969 0.90977 1.25630 0.99320 1.03054 0.98431 1.69812 1.24271 1.52142 1.15539 0.85157 0.77922 0.78760 0.77580 1.19770 1.21631 1.20762 0.91882 0.89399 0.88842 0.82219 0.80680 0.82326 0.84882 0.84263 0.89889 0.90672 0.88074 0.88609 0.92579 0.98637 0.95074 0.79258 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.68 71.24 0.69 -1.05 16 2 C -0.04 -0.81 5.92 -19.67 -0.12 -0.93 16 3 C -0.18 -3.40 9.82 22.36 0.22 -3.18 16 4 C 0.08 1.80 11.18 84.67 0.95 2.75 16 5 N -0.52 -14.00 10.36 -195.84 -2.03 -16.03 16 6 C 0.09 2.33 10.84 84.68 0.92 3.25 16 7 C -0.13 -2.90 4.39 -19.77 -0.09 -2.98 16 8 C -0.09 -1.44 3.94 29.10 0.11 -1.33 16 9 C 0.51 13.94 7.67 87.66 0.67 14.61 16 10 O -0.58 -23.07 15.61 -3.04 -0.05 -23.12 16 11 N -0.61 -15.44 2.87 -846.75 -2.43 -17.87 16 12 C 0.07 0.91 10.24 127.77 1.31 2.22 16 13 C 0.12 4.20 5.52 86.38 0.48 4.67 16 14 C 0.15 6.44 6.58 86.38 0.57 7.01 16 15 N -0.74 -40.17 5.60 -343.45 -1.92 -42.09 16 16 C -0.25 -14.96 9.99 84.03 0.84 -14.12 16 17 H 0.07 4.10 7.83 -2.91 -0.02 4.07 16 18 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 19 N -0.97 -60.59 13.06 21.65 0.28 -60.30 16 20 Si 0.98 47.27 29.55 68.60 2.03 49.30 16 21 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 23 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.09 0.96 6.17 -2.39 -0.01 0.95 16 26 H 0.09 0.95 8.10 -2.39 -0.02 0.93 16 27 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 28 H 0.18 2.71 8.06 -2.91 -0.02 2.68 16 29 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.13 1.48 7.32 -2.39 -0.02 1.46 16 31 H 0.14 1.34 6.26 -2.38 -0.01 1.32 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 1.12 8.07 -2.38 -0.02 1.10 16 34 H 0.10 0.78 6.44 -2.38 -0.02 0.77 16 35 H 0.10 2.90 8.07 -2.39 -0.02 2.88 16 36 H 0.06 2.24 7.42 -2.39 -0.02 2.22 16 37 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 38 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.38 21.16 7.67 -92.71 -0.71 20.45 16 40 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -82.03 338.06 3.22 -78.81 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.33 Total: 24.16 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 7.02 Total: 7.14 kcal Atomic # 7 Polarization: -130.18 SS G_CDS: -6.10 Total: -136.29 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.05 Total: -23.12 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -82.03 3.22 -78.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713600976.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.970 kcal (2) G-P(sol) polarization free energy of solvation -82.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds