Wall clock time and date at job start Mon Mar 30 2020 01:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38606 * 120.32759 * 2 1 4 4 N 1.31493 * 120.90027 * 179.74580 * 3 2 1 5 5 C 1.32754 * 121.64601 * 0.57263 * 4 3 2 6 6 C 1.48158 * 119.72460 * 179.70799 * 5 4 3 7 7 O 1.21516 * 119.99838 * 179.72903 * 6 5 4 8 8 N 1.34781 * 120.00075 * 359.72802 * 6 5 4 9 9 C 1.46503 * 119.99847 * 179.72394 * 8 6 5 10 10 C 1.52994 * 109.47033 * 180.27288 * 9 8 6 11 11 N 1.46501 * 109.47412 * 179.97438 * 10 9 8 12 12 C 1.46499 * 119.99623 * 90.00074 * 11 10 9 13 13 C 1.36937 * 120.00041 * 270.00318 * 11 10 9 14 14 H 1.07993 * 119.99834 * 23.04367 * 13 11 10 15 15 C 1.38808 * 119.99826 * 203.04225 * 13 11 10 16 16 N 1.31621 * 120.00366 * 12.93004 * 15 13 11 17 17 Si 1.86796 * 119.99983 * 192.93213 * 15 13 11 18 18 H 1.48495 * 109.47752 * 89.99994 * 17 15 13 19 19 H 1.48504 * 109.47202 * 209.99925 * 17 15 13 20 20 H 1.48497 * 109.47095 * 329.99449 * 17 15 13 21 21 C 1.39264 * 120.54931 * 359.43112 * 5 4 3 22 22 C 1.38588 * 120.32159 * 180.02562 * 2 1 3 23 23 C 1.50701 * 120.75789 * 359.95026 * 22 2 1 24 24 H 1.09009 * 109.46895 * 269.97352 * 1 2 3 25 25 H 1.08996 * 109.47486 * 29.96763 * 1 2 3 26 26 H 1.08997 * 109.47628 * 149.97623 * 1 2 3 27 27 H 1.07997 * 119.55008 * 0.05397 * 3 2 1 28 28 H 0.96995 * 119.99743 * 359.97438 * 8 6 5 29 29 H 1.08994 * 109.47345 * 300.27980 * 9 8 6 30 30 H 1.09001 * 109.46939 * 60.27661 * 9 8 6 31 31 H 1.09003 * 109.47487 * 300.00310 * 10 9 8 32 32 H 1.09007 * 109.47311 * 60.00164 * 10 9 8 33 33 H 1.08998 * 109.47416 * 95.12836 * 12 11 10 34 34 H 1.09002 * 109.46944 * 215.12242 * 12 11 10 35 35 H 1.09003 * 109.47531 * 335.12457 * 12 11 10 36 36 H 0.97000 * 120.00186 * 180.02562 * 16 15 13 37 37 H 1.08008 * 120.46928 * 180.29593 * 21 5 4 38 38 H 1.09005 * 109.46661 * 270.02825 * 23 22 2 39 39 H 1.08991 * 109.46893 * 30.02250 * 23 22 2 40 40 H 1.08998 * 109.47135 * 150.02932 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5216 1.2095 0.0050 5 6 4.2295 0.0864 -0.0011 6 6 5.7096 0.1510 -0.0016 7 8 6.3624 -0.8740 -0.0022 8 7 6.3321 1.3464 -0.0015 9 6 7.7957 1.4102 0.0041 10 6 8.2424 2.8734 0.0099 11 7 9.7060 2.9373 0.0161 12 6 10.4429 2.9726 -1.2496 13 6 10.3852 2.9639 1.2049 14 1 9.9225 2.5749 2.0998 15 6 11.6682 3.4907 1.2595 16 7 12.1364 4.1896 0.2472 17 14 12.7305 3.2077 2.7697 18 1 13.5178 1.9608 2.5948 19 1 13.6553 4.3561 2.9467 20 1 11.8631 3.0815 3.9684 21 6 3.5922 -1.1519 -0.0011 22 6 2.2066 -1.1963 -0.0005 23 6 1.4778 -2.5154 0.0000 24 1 -0.3633 -0.0005 1.0278 25 1 -0.3634 0.8902 -0.5133 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6648 2.1305 0.0009 28 1 5.8110 2.1645 -0.0014 29 1 8.1778 0.9101 0.8940 30 1 8.1843 0.9152 -0.8859 31 1 7.8603 3.3736 -0.8801 32 1 7.8538 3.3685 0.8999 33 1 10.6604 4.0073 -1.5147 34 1 11.3770 2.4213 -1.1416 35 1 9.8398 2.5156 -2.0341 36 1 13.0332 4.5574 0.2853 37 1 4.1694 -2.0648 -0.0013 38 1 1.3024 -2.8331 1.0279 39 1 0.5230 -2.4031 -0.5134 40 1 2.0809 -3.2639 -0.5138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714553636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:35 Heat of formation + Delta-G solvation = 13.153268 kcal Electronic energy + Delta-G solvation = -20557.255106 eV Core-core repulsion = 17372.499883 eV Total energy + Delta-G solvation = -3184.755222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84085 -38.94773 -36.03652 -34.94817 -34.06831 -32.66995 -31.28988 -28.99537 -28.28849 -27.11314 -25.81603 -23.83192 -23.03640 -22.33733 -20.60989 -20.00954 -17.71615 -17.11077 -16.63879 -15.50627 -15.42540 -15.39244 -14.93639 -14.70718 -14.59293 -13.75274 -13.62103 -13.42378 -13.27725 -13.18803 -13.01302 -12.85946 -12.38081 -12.30325 -12.27243 -11.84303 -11.14238 -10.86141 -10.83998 -10.56610 -10.32989 -10.20197 -9.91552 -9.87884 -9.74345 -9.59135 -9.20264 -8.64334 -8.53122 -6.76602 -5.71030 -3.19175 0.48511 0.96527 2.77001 3.30086 3.41587 3.47651 3.49153 3.75933 4.05443 4.32476 4.47555 4.53013 4.54509 4.59854 5.04090 5.06321 5.11755 5.21290 5.28431 5.40783 5.42629 5.56985 5.60179 5.67722 5.74704 5.86275 5.95334 6.00508 6.30235 6.38578 6.63051 6.69249 6.79868 6.92634 7.39708 7.50231 7.74453 7.83279 7.85858 8.38579 8.43454 9.24470 9.86774 10.35134 11.33821 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036355 B = 0.002931 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.007419 B = 9550.037056 C = 9701.249570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.125 4.125 3 C 0.101 3.899 4 N -0.458 5.458 5 C 0.082 3.918 6 C 0.563 3.437 7 O -0.539 6.539 8 N -0.701 5.701 9 C 0.092 3.908 10 C 0.144 3.856 11 N -0.597 5.597 12 C 0.161 3.839 13 C -0.259 4.259 14 H 0.069 0.931 15 C 0.003 3.997 16 N -0.907 5.907 17 Si 0.907 3.093 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.279 1.279 21 C -0.111 4.111 22 C -0.053 4.053 23 C -0.118 4.118 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.161 0.839 28 H 0.407 0.593 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.033 0.967 34 H 0.042 0.958 35 H -0.001 1.001 36 H 0.253 0.747 37 H 0.148 0.852 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.046 -8.682 -2.026 26.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.127 4.127 3 C -0.059 4.059 4 N -0.170 5.170 5 C -0.056 4.056 6 C 0.347 3.653 7 O -0.416 6.416 8 N -0.351 5.351 9 C -0.033 4.033 10 C 0.015 3.985 11 N -0.320 5.320 12 C 0.016 3.984 13 C -0.388 4.388 14 H 0.087 0.913 15 C -0.196 4.196 16 N -0.552 5.552 17 Si 0.737 3.263 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.204 1.204 21 C -0.131 4.131 22 C -0.061 4.061 23 C -0.175 4.175 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.179 0.821 28 H 0.243 0.757 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.018 0.982 36 H 0.063 0.937 37 H 0.165 0.835 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.833 -8.501 -2.052 25.387 hybrid contribution 0.019 -0.490 0.788 0.928 sum -23.814 -8.991 -1.264 25.486 Atomic orbital electron populations 1.20811 0.90006 1.03413 1.02851 1.21005 0.97709 0.93677 1.00299 1.22691 0.89352 0.97592 0.96228 1.67567 1.08604 1.30343 1.10452 1.21272 0.94565 0.89517 1.00234 1.17881 0.85530 0.84372 0.77561 1.90780 1.65868 1.34243 1.50702 1.45950 1.08881 1.08042 1.72203 1.22507 0.76455 1.02168 1.02195 1.20839 0.86409 0.91443 0.99805 1.43792 0.98810 1.85773 1.03633 1.20843 0.93908 0.99451 0.84192 1.19213 0.97812 1.33992 0.87778 0.91290 1.25032 0.99050 0.97770 0.97699 1.70076 1.17215 1.36585 1.31290 0.86222 0.80396 0.77278 0.82449 1.21426 1.21734 1.20431 1.22026 0.94095 0.99258 0.97760 1.20199 0.93262 0.95833 0.96835 1.20881 1.00392 0.93066 1.03119 0.90557 0.90921 0.90851 0.82135 0.75729 0.91327 0.92001 0.93949 0.92816 0.94846 0.93937 0.98235 0.93713 0.83470 0.90295 0.90579 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 9.65 36.00 0.35 -0.20 16 2 C -0.12 -1.03 5.91 -104.36 -0.62 -1.65 16 3 C 0.10 0.98 10.86 -17.56 -0.19 0.79 16 4 N -0.46 -5.85 9.54 -9.80 -0.09 -5.94 16 5 C 0.08 1.16 6.75 -83.01 -0.56 0.60 16 6 C 0.56 9.66 7.81 -12.18 -0.10 9.57 16 7 O -0.54 -10.85 16.32 5.35 0.09 -10.76 16 8 N -0.70 -11.66 5.55 -61.15 -0.34 -12.00 16 9 C 0.09 1.80 6.00 -4.04 -0.02 1.77 16 10 C 0.14 2.98 5.76 -4.04 -0.02 2.96 16 11 N -0.60 -15.37 2.92 -181.12 -0.53 -15.90 16 12 C 0.16 4.05 8.98 59.85 0.54 4.59 16 13 C -0.26 -7.25 9.65 -15.06 -0.15 -7.40 16 14 H 0.07 1.90 7.86 -52.49 -0.41 1.48 16 15 C 0.00 0.08 5.10 -17.43 -0.09 -0.01 16 16 N -0.91 -26.83 10.71 55.49 0.59 -26.24 16 17 Si 0.91 22.29 29.57 -169.99 -5.03 17.27 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.11 -1.33 9.34 -39.05 -0.36 -1.69 16 22 C -0.05 -0.49 5.91 -104.34 -0.62 -1.11 16 23 C -0.12 -0.70 9.67 36.01 0.35 -0.35 16 24 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 25 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 26 H 0.07 0.28 6.06 -51.93 -0.31 -0.03 16 27 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 28 H 0.41 5.99 7.80 -40.82 -0.32 5.67 16 29 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.05 1.10 8.04 -51.92 -0.42 0.68 16 33 H 0.03 0.90 7.34 -51.93 -0.38 0.52 16 34 H 0.04 1.14 7.34 -51.93 -0.38 0.76 16 35 H 0.00 -0.02 8.03 -51.93 -0.42 -0.44 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.15 1.74 7.64 -52.48 -0.40 1.34 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.33 6.07 -51.93 -0.32 0.01 16 40 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -33.25 336.72 -7.59 -40.84 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.87 Total: -0.20 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -1.49 Total: 7.86 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.37 Total: -60.08 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.25 -7.59 -40.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714553636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.993 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds