Wall clock time and date at job start Mon Mar 30 2020 01:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38606 * 120.32759 * 2 1 4 4 N 1.31493 * 120.90027 * 179.74580 * 3 2 1 5 5 C 1.32754 * 121.64601 * 0.57263 * 4 3 2 6 6 C 1.48158 * 119.72460 * 179.70799 * 5 4 3 7 7 O 1.21516 * 119.99838 * 179.72903 * 6 5 4 8 8 N 1.34781 * 120.00075 * 359.72802 * 6 5 4 9 9 C 1.46503 * 119.99847 * 179.72394 * 8 6 5 10 10 C 1.52994 * 109.47033 * 180.27288 * 9 8 6 11 11 N 1.46501 * 109.47412 * 179.97438 * 10 9 8 12 12 C 1.46499 * 119.99623 * 90.00074 * 11 10 9 13 13 C 1.36937 * 120.00041 * 270.00318 * 11 10 9 14 14 H 1.07993 * 119.99834 * 23.04367 * 13 11 10 15 15 C 1.38808 * 119.99826 * 203.04225 * 13 11 10 16 16 N 1.31621 * 120.00366 * 12.93004 * 15 13 11 17 17 Si 1.86796 * 119.99983 * 192.93213 * 15 13 11 18 18 H 1.48495 * 109.47752 * 89.99994 * 17 15 13 19 19 H 1.48504 * 109.47202 * 209.99925 * 17 15 13 20 20 H 1.48497 * 109.47095 * 329.99449 * 17 15 13 21 21 C 1.39264 * 120.54931 * 359.43112 * 5 4 3 22 22 C 1.38588 * 120.32159 * 180.02562 * 2 1 3 23 23 C 1.50701 * 120.75789 * 359.95026 * 22 2 1 24 24 H 1.09009 * 109.46895 * 269.97352 * 1 2 3 25 25 H 1.08996 * 109.47486 * 29.96763 * 1 2 3 26 26 H 1.08997 * 109.47628 * 149.97623 * 1 2 3 27 27 H 1.07997 * 119.55008 * 0.05397 * 3 2 1 28 28 H 0.96995 * 119.99743 * 359.97438 * 8 6 5 29 29 H 1.08994 * 109.47345 * 300.27980 * 9 8 6 30 30 H 1.09001 * 109.46939 * 60.27661 * 9 8 6 31 31 H 1.09003 * 109.47487 * 300.00310 * 10 9 8 32 32 H 1.09007 * 109.47311 * 60.00164 * 10 9 8 33 33 H 1.08998 * 109.47416 * 95.12836 * 12 11 10 34 34 H 1.09002 * 109.46944 * 215.12242 * 12 11 10 35 35 H 1.09003 * 109.47531 * 335.12457 * 12 11 10 36 36 H 0.97000 * 120.00186 * 180.02562 * 16 15 13 37 37 H 1.08008 * 120.46928 * 180.29593 * 21 5 4 38 38 H 1.09005 * 109.46661 * 270.02825 * 23 22 2 39 39 H 1.08991 * 109.46893 * 30.02250 * 23 22 2 40 40 H 1.08998 * 109.47135 * 150.02932 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5216 1.2095 0.0050 5 6 4.2295 0.0864 -0.0011 6 6 5.7096 0.1510 -0.0016 7 8 6.3624 -0.8740 -0.0022 8 7 6.3321 1.3464 -0.0015 9 6 7.7957 1.4102 0.0041 10 6 8.2424 2.8734 0.0099 11 7 9.7060 2.9373 0.0161 12 6 10.4429 2.9726 -1.2496 13 6 10.3852 2.9639 1.2049 14 1 9.9225 2.5749 2.0998 15 6 11.6682 3.4907 1.2595 16 7 12.1364 4.1896 0.2472 17 14 12.7305 3.2077 2.7697 18 1 13.5178 1.9608 2.5948 19 1 13.6553 4.3561 2.9467 20 1 11.8631 3.0815 3.9684 21 6 3.5922 -1.1519 -0.0011 22 6 2.2066 -1.1963 -0.0005 23 6 1.4778 -2.5154 0.0000 24 1 -0.3633 -0.0005 1.0278 25 1 -0.3634 0.8902 -0.5133 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6648 2.1305 0.0009 28 1 5.8110 2.1645 -0.0014 29 1 8.1778 0.9101 0.8940 30 1 8.1843 0.9152 -0.8859 31 1 7.8603 3.3736 -0.8801 32 1 7.8538 3.3685 0.8999 33 1 10.6604 4.0073 -1.5147 34 1 11.3770 2.4213 -1.1416 35 1 9.8398 2.5156 -2.0341 36 1 13.0332 4.5574 0.2853 37 1 4.1694 -2.0648 -0.0013 38 1 1.3024 -2.8331 1.0279 39 1 0.5230 -2.4031 -0.5134 40 1 2.0809 -3.2639 -0.5138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714553636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:35 Heat of formation + Delta-G solvation = -9.216714 kcal Electronic energy + Delta-G solvation = -20558.225141 eV Core-core repulsion = 17372.499883 eV Total energy + Delta-G solvation = -3185.725257 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.76933 -40.20693 -37.89130 -35.95259 -35.45909 -33.45275 -33.25263 -30.24710 -29.25639 -28.06337 -27.84829 -25.35751 -23.78013 -23.58904 -22.40884 -21.23281 -18.98335 -18.58922 -18.02641 -17.08311 -16.69686 -16.46761 -16.18770 -15.83710 -15.74600 -15.33349 -15.08936 -14.80278 -14.35781 -14.20448 -13.91475 -13.70511 -13.66665 -13.46223 -13.07343 -12.81697 -12.73148 -12.68633 -12.49996 -12.46340 -12.20240 -11.99107 -11.82462 -11.46282 -10.69622 -10.55089 -10.51126 -10.24087 -9.86918 -8.86311 -7.86341 -5.37314 -0.41229 0.19641 1.45244 1.47518 1.55845 1.63851 2.00532 2.50571 2.79278 3.10677 3.27317 3.63896 3.74590 3.81940 3.87411 3.90768 4.17436 4.20618 4.28028 4.54224 4.61753 4.64593 4.70478 4.76774 4.80264 4.90388 4.99784 5.00467 5.06951 5.13632 5.22691 5.27147 5.37633 5.41203 5.60377 5.67654 5.69607 6.29089 6.37279 6.78816 7.09111 7.11580 7.80464 8.23983 9.16957 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036355 B = 0.002931 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.007419 B = 9550.037056 C = 9701.249570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.109 4.109 3 C 0.094 3.906 4 N -0.477 5.477 5 C 0.051 3.949 6 C 0.561 3.439 7 O -0.578 6.578 8 N -0.694 5.694 9 C 0.113 3.887 10 C 0.148 3.852 11 N -0.616 5.616 12 C 0.173 3.827 13 C -0.269 4.269 14 H 0.069 0.931 15 C -0.051 4.051 16 N -0.936 5.936 17 Si 0.970 3.030 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.268 1.268 21 C -0.120 4.120 22 C -0.056 4.056 23 C -0.117 4.117 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.193 0.807 28 H 0.418 0.582 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.013 0.987 34 H 0.015 0.985 35 H 0.031 0.969 36 H 0.250 0.750 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.388 -8.980 -1.622 29.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.111 4.111 3 C -0.067 4.067 4 N -0.188 5.188 5 C -0.085 4.085 6 C 0.347 3.653 7 O -0.458 6.458 8 N -0.344 5.344 9 C -0.013 4.013 10 C 0.021 3.979 11 N -0.339 5.339 12 C 0.028 3.972 13 C -0.399 4.399 14 H 0.087 0.913 15 C -0.246 4.246 16 N -0.582 5.582 17 Si 0.798 3.202 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.193 1.193 21 C -0.142 4.142 22 C -0.064 4.064 23 C -0.173 4.173 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.209 0.791 28 H 0.256 0.744 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.031 0.969 34 H 0.034 0.966 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.157 0.843 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -27.225 -8.796 -1.646 28.658 hybrid contribution 0.847 -0.417 0.636 1.138 sum -26.378 -9.213 -1.010 27.959 Atomic orbital electron populations 1.20946 0.86860 1.05023 1.04146 1.21468 0.99796 0.92660 0.97194 1.23316 0.88397 0.99612 0.95351 1.67479 1.10244 1.29845 1.11252 1.20797 0.92662 0.90970 1.04075 1.18408 0.87144 0.83567 0.76196 1.90741 1.67222 1.35389 1.52474 1.45754 1.07606 1.08766 1.72318 1.21984 0.78219 1.00664 1.00442 1.20914 0.83841 0.92150 1.00990 1.44024 1.00813 1.85963 1.03091 1.20613 0.93481 0.97985 0.85082 1.19507 0.98384 1.33411 0.88630 0.91283 1.25809 1.00268 0.97927 1.00586 1.70225 1.17285 1.37630 1.33071 0.85220 0.78604 0.76800 0.79538 1.21442 1.21703 1.19308 1.22097 0.95660 0.98165 0.98231 1.20583 0.92106 0.97919 0.95784 1.20979 1.00973 0.91173 1.04176 0.89118 0.89302 0.89356 0.79057 0.74450 0.93780 0.93190 0.91777 0.92408 0.96913 0.96600 0.95084 0.94076 0.84334 0.89142 0.88241 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 9.65 71.23 0.69 0.14 16 2 C -0.11 -1.46 5.91 -19.70 -0.12 -1.57 16 3 C 0.09 1.57 10.86 84.83 0.92 2.49 16 4 N -0.48 -11.69 9.54 -184.92 -1.76 -13.45 16 5 C 0.05 1.45 6.75 41.89 0.28 1.74 16 6 C 0.56 19.84 7.81 86.88 0.68 20.52 16 7 O -0.58 -24.34 16.32 -3.76 -0.06 -24.40 16 8 N -0.69 -23.39 5.55 -465.67 -2.58 -25.98 16 9 C 0.11 4.49 6.00 86.38 0.52 5.00 16 10 C 0.15 6.11 5.76 86.38 0.50 6.61 16 11 N -0.62 -31.96 2.92 -726.94 -2.12 -34.08 16 12 C 0.17 8.86 8.98 127.77 1.15 10.01 16 13 C -0.27 -15.26 9.65 84.03 0.81 -14.45 16 14 H 0.07 3.83 7.86 -2.91 -0.02 3.81 16 15 C -0.05 -2.90 5.10 84.86 0.43 -2.47 16 16 N -0.94 -56.36 10.71 21.65 0.23 -56.13 16 17 Si 0.97 46.28 29.57 68.60 2.03 48.31 16 18 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 C -0.12 -2.88 9.34 22.61 0.21 -2.67 16 22 C -0.06 -0.91 5.91 -19.68 -0.12 -1.03 16 23 C -0.12 -1.04 9.67 71.24 0.69 -0.35 16 24 H 0.09 0.29 8.14 -2.38 -0.02 0.28 16 25 H 0.09 0.22 8.09 -2.39 -0.02 0.20 16 26 H 0.09 0.23 6.06 -2.39 -0.01 0.21 16 27 H 0.19 1.85 8.06 -2.91 -0.02 1.82 16 28 H 0.42 12.19 7.80 -92.71 -0.72 11.47 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.06 2.38 8.07 -2.39 -0.02 2.36 16 32 H 0.06 2.34 8.04 -2.38 -0.02 2.32 16 33 H 0.01 0.69 7.34 -2.39 -0.02 0.68 16 34 H 0.02 0.85 7.34 -2.39 -0.02 0.84 16 35 H 0.03 1.35 8.03 -2.39 -0.02 1.33 16 36 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 37 H 0.14 3.43 7.64 -2.91 -0.02 3.40 16 38 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.10 0.43 6.07 -2.39 -0.01 0.42 16 40 H 0.07 0.69 8.10 -2.39 -0.02 0.67 16 Total: -1.00 -73.72 336.72 2.69 -71.03 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.32 Total: 10.74 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: 6.64 Total: 23.96 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -6.24 Total: -129.64 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.06 Total: -24.40 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -73.72 2.69 -71.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714553636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.813 kcal (2) G-P(sol) polarization free energy of solvation -73.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds