Wall clock time and date at job start Mon Mar 30 2020 01:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38356 * 120.35455 * 2 1 4 4 N 1.31924 * 121.07943 * 180.02562 * 3 2 1 5 5 C 1.31696 * 121.88298 * 359.72674 * 4 3 2 6 6 C 1.39521 * 120.56439 * 0.53645 * 5 4 3 7 7 C 1.47839 * 120.55934 * 179.75076 * 6 5 4 8 8 O 1.21547 * 120.00015 * 156.25845 * 7 6 5 9 9 N 1.34780 * 119.99821 * 336.53028 * 7 6 5 10 10 C 1.46500 * 120.00009 * 354.20259 * 9 7 6 11 11 C 1.46500 * 120.00189 * 174.19894 * 9 7 6 12 12 H 1.09004 * 109.46533 * 0.02562 * 11 9 7 13 13 C 1.52993 * 109.47314 * 120.00133 * 11 9 7 14 14 C 1.53004 * 109.47023 * 240.00358 * 11 9 7 15 15 N 1.46497 * 109.47267 * 55.00147 * 14 11 9 16 16 C 1.36939 * 120.00070 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99532 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99967 * 180.02562 * 16 15 14 19 19 N 1.31616 * 119.99762 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99999 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46932 * 90.00636 * 20 18 16 22 22 H 1.48501 * 109.46984 * 210.00385 * 20 18 16 23 23 H 1.48495 * 109.47366 * 330.00437 * 20 18 16 24 24 C 1.38364 * 120.34773 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.46666 * 269.97861 * 1 2 3 26 26 H 1.09001 * 109.46895 * 29.97368 * 1 2 3 27 27 H 1.08992 * 109.47554 * 149.97879 * 1 2 3 28 28 H 1.08003 * 119.45474 * 0.04537 * 3 2 1 29 29 H 1.07992 * 119.71572 * 180.26693 * 5 4 3 30 30 H 1.08996 * 109.47520 * 95.76313 * 10 9 7 31 31 H 1.09001 * 109.46982 * 215.76682 * 10 9 7 32 32 H 1.09006 * 109.47299 * 335.76496 * 10 9 7 33 33 H 1.08998 * 109.47200 * 180.02562 * 13 11 9 34 34 H 1.09006 * 109.46839 * 300.00213 * 13 11 9 35 35 H 1.08999 * 109.47123 * 60.00072 * 13 11 9 36 36 H 1.09000 * 109.46637 * 174.99685 * 14 11 9 37 37 H 1.08992 * 109.46651 * 294.99487 * 14 11 9 38 38 H 0.97005 * 119.99832 * 359.97438 * 15 14 11 39 39 H 0.97005 * 119.99921 * 179.97438 * 19 18 16 40 40 H 1.08006 * 120.85099 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.1939 0.0000 4 7 3.5253 1.2106 -0.0005 5 6 4.2350 0.1012 0.0043 6 6 3.6053 -1.1438 -0.0011 7 6 4.4022 -2.3891 -0.0012 8 8 3.9166 -3.4214 0.4183 9 7 5.6689 -2.3785 -0.4614 10 6 6.2142 -1.1665 -1.0780 11 6 6.5007 -3.5788 -0.3450 12 1 5.9283 -4.3722 0.1358 13 6 6.9339 -4.0363 -1.7392 14 6 7.7392 -3.2616 0.4955 15 7 7.3243 -2.7109 1.7880 16 6 8.2673 -2.3498 2.7130 17 1 9.3170 -2.4714 2.4896 18 6 7.8741 -1.8285 3.9379 19 7 8.7805 -1.4819 4.8271 20 14 6.0586 -1.6188 4.3243 21 1 5.5431 -2.8551 4.9656 22 1 5.8786 -0.4701 5.2480 23 1 5.3109 -1.3647 3.0668 24 6 2.2060 -1.1940 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5141 28 1 1.6630 2.1274 0.0007 29 1 5.3135 0.1557 0.0081 30 1 6.7688 -0.5973 -0.3320 31 1 6.8816 -1.4429 -1.8943 32 1 5.3977 -0.5576 -1.4664 33 1 7.5524 -4.9296 -1.6526 34 1 6.0515 -4.2623 -2.3379 35 1 7.5061 -3.2431 -2.2204 36 1 8.3124 -4.1746 0.6567 37 1 8.3569 -2.5325 -0.0288 38 1 6.3815 -2.6013 1.9884 39 1 8.5058 -1.1173 5.6830 40 1 1.6857 -2.1405 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715331089.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:48 Heat of formation + Delta-G solvation = 33.414096 kcal Electronic energy + Delta-G solvation = -22121.483039 eV Core-core repulsion = 18937.606392 eV Total energy + Delta-G solvation = -3183.876647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91686 -39.26694 -36.62805 -34.49152 -33.72181 -32.76969 -31.35432 -30.40870 -27.79814 -26.82792 -25.97794 -24.70624 -22.76458 -22.15841 -20.97994 -19.30224 -17.59419 -17.53700 -17.08483 -16.37330 -16.00376 -15.22587 -14.68738 -14.40435 -14.12524 -14.06028 -13.74026 -13.34051 -13.02944 -12.95839 -12.86429 -12.76793 -12.63125 -12.45226 -12.25164 -12.07537 -11.89454 -11.47728 -10.95880 -10.84020 -10.58101 -10.12952 -10.09325 -9.88314 -9.59332 -9.42461 -9.01547 -8.90342 -8.50143 -7.23271 -5.77139 -3.12098 0.61364 1.07695 2.86260 3.02625 3.39851 3.45392 3.48836 3.70122 4.22268 4.48628 4.58160 4.60692 4.76418 4.78966 4.88759 5.01779 5.12517 5.24226 5.32399 5.37145 5.43695 5.49722 5.54061 5.55251 5.69853 5.73389 5.79935 5.90786 5.93311 5.96885 6.03226 6.19803 6.32375 6.46574 6.58404 6.78533 7.44285 7.76837 7.98588 8.21923 8.42192 9.21313 9.94374 10.14126 11.41113 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.006955 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.874229 B = 4024.794897 C = 5097.913445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.152 4.152 3 C 0.115 3.885 4 N -0.483 5.483 5 C 0.114 3.886 6 C -0.178 4.178 7 C 0.563 3.437 8 O -0.537 6.537 9 N -0.592 5.592 10 C 0.060 3.940 11 C 0.122 3.878 12 H 0.102 0.898 13 C -0.155 4.155 14 C 0.148 3.852 15 N -0.753 5.753 16 C -0.244 4.244 17 H 0.091 0.909 18 C 0.009 3.991 19 N -0.932 5.932 20 Si 0.880 3.120 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.280 1.280 24 C -0.023 4.023 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.158 0.842 29 H 0.182 0.818 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.039 0.961 37 H 0.031 0.969 38 H 0.362 0.638 39 H 0.259 0.741 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.419 2.549 -16.224 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.154 4.154 3 C -0.042 4.042 4 N -0.191 5.191 5 C -0.043 4.043 6 C -0.183 4.183 7 C 0.351 3.649 8 O -0.415 6.415 9 N -0.324 5.324 10 C -0.082 4.082 11 C 0.019 3.981 12 H 0.120 0.880 13 C -0.214 4.214 14 C 0.020 3.980 15 N -0.399 5.399 16 C -0.374 4.374 17 H 0.109 0.891 18 C -0.187 4.187 19 N -0.580 5.580 20 Si 0.710 3.290 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.049 4.049 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.175 0.825 29 H 0.198 0.802 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.195 0.805 39 H 0.069 0.931 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.980 2.837 -15.901 20.721 hybrid contribution -1.589 -0.515 0.546 1.757 sum -14.569 2.322 -15.355 21.294 Atomic orbital electron populations 1.20706 0.89727 1.03165 1.02850 1.20898 0.97883 0.93800 1.02769 1.22921 0.90198 0.97543 0.93510 1.67813 1.07868 1.30944 1.12479 1.24059 1.01977 0.86635 0.91590 1.21015 0.95088 0.95241 1.06956 1.18056 0.81467 0.87682 0.77690 1.90756 1.70630 1.32806 1.47315 1.47611 1.11832 1.13992 1.58928 1.22398 0.99827 0.87384 0.98625 1.21532 0.92840 0.87149 0.96551 0.87976 1.22046 1.01507 1.01788 0.96015 1.21000 0.93083 0.97332 0.86581 1.42661 1.05293 1.77632 1.14284 1.19036 0.89912 1.34665 0.93738 0.89109 1.24610 0.96564 1.01063 0.96454 1.69694 1.31591 1.49079 1.07670 0.86625 0.86849 0.77679 0.77829 1.21029 1.21681 1.20625 1.21579 0.92359 0.98889 0.92107 0.90725 0.91028 0.91180 0.82460 0.80172 0.90626 0.90604 0.90383 0.91017 0.92501 0.92084 0.94290 0.95143 0.80522 0.93055 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.03 36.00 0.36 -0.44 16 2 C -0.15 -1.70 5.89 -104.53 -0.62 -2.31 16 3 C 0.12 1.36 10.85 -17.47 -0.19 1.17 16 4 N -0.48 -6.99 10.35 -12.91 -0.13 -7.12 16 5 C 0.11 1.73 8.74 -17.13 -0.15 1.58 16 6 C -0.18 -2.80 5.52 -104.82 -0.58 -3.37 16 7 C 0.56 9.98 7.22 -12.33 -0.09 9.89 16 8 O -0.54 -11.04 15.99 5.32 0.09 -10.95 16 9 N -0.59 -9.36 2.24 -175.05 -0.39 -9.75 16 10 C 0.06 0.76 7.88 59.85 0.47 1.23 16 11 C 0.12 1.95 2.80 -67.93 -0.19 1.76 16 12 H 0.10 1.84 6.91 -51.93 -0.36 1.48 16 13 C -0.16 -1.82 9.16 37.15 0.34 -1.48 16 14 C 0.15 2.81 5.56 -4.04 -0.02 2.78 16 15 N -0.75 -18.31 5.24 -59.91 -0.31 -18.63 16 16 C -0.24 -6.99 10.47 -15.06 -0.16 -7.14 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 18 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 19 N -0.93 -29.76 13.97 55.49 0.78 -28.98 16 20 Si 0.88 23.60 27.74 -169.99 -4.71 18.88 16 21 H -0.28 -7.69 7.11 56.52 0.40 -7.29 16 22 H -0.29 -7.80 7.11 56.52 0.40 -7.39 16 23 H -0.28 -7.30 6.52 56.52 0.37 -6.93 16 24 C -0.02 -0.31 9.40 -38.87 -0.37 -0.68 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 27 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 29 H 0.18 2.62 4.37 -52.49 -0.23 2.39 16 30 H 0.08 1.05 7.14 -51.93 -0.37 0.68 16 31 H 0.08 0.77 6.46 -51.93 -0.34 0.44 16 32 H 0.08 0.87 5.12 -51.93 -0.27 0.60 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.63 6.70 -51.93 -0.35 0.29 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.03 0.56 7.84 -51.93 -0.41 0.15 16 38 H 0.36 9.09 4.93 -40.82 -0.20 8.89 16 39 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 40 H 0.14 1.81 7.90 -52.48 -0.41 1.40 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -35.42 325.82 -6.54 -41.96 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.48 Total: 6.52 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.28 Total: 3.16 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -0.07 Total: -64.48 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -4.71 Total: 18.88 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.42 -6.54 -41.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715331089.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.378 kcal (2) G-P(sol) polarization free energy of solvation -35.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds