Wall clock time and date at job start Mon Mar 30 2020 01:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38356 * 120.35455 * 2 1 4 4 N 1.31924 * 121.07943 * 180.02562 * 3 2 1 5 5 C 1.31696 * 121.88298 * 359.72674 * 4 3 2 6 6 C 1.39521 * 120.56439 * 0.53645 * 5 4 3 7 7 C 1.47839 * 120.55934 * 179.75076 * 6 5 4 8 8 O 1.21547 * 120.00015 * 156.25845 * 7 6 5 9 9 N 1.34780 * 119.99821 * 336.53028 * 7 6 5 10 10 C 1.46500 * 120.00009 * 354.20259 * 9 7 6 11 11 C 1.46500 * 120.00189 * 174.19894 * 9 7 6 12 12 H 1.09004 * 109.46533 * 0.02562 * 11 9 7 13 13 C 1.52993 * 109.47314 * 120.00133 * 11 9 7 14 14 C 1.53004 * 109.47023 * 240.00358 * 11 9 7 15 15 N 1.46497 * 109.47267 * 55.00147 * 14 11 9 16 16 C 1.36939 * 120.00070 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99532 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99967 * 180.02562 * 16 15 14 19 19 N 1.31616 * 119.99762 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99999 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46932 * 90.00636 * 20 18 16 22 22 H 1.48501 * 109.46984 * 210.00385 * 20 18 16 23 23 H 1.48495 * 109.47366 * 330.00437 * 20 18 16 24 24 C 1.38364 * 120.34773 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.46666 * 269.97861 * 1 2 3 26 26 H 1.09001 * 109.46895 * 29.97368 * 1 2 3 27 27 H 1.08992 * 109.47554 * 149.97879 * 1 2 3 28 28 H 1.08003 * 119.45474 * 0.04537 * 3 2 1 29 29 H 1.07992 * 119.71572 * 180.26693 * 5 4 3 30 30 H 1.08996 * 109.47520 * 95.76313 * 10 9 7 31 31 H 1.09001 * 109.46982 * 215.76682 * 10 9 7 32 32 H 1.09006 * 109.47299 * 335.76496 * 10 9 7 33 33 H 1.08998 * 109.47200 * 180.02562 * 13 11 9 34 34 H 1.09006 * 109.46839 * 300.00213 * 13 11 9 35 35 H 1.08999 * 109.47123 * 60.00072 * 13 11 9 36 36 H 1.09000 * 109.46637 * 174.99685 * 14 11 9 37 37 H 1.08992 * 109.46651 * 294.99487 * 14 11 9 38 38 H 0.97005 * 119.99832 * 359.97438 * 15 14 11 39 39 H 0.97005 * 119.99921 * 179.97438 * 19 18 16 40 40 H 1.08006 * 120.85099 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.1939 0.0000 4 7 3.5253 1.2106 -0.0005 5 6 4.2350 0.1012 0.0043 6 6 3.6053 -1.1438 -0.0011 7 6 4.4022 -2.3891 -0.0012 8 8 3.9166 -3.4214 0.4183 9 7 5.6689 -2.3785 -0.4614 10 6 6.2142 -1.1665 -1.0780 11 6 6.5007 -3.5788 -0.3450 12 1 5.9283 -4.3722 0.1358 13 6 6.9339 -4.0363 -1.7392 14 6 7.7392 -3.2616 0.4955 15 7 7.3243 -2.7109 1.7880 16 6 8.2673 -2.3498 2.7130 17 1 9.3170 -2.4714 2.4896 18 6 7.8741 -1.8285 3.9379 19 7 8.7805 -1.4819 4.8271 20 14 6.0586 -1.6188 4.3243 21 1 5.5431 -2.8551 4.9656 22 1 5.8786 -0.4701 5.2480 23 1 5.3109 -1.3647 3.0668 24 6 2.2060 -1.1940 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5141 28 1 1.6630 2.1274 0.0007 29 1 5.3135 0.1557 0.0081 30 1 6.7688 -0.5973 -0.3320 31 1 6.8816 -1.4429 -1.8943 32 1 5.3977 -0.5576 -1.4664 33 1 7.5524 -4.9296 -1.6526 34 1 6.0515 -4.2623 -2.3379 35 1 7.5061 -3.2431 -2.2204 36 1 8.3124 -4.1746 0.6567 37 1 8.3569 -2.5325 -0.0288 38 1 6.3815 -2.6013 1.9884 39 1 8.5058 -1.1173 5.6830 40 1 1.6857 -2.1405 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715331089.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:48 Heat of formation + Delta-G solvation = 8.866019 kcal Electronic energy + Delta-G solvation = -22122.547524 eV Core-core repulsion = 18937.606392 eV Total energy + Delta-G solvation = -3184.941131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.04125 -40.43381 -38.06032 -36.15509 -34.80139 -34.14100 -33.06615 -31.80884 -28.74518 -27.79979 -27.61579 -25.82993 -24.11163 -23.71078 -22.28024 -20.65319 -19.61849 -18.68652 -18.10254 -17.53361 -17.20628 -16.71154 -16.47526 -15.91613 -15.33156 -15.20348 -14.87785 -14.81558 -14.33720 -14.22241 -14.12226 -13.88679 -13.77036 -13.69113 -13.48360 -13.11188 -13.01391 -12.91441 -12.56253 -12.48150 -12.29870 -11.90483 -11.77857 -11.33111 -11.07567 -10.93948 -10.52271 -9.97508 -9.75752 -9.35134 -8.10300 -5.40668 -0.44161 0.07620 1.23728 1.27780 1.31673 1.62817 1.83853 2.36665 2.65216 3.19241 3.22527 3.44370 3.56387 3.73617 3.75146 3.85432 3.92835 4.12079 4.13063 4.22535 4.32745 4.47317 4.54975 4.70715 4.70883 4.78566 4.80151 4.86683 4.89216 4.92682 5.09149 5.12683 5.17880 5.28976 5.48839 5.55569 5.70959 6.14926 6.20632 6.75493 6.93577 7.00567 7.78186 7.95043 9.11378 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.006955 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.874229 B = 4024.794897 C = 5097.913445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.139 4.139 3 C 0.115 3.885 4 N -0.502 5.502 5 C 0.103 3.897 6 C -0.199 4.199 7 C 0.554 3.446 8 O -0.578 6.578 9 N -0.592 5.592 10 C 0.058 3.942 11 C 0.126 3.874 12 H 0.078 0.922 13 C -0.144 4.144 14 C 0.144 3.856 15 N -0.758 5.758 16 C -0.223 4.223 17 H 0.070 0.930 18 C -0.050 4.050 19 N -0.976 5.976 20 Si 0.938 3.062 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.273 1.273 24 C -0.036 4.036 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.195 0.805 29 H 0.179 0.821 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.358 0.642 39 H 0.258 0.742 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.289 3.415 -18.198 24.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.141 4.141 3 C -0.041 4.041 4 N -0.210 5.210 5 C -0.054 4.054 6 C -0.204 4.204 7 C 0.344 3.656 8 O -0.459 6.459 9 N -0.322 5.322 10 C -0.083 4.083 11 C 0.023 3.977 12 H 0.096 0.904 13 C -0.202 4.202 14 C 0.017 3.983 15 N -0.403 5.403 16 C -0.354 4.354 17 H 0.088 0.912 18 C -0.242 4.242 19 N -0.627 5.627 20 Si 0.768 3.232 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.199 1.199 24 C -0.062 4.062 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.096 0.904 28 H 0.212 0.788 29 H 0.196 0.804 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.190 0.810 39 H 0.067 0.933 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.837 3.701 -17.941 23.574 hybrid contribution -1.003 -0.778 1.081 1.667 sum -15.840 2.923 -16.860 23.318 Atomic orbital electron populations 1.20818 0.86741 1.04901 1.03797 1.21291 0.99854 0.92576 1.00390 1.23588 0.89488 0.99282 0.91784 1.67842 1.09342 1.30609 1.13184 1.24018 1.02130 0.86712 0.92519 1.20980 0.95929 0.94464 1.09074 1.18489 0.82109 0.87931 0.77116 1.90717 1.71651 1.34266 1.49311 1.47755 1.11370 1.14824 1.58269 1.22555 1.00701 0.86290 0.98794 1.21451 0.91051 0.86766 0.98431 0.90402 1.21978 1.02253 1.02907 0.93042 1.21251 0.94898 0.97370 0.84771 1.42746 1.04318 1.77678 1.15568 1.19081 0.89805 1.32388 0.94160 0.91192 1.25202 0.99906 1.02255 0.96826 1.69820 1.33362 1.51235 1.08260 0.85678 0.82732 0.77184 0.77641 1.21516 1.21584 1.19894 1.21797 0.91815 1.00143 0.92429 0.89948 0.88473 0.90372 0.78828 0.80428 0.92111 0.87731 0.88927 0.89662 0.91730 0.90136 0.93929 0.93556 0.80960 0.93286 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.03 71.23 0.71 -0.49 16 2 C -0.14 -2.76 5.89 -19.81 -0.12 -2.87 16 3 C 0.12 2.38 10.85 84.71 0.92 3.30 16 4 N -0.50 -13.66 10.35 -194.76 -2.01 -15.68 16 5 C 0.10 3.02 8.74 85.02 0.74 3.76 16 6 C -0.20 -6.17 5.52 -19.99 -0.11 -6.28 16 7 C 0.55 19.65 7.22 86.78 0.63 20.28 16 8 O -0.58 -24.19 15.99 -3.86 -0.06 -24.25 16 9 N -0.59 -18.23 2.24 -826.01 -1.85 -20.08 16 10 C 0.06 1.37 7.88 127.77 1.01 2.38 16 11 C 0.13 3.89 2.80 44.99 0.13 4.02 16 12 H 0.08 2.81 6.91 -2.39 -0.02 2.80 16 13 C -0.14 -2.99 9.16 71.98 0.66 -2.33 16 14 C 0.14 5.30 5.56 86.38 0.48 5.78 16 15 N -0.76 -36.77 5.24 -343.46 -1.80 -38.57 16 16 C -0.22 -12.91 10.47 84.03 0.88 -12.03 16 17 H 0.07 4.30 8.06 -2.91 -0.02 4.27 16 18 C -0.05 -3.02 5.50 84.86 0.47 -2.56 16 19 N -0.98 -63.45 13.97 21.65 0.30 -63.15 16 20 Si 0.94 49.66 27.74 68.60 1.90 51.56 16 21 H -0.29 -15.35 7.11 99.48 0.71 -14.65 16 22 H -0.29 -15.16 7.11 99.48 0.71 -14.45 16 23 H -0.27 -13.97 6.52 99.48 0.65 -13.32 16 24 C -0.04 -0.93 9.40 22.73 0.21 -0.71 16 25 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.10 0.65 8.09 -2.39 -0.02 0.63 16 27 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 28 H 0.19 2.44 8.06 -2.91 -0.02 2.41 16 29 H 0.18 5.12 4.37 -2.91 -0.01 5.11 16 30 H 0.06 1.65 7.14 -2.39 -0.02 1.63 16 31 H 0.10 1.83 6.46 -2.39 -0.02 1.81 16 32 H 0.09 1.95 5.12 -2.38 -0.01 1.93 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.08 1.38 6.70 -2.39 -0.02 1.36 16 36 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 1.60 7.84 -2.39 -0.02 1.58 16 38 H 0.36 17.97 4.93 -92.70 -0.46 17.51 16 39 H 0.26 16.07 8.31 -92.70 -0.77 15.30 16 40 H 0.15 3.61 7.90 -2.91 -0.02 3.59 16 Total: -1.00 -78.00 325.82 3.62 -74.38 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.54 Total: 23.53 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 6.61 Total: 12.26 kcal Atomic # 7 Polarization: -132.11 SS G_CDS: -5.37 Total: -137.48 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.06 Total: -24.25 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 1.90 Total: 51.56 kcal Total: -78.00 3.62 -74.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715331089.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.244 kcal (2) G-P(sol) polarization free energy of solvation -78.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds