Wall clock time and date at job start Mon Mar 30 2020 01:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38407 * 120.85419 * 2 1 4 4 C 1.38310 * 119.30596 * 179.97438 * 3 2 1 5 5 N 1.31960 * 121.07919 * 359.97438 * 4 3 2 6 6 C 1.31663 * 121.88316 * 0.02562 * 5 4 3 7 7 C 1.39563 * 120.56110 * 359.73535 * 6 5 4 8 8 C 1.47846 * 120.55703 * 180.29062 * 7 6 5 9 9 O 1.21558 * 120.00069 * 129.90452 * 8 7 6 10 10 N 1.34774 * 120.00050 * 309.89579 * 8 7 6 11 11 C 1.46510 * 119.99969 * 5.10276 * 10 8 7 12 12 C 1.46494 * 120.00323 * 185.10428 * 10 8 7 13 13 C 1.52999 * 109.47612 * 89.99959 * 12 10 8 14 14 N 1.46494 * 109.47612 * 180.02562 * 13 12 10 15 15 C 1.46501 * 120.00340 * 270.00304 * 14 13 12 16 16 C 1.36942 * 119.99668 * 89.99715 * 14 13 12 17 17 H 1.08003 * 120.00137 * 23.99863 * 16 14 13 18 18 C 1.38810 * 119.99916 * 203.99305 * 16 14 13 19 19 N 1.31616 * 120.00325 * 9.72775 * 18 16 14 20 20 Si 1.86808 * 119.99860 * 189.72768 * 18 16 14 21 21 H 1.48499 * 109.46960 * 60.00170 * 20 18 16 22 22 H 1.48505 * 109.46891 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47033 * 299.99698 * 20 18 16 24 24 H 1.09004 * 109.47093 * 87.51878 * 1 2 3 25 25 H 1.09001 * 109.47512 * 327.51515 * 1 2 3 26 26 H 1.08999 * 109.47178 * 207.51415 * 1 2 3 27 27 H 1.07996 * 120.34892 * 359.95428 * 3 2 1 28 28 H 1.07997 * 119.46189 * 179.97438 * 4 3 2 29 29 H 1.07996 * 119.71933 * 180.02562 * 6 5 4 30 30 H 1.09004 * 109.46978 * 84.44135 * 11 10 8 31 31 H 1.08999 * 109.46848 * 204.43726 * 11 10 8 32 32 H 1.08999 * 109.46804 * 324.44016 * 11 10 8 33 33 H 1.09003 * 109.47443 * 210.00137 * 12 10 8 34 34 H 1.09002 * 109.47197 * 330.00168 * 12 10 8 35 35 H 1.09003 * 109.46861 * 300.00534 * 13 12 10 36 36 H 1.09002 * 109.46669 * 59.99885 * 13 12 10 37 37 H 1.09003 * 109.47183 * 93.75043 * 15 14 13 38 38 H 1.08994 * 109.46946 * 213.75183 * 15 14 13 39 39 H 1.09002 * 109.46739 * 333.75279 * 15 14 13 40 40 H 0.97002 * 120.00498 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2167 1.1882 0.0000 4 6 3.5993 1.1508 0.0005 5 7 4.2497 0.0027 0.0016 6 6 3.6198 -1.1535 0.0016 7 6 2.2250 -1.2016 0.0061 8 6 1.5177 -2.4999 0.0126 9 8 0.6364 -2.7078 0.8236 10 7 1.8499 -3.4527 -0.8807 11 6 2.9847 -3.2462 -1.7841 12 6 1.0763 -4.6949 -0.9486 13 6 -0.0747 -4.5255 -1.9422 14 7 -0.8487 -5.7675 -2.0096 15 6 -0.4879 -6.8037 -2.9803 16 6 -1.9093 -5.9599 -1.1650 17 1 -2.4210 -5.1098 -0.7383 18 6 -2.3270 -7.2474 -0.8576 19 7 -1.5952 -8.2804 -1.2178 20 14 -3.9279 -7.5142 0.0674 21 1 -5.0540 -6.9499 -0.7192 22 1 -4.1462 -8.9691 0.2698 23 1 -3.8564 -6.8357 1.3864 24 1 -0.3633 0.0445 -1.0267 25 1 -0.3634 0.8669 0.5519 26 1 -0.3633 -0.9114 0.4747 27 1 1.6965 2.1346 -0.0007 28 1 4.1557 2.0764 0.0001 29 1 4.1872 -2.0724 0.0029 30 1 3.9075 -3.5326 -1.2795 31 1 2.8541 -3.8576 -2.6770 32 1 3.0367 -2.1951 -2.0677 33 1 1.7232 -5.5084 -1.2773 34 1 0.6738 -4.9266 0.0376 35 1 -0.7216 -3.7120 -1.6135 36 1 0.3278 -4.2938 -2.9283 37 1 0.1778 -7.5270 -2.5091 38 1 -1.3900 -7.3099 -3.3235 39 1 0.0172 -6.3451 -3.8304 40 1 -1.8872 -9.1802 -1.0033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715516594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:02 Heat of formation + Delta-G solvation = 31.329187 kcal Electronic energy + Delta-G solvation = -21635.024727 eV Core-core repulsion = 18451.057672 eV Total energy + Delta-G solvation = -3183.967055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.85422 -38.97429 -36.14492 -34.98313 -33.93760 -32.03416 -31.12559 -28.71621 -27.91331 -26.56232 -25.84719 -24.60795 -23.19740 -22.23112 -20.59388 -19.33183 -17.40072 -16.89855 -16.62227 -16.49926 -15.86997 -15.24128 -14.60546 -14.44634 -14.19753 -13.88415 -13.50003 -13.31857 -13.00965 -12.95640 -12.82490 -12.54373 -12.45140 -12.24857 -11.91714 -11.82645 -11.31047 -10.86343 -10.80853 -10.51117 -10.18442 -10.08186 -9.94168 -9.77876 -9.64686 -9.43613 -9.24301 -8.61718 -8.39368 -6.72983 -5.71021 -3.18037 0.65216 1.00984 2.78838 3.16834 3.43629 3.47125 3.49521 3.60112 4.16722 4.45422 4.52221 4.54149 4.59966 4.87157 5.13283 5.20959 5.30793 5.39279 5.45639 5.49218 5.54776 5.65106 5.68652 5.70080 5.79820 5.98540 6.20874 6.22579 6.27529 6.42142 6.57366 6.72742 6.74538 7.01762 7.37411 7.58000 7.68522 7.71936 7.85279 8.32463 8.43395 9.26411 9.87602 10.36140 11.34359 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027788 B = 0.004204 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.403264 B = 6658.717265 C = 7241.170800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.009 3.991 3 C -0.181 4.181 4 C 0.112 3.888 5 N -0.492 5.492 6 C 0.132 3.868 7 C -0.176 4.176 8 C 0.557 3.443 9 O -0.521 6.521 10 N -0.604 5.604 11 C 0.075 3.925 12 C 0.091 3.909 13 C 0.144 3.856 14 N -0.598 5.598 15 C 0.163 3.837 16 C -0.254 4.254 17 H 0.069 0.931 18 C 0.004 3.996 19 N -0.911 5.911 20 Si 0.906 3.094 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.282 1.282 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.139 0.861 28 H 0.158 0.842 29 H 0.161 0.839 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.035 0.965 37 H 0.028 0.972 38 H 0.046 0.954 39 H -0.005 1.005 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.790 16.748 -1.493 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.000 4.000 3 C -0.201 4.201 4 C -0.044 4.044 5 N -0.201 5.201 6 C -0.026 4.026 7 C -0.181 4.181 8 C 0.343 3.657 9 O -0.398 6.398 10 N -0.337 5.337 11 C -0.068 4.068 12 C -0.033 4.033 13 C 0.016 3.984 14 N -0.321 5.321 15 C 0.019 3.981 16 C -0.383 4.383 17 H 0.086 0.914 18 C -0.194 4.194 19 N -0.556 5.556 20 Si 0.736 3.264 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.208 1.208 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.118 0.882 27 H 0.157 0.843 28 H 0.175 0.825 29 H 0.178 0.822 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.014 0.986 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.167 16.404 -1.070 19.873 hybrid contribution -1.517 -0.268 0.507 1.622 sum 9.650 16.136 -0.563 18.810 Atomic orbital electron populations 1.21139 0.89487 1.05515 1.03392 1.20402 0.97319 0.91355 0.90882 1.22018 0.95569 0.98570 1.03917 1.22891 0.91729 0.96382 0.93406 1.67705 1.40775 0.98274 1.13363 1.23064 0.90309 0.96609 0.92659 1.20984 0.95537 0.94702 1.06901 1.18082 0.83053 0.83236 0.81282 1.90798 1.31444 1.79783 1.37757 1.48036 1.31549 1.18786 1.35316 1.21925 0.88544 1.02054 0.94324 1.22722 0.93902 0.82703 1.03946 1.21112 0.91599 0.90515 0.95192 1.43941 1.32445 1.16121 1.39588 1.20827 0.98929 0.90094 0.88264 1.19204 1.05255 0.91827 1.22057 0.91354 1.25060 0.99027 0.95960 0.99385 1.70035 1.37321 0.97828 1.50377 0.86313 0.83406 0.76710 0.80019 1.21044 1.21614 1.20780 0.90248 0.90745 0.88224 0.84272 0.82471 0.82162 0.92563 0.90360 0.91697 0.91134 0.89336 0.93676 0.94646 0.95341 0.93521 0.98609 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.72 36.00 0.35 -1.29 16 2 C 0.01 0.11 5.95 -103.91 -0.62 -0.51 16 3 C -0.18 -1.71 9.81 -39.49 -0.39 -2.09 16 4 C 0.11 1.05 11.17 -17.47 -0.20 0.86 16 5 N -0.49 -5.69 10.35 -12.91 -0.13 -5.83 16 6 C 0.13 1.56 9.00 -17.13 -0.15 1.41 16 7 C -0.18 -2.38 4.87 -104.82 -0.51 -2.89 16 8 C 0.56 9.27 6.75 -12.33 -0.08 9.19 16 9 O -0.52 -10.76 14.51 5.32 0.08 -10.68 16 10 N -0.60 -9.40 2.87 -182.69 -0.52 -9.92 16 11 C 0.08 0.83 9.09 59.85 0.54 1.38 16 12 C 0.09 1.75 5.74 -4.05 -0.02 1.73 16 13 C 0.14 3.04 6.03 -4.05 -0.02 3.01 16 14 N -0.60 -15.24 2.92 -181.12 -0.53 -15.77 16 15 C 0.16 4.00 9.01 59.85 0.54 4.54 16 16 C -0.25 -7.15 9.66 -15.06 -0.15 -7.30 16 17 H 0.07 1.93 7.84 -52.48 -0.41 1.52 16 18 C 0.00 0.11 5.15 -17.43 -0.09 0.02 16 19 N -0.91 -26.64 10.60 55.49 0.59 -26.06 16 20 Si 0.91 22.39 29.56 -169.99 -5.03 17.36 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 26 H 0.10 1.51 5.61 -51.93 -0.29 1.22 16 27 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.16 1.65 6.40 -52.49 -0.34 1.31 16 30 H 0.06 0.52 7.12 -51.93 -0.37 0.15 16 31 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 32 H 0.06 0.66 6.32 -51.93 -0.33 0.33 16 33 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 34 H 0.09 2.03 7.36 -51.93 -0.38 1.65 16 35 H 0.04 1.00 8.03 -51.93 -0.42 0.58 16 36 H 0.04 0.67 7.87 -51.93 -0.41 0.26 16 37 H 0.03 0.74 7.41 -51.93 -0.38 0.36 16 38 H 0.05 1.23 7.22 -51.93 -0.38 0.86 16 39 H 0.00 -0.10 7.85 -51.93 -0.41 -0.51 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 329.93 15.07 4.97 4.97 Total: -1.00 -32.93 329.93 -7.15 -40.08 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -5.77 Total: -2.20 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -0.80 Total: 8.05 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.60 Total: -57.58 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.93 -7.15 -40.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715516594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.408 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds