Wall clock time and date at job start Mon Mar 30 2020 01:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38407 * 120.85419 * 2 1 4 4 C 1.38310 * 119.30596 * 179.97438 * 3 2 1 5 5 N 1.31960 * 121.07919 * 359.97438 * 4 3 2 6 6 C 1.31663 * 121.88316 * 0.02562 * 5 4 3 7 7 C 1.39563 * 120.56110 * 359.73535 * 6 5 4 8 8 C 1.47846 * 120.55703 * 180.29062 * 7 6 5 9 9 O 1.21558 * 120.00069 * 129.90452 * 8 7 6 10 10 N 1.34774 * 120.00050 * 309.89579 * 8 7 6 11 11 C 1.46510 * 119.99969 * 5.10276 * 10 8 7 12 12 C 1.46494 * 120.00323 * 185.10428 * 10 8 7 13 13 C 1.52999 * 109.47612 * 89.99959 * 12 10 8 14 14 N 1.46494 * 109.47612 * 180.02562 * 13 12 10 15 15 C 1.46501 * 120.00340 * 270.00304 * 14 13 12 16 16 C 1.36942 * 119.99668 * 89.99715 * 14 13 12 17 17 H 1.08003 * 120.00137 * 23.99863 * 16 14 13 18 18 C 1.38810 * 119.99916 * 203.99305 * 16 14 13 19 19 N 1.31616 * 120.00325 * 9.72775 * 18 16 14 20 20 Si 1.86808 * 119.99860 * 189.72768 * 18 16 14 21 21 H 1.48499 * 109.46960 * 60.00170 * 20 18 16 22 22 H 1.48505 * 109.46891 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47033 * 299.99698 * 20 18 16 24 24 H 1.09004 * 109.47093 * 87.51878 * 1 2 3 25 25 H 1.09001 * 109.47512 * 327.51515 * 1 2 3 26 26 H 1.08999 * 109.47178 * 207.51415 * 1 2 3 27 27 H 1.07996 * 120.34892 * 359.95428 * 3 2 1 28 28 H 1.07997 * 119.46189 * 179.97438 * 4 3 2 29 29 H 1.07996 * 119.71933 * 180.02562 * 6 5 4 30 30 H 1.09004 * 109.46978 * 84.44135 * 11 10 8 31 31 H 1.08999 * 109.46848 * 204.43726 * 11 10 8 32 32 H 1.08999 * 109.46804 * 324.44016 * 11 10 8 33 33 H 1.09003 * 109.47443 * 210.00137 * 12 10 8 34 34 H 1.09002 * 109.47197 * 330.00168 * 12 10 8 35 35 H 1.09003 * 109.46861 * 300.00534 * 13 12 10 36 36 H 1.09002 * 109.46669 * 59.99885 * 13 12 10 37 37 H 1.09003 * 109.47183 * 93.75043 * 15 14 13 38 38 H 1.08994 * 109.46946 * 213.75183 * 15 14 13 39 39 H 1.09002 * 109.46739 * 333.75279 * 15 14 13 40 40 H 0.97002 * 120.00498 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2167 1.1882 0.0000 4 6 3.5993 1.1508 0.0005 5 7 4.2497 0.0027 0.0016 6 6 3.6198 -1.1535 0.0016 7 6 2.2250 -1.2016 0.0061 8 6 1.5177 -2.4999 0.0126 9 8 0.6364 -2.7078 0.8236 10 7 1.8499 -3.4527 -0.8807 11 6 2.9847 -3.2462 -1.7841 12 6 1.0763 -4.6949 -0.9486 13 6 -0.0747 -4.5255 -1.9422 14 7 -0.8487 -5.7675 -2.0096 15 6 -0.4879 -6.8037 -2.9803 16 6 -1.9093 -5.9599 -1.1650 17 1 -2.4210 -5.1098 -0.7383 18 6 -2.3270 -7.2474 -0.8576 19 7 -1.5952 -8.2804 -1.2178 20 14 -3.9279 -7.5142 0.0674 21 1 -5.0540 -6.9499 -0.7192 22 1 -4.1462 -8.9691 0.2698 23 1 -3.8564 -6.8357 1.3864 24 1 -0.3633 0.0445 -1.0267 25 1 -0.3634 0.8669 0.5519 26 1 -0.3633 -0.9114 0.4747 27 1 1.6965 2.1346 -0.0007 28 1 4.1557 2.0764 0.0001 29 1 4.1872 -2.0724 0.0029 30 1 3.9075 -3.5326 -1.2795 31 1 2.8541 -3.8576 -2.6770 32 1 3.0367 -2.1951 -2.0677 33 1 1.7232 -5.5084 -1.2773 34 1 0.6738 -4.9266 0.0376 35 1 -0.7216 -3.7120 -1.6135 36 1 0.3278 -4.2938 -2.9283 37 1 0.1778 -7.5270 -2.5091 38 1 -1.3900 -7.3099 -3.3235 39 1 0.0172 -6.3451 -3.8304 40 1 -1.8872 -9.1802 -1.0033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715516594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:02 Heat of formation + Delta-G solvation = 10.014490 kcal Electronic energy + Delta-G solvation = -21635.949001 eV Core-core repulsion = 18451.057672 eV Total energy + Delta-G solvation = -3184.891330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.86687 -40.13037 -37.86127 -36.54300 -34.85262 -33.64418 -32.52323 -30.20018 -28.90474 -27.93007 -27.68652 -25.94519 -24.49571 -23.24789 -22.36611 -20.57190 -18.85003 -18.50616 -17.78873 -17.31886 -17.15649 -16.96557 -16.11756 -15.65554 -15.35494 -15.15375 -15.05092 -14.88079 -14.23499 -14.16471 -13.94161 -13.85685 -13.67720 -13.42536 -13.14236 -13.03974 -12.83140 -12.77883 -12.76727 -12.45022 -12.10020 -12.03566 -11.62822 -11.22088 -10.69167 -10.53183 -10.43590 -10.13684 -9.82241 -8.77942 -7.87054 -5.36398 -0.22942 0.16970 1.43290 1.45501 1.52037 1.56979 1.95167 2.49366 2.73341 3.27291 3.30836 3.52354 3.66322 3.74897 3.78823 4.05537 4.13045 4.25847 4.39863 4.41441 4.53341 4.59377 4.62640 4.64725 4.73390 4.83136 4.84618 4.87171 4.93458 5.11390 5.15158 5.31450 5.32866 5.49389 5.61136 5.62665 5.71889 6.29659 6.34296 6.86213 7.06179 7.13408 7.82654 8.24313 9.15869 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027788 B = 0.004204 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.403264 B = 6658.717265 C = 7241.170800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.006 4.006 3 C -0.169 4.169 4 C 0.119 3.881 5 N -0.506 5.506 6 C 0.135 3.865 7 C -0.196 4.196 8 C 0.555 3.445 9 O -0.574 6.574 10 N -0.602 5.602 11 C 0.071 3.929 12 C 0.111 3.889 13 C 0.150 3.850 14 N -0.615 5.615 15 C 0.177 3.823 16 C -0.267 4.267 17 H 0.058 0.942 18 C -0.045 4.045 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.283 1.283 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.059 0.941 27 H 0.174 0.826 28 H 0.196 0.804 29 H 0.172 0.828 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.027 0.973 36 H 0.066 0.934 37 H 0.008 0.992 38 H 0.019 0.981 39 H 0.035 0.965 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.293 19.252 -2.284 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.014 4.014 3 C -0.189 4.189 4 C -0.037 4.037 5 N -0.215 5.215 6 C -0.023 4.023 7 C -0.202 4.202 8 C 0.343 3.657 9 O -0.455 6.455 10 N -0.334 5.334 11 C -0.071 4.071 12 C -0.014 4.014 13 C 0.022 3.978 14 N -0.339 5.339 15 C 0.032 3.968 16 C -0.398 4.398 17 H 0.076 0.924 18 C -0.240 4.240 19 N -0.580 5.580 20 Si 0.793 3.207 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.209 1.209 24 H 0.103 0.897 25 H 0.117 0.883 26 H 0.078 0.922 27 H 0.192 0.808 28 H 0.213 0.787 29 H 0.189 0.811 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.026 0.974 38 H 0.038 0.962 39 H 0.054 0.946 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.717 18.942 -1.893 22.893 hybrid contribution -1.908 -0.891 0.730 2.229 sum 10.809 18.051 -1.163 21.072 Atomic orbital electron populations 1.21075 0.89906 1.04547 1.03699 1.20599 0.97362 0.92033 0.91437 1.22349 0.95670 0.98733 1.02125 1.23575 0.92085 0.97008 0.91038 1.67802 1.41028 0.98710 1.13947 1.23163 0.89441 0.97491 0.92201 1.20764 0.96241 0.93246 1.09925 1.18645 0.82350 0.84293 0.80378 1.90770 1.33944 1.80836 1.39909 1.47996 1.32175 1.17251 1.35964 1.22209 0.87504 1.03347 0.94031 1.22100 0.93921 0.84716 1.00713 1.21130 0.91452 0.88113 0.97074 1.44130 1.32882 1.17311 1.39577 1.20612 0.97446 0.89723 0.88990 1.19385 1.06370 0.91730 1.22277 0.92401 1.25748 1.02011 0.95737 1.00539 1.70179 1.38574 0.97832 1.51417 0.85382 0.80111 0.76516 0.78689 1.20146 1.21295 1.20891 0.89658 0.88268 0.92213 0.80825 0.78689 0.81140 0.90260 0.89232 0.90258 0.90257 0.93930 0.95496 0.91544 0.97408 0.96214 0.94626 0.94058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.72 71.23 0.69 -2.47 16 2 C -0.01 -0.14 5.95 -19.40 -0.12 -0.25 16 3 C -0.17 -2.58 9.81 22.33 0.22 -2.36 16 4 C 0.12 1.75 11.17 84.69 0.95 2.70 16 5 N -0.51 -10.15 10.35 -194.76 -2.01 -12.17 16 6 C 0.13 2.94 9.00 85.04 0.77 3.70 16 7 C -0.20 -5.16 4.87 -19.99 -0.10 -5.26 16 8 C 0.56 18.94 6.75 86.79 0.59 19.53 16 9 O -0.57 -25.27 14.51 -3.90 -0.06 -25.33 16 10 N -0.60 -18.69 2.87 -850.17 -2.44 -21.14 16 11 C 0.07 1.42 9.09 127.77 1.16 2.58 16 12 C 0.11 4.36 5.74 86.38 0.50 4.86 16 13 C 0.15 6.35 6.03 86.38 0.52 6.87 16 14 N -0.62 -31.87 2.92 -726.94 -2.12 -34.00 16 15 C 0.18 8.68 9.01 127.77 1.15 9.83 16 16 C -0.27 -15.51 9.66 84.03 0.81 -14.70 16 17 H 0.06 3.40 7.84 -2.91 -0.02 3.38 16 18 C -0.04 -2.60 5.15 84.86 0.44 -2.16 16 19 N -0.93 -55.87 10.60 21.65 0.23 -55.64 16 20 Si 0.97 46.96 29.56 68.60 2.03 48.99 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 23 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 24 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 25 H 0.10 1.72 8.12 -2.39 -0.02 1.70 16 26 H 0.06 1.91 5.61 -2.39 -0.01 1.90 16 27 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 28 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 29 H 0.17 3.17 6.40 -2.91 -0.02 3.16 16 30 H 0.08 1.26 7.12 -2.39 -0.02 1.24 16 31 H 0.09 1.62 8.03 -2.39 -0.02 1.60 16 32 H 0.08 1.41 6.32 -2.39 -0.02 1.39 16 33 H 0.08 2.96 8.07 -2.39 -0.02 2.94 16 34 H 0.04 2.07 7.36 -2.39 -0.02 2.05 16 35 H 0.03 1.22 8.03 -2.39 -0.02 1.20 16 36 H 0.07 2.39 7.87 -2.39 -0.02 2.37 16 37 H 0.01 0.40 7.41 -2.39 -0.02 0.39 16 38 H 0.02 1.04 7.22 -2.39 -0.02 1.02 16 39 H 0.04 1.43 7.85 -2.39 -0.02 1.42 16 40 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -74.87 329.93 4.22 -70.65 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.03 Total: 5.77 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: 7.58 Total: 22.87 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -6.35 Total: -122.95 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.06 Total: -25.33 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -74.87 4.22 -70.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715516594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.663 kcal (2) G-P(sol) polarization free energy of solvation -74.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds