Wall clock time and date at job start Mon Mar 30 2020 01:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38627 * 120.47392 * 2 1 4 4 C 1.38584 * 118.48962 * 180.02562 * 3 2 1 5 5 C 1.38596 * 119.35122 * 0.02562 * 4 3 2 6 6 N 1.31490 * 120.90458 * 359.74094 * 5 4 3 7 7 C 1.32748 * 121.63932 * 0.52880 * 6 5 4 8 8 C 1.48173 * 119.72314 * 179.75439 * 7 6 5 9 9 O 1.21514 * 119.99725 * 253.85642 * 8 7 6 10 10 N 1.34770 * 120.00000 * 73.85195 * 8 7 6 11 11 C 1.46501 * 120.00488 * 4.54805 * 10 8 7 12 12 C 1.46501 * 119.99804 * 184.54081 * 10 8 7 13 13 C 1.53002 * 109.47256 * 270.00179 * 12 10 8 14 14 N 1.46501 * 109.47256 * 180.02562 * 13 12 10 15 15 C 1.46498 * 120.00267 * 90.00080 * 14 13 12 16 16 C 1.36941 * 119.99705 * 270.00405 * 14 13 12 17 17 H 1.07991 * 120.00296 * 30.99331 * 16 14 13 18 18 C 1.38817 * 119.99716 * 210.99031 * 16 14 13 19 19 N 1.31626 * 119.99932 * 6.65290 * 18 16 14 20 20 Si 1.86796 * 120.00205 * 186.65004 * 18 16 14 21 21 H 1.48492 * 109.47293 * 59.99900 * 20 18 16 22 22 H 1.48501 * 109.47184 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46936 * 300.00247 * 20 18 16 24 24 H 1.08993 * 109.47012 * 264.66891 * 1 2 3 25 25 H 1.09006 * 109.46902 * 24.66896 * 1 2 3 26 26 H 1.09001 * 109.47547 * 144.66714 * 1 2 3 27 27 H 1.07998 * 120.75475 * 0.05066 * 3 2 1 28 28 H 1.08007 * 120.32167 * 179.97438 * 4 3 2 29 29 H 1.08010 * 119.54606 * 179.97438 * 5 4 3 30 30 H 1.09008 * 109.46983 * 265.58232 * 11 10 8 31 31 H 1.08999 * 109.46586 * 25.57653 * 11 10 8 32 32 H 1.09001 * 109.47345 * 145.57919 * 11 10 8 33 33 H 1.08998 * 109.47301 * 30.00093 * 12 10 8 34 34 H 1.08998 * 109.47180 * 150.00598 * 12 10 8 35 35 H 1.09002 * 109.47360 * 300.00293 * 13 12 10 36 36 H 1.09003 * 109.47135 * 60.00007 * 13 12 10 37 37 H 1.08995 * 109.47197 * 94.53254 * 15 14 13 38 38 H 1.08998 * 109.47457 * 214.53992 * 15 14 13 39 39 H 1.09003 * 109.46870 * 334.53969 * 15 14 13 40 40 H 0.97000 * 120.00237 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5950 1.1468 -0.0005 5 6 4.2321 -0.0841 -0.0016 6 7 3.5406 -1.2024 0.0030 7 6 2.2132 -1.2004 -0.0016 8 6 1.4766 -2.4861 -0.0016 9 8 0.9242 -2.8697 -1.0137 10 7 1.4193 -3.2299 1.1207 11 6 1.9992 -2.7221 2.3666 12 6 0.7770 -4.5464 1.0950 13 6 -0.7092 -4.3952 1.4255 14 7 -1.3514 -5.7118 1.4004 15 6 -1.4136 -6.5199 2.6208 16 6 -1.8935 -6.1870 0.2361 17 1 -1.4632 -5.9066 -0.7138 18 6 -2.9963 -7.0292 0.2771 19 7 -3.6009 -7.2666 1.4218 20 14 -3.6221 -7.8256 -1.2925 21 1 -2.5499 -8.6668 -1.8823 22 1 -4.8017 -8.6724 -0.9816 23 1 -4.0125 -6.7701 -2.2614 24 1 -0.3633 -0.0955 1.0232 25 1 -0.3633 0.9339 -0.4290 26 1 -0.3634 -0.8384 -0.5943 27 1 1.6902 2.1414 0.0008 28 1 4.1723 2.0597 -0.0010 29 1 5.3115 -0.1251 -0.0025 30 1 3.0180 -3.0953 2.4717 31 1 2.0120 -1.6324 2.3436 32 1 1.3992 -3.0608 3.2112 33 1 0.8858 -4.9844 0.1029 34 1 1.2490 -5.1954 1.8326 35 1 -0.8182 -3.9571 2.4177 36 1 -1.1813 -3.7462 0.6880 37 1 -2.3649 -6.3459 3.1237 38 1 -1.3268 -7.5753 2.3626 39 1 -0.5954 -6.2396 3.2842 40 1 -4.3717 -7.8548 1.4504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715792033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:18 Heat of formation + Delta-G solvation = 28.473080 kcal Electronic energy + Delta-G solvation = -21578.028304 eV Core-core repulsion = 18393.937399 eV Total energy + Delta-G solvation = -3184.090905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.85012 -38.94274 -36.04798 -34.83205 -33.82513 -32.34319 -31.32100 -28.75339 -27.59482 -26.45668 -25.78159 -24.81763 -23.11269 -22.33281 -20.60970 -19.54509 -17.53478 -16.97108 -16.58497 -16.21471 -15.79936 -15.07126 -14.59386 -14.52492 -14.26309 -13.66800 -13.38830 -13.38140 -13.01831 -13.00348 -12.77380 -12.53013 -12.50546 -12.42353 -11.89091 -11.85863 -11.27202 -10.82916 -10.76230 -10.50107 -10.24442 -10.13768 -10.00976 -9.85634 -9.74692 -9.48034 -9.08972 -8.63778 -8.34513 -6.56702 -5.66063 -3.21296 0.69421 1.00444 2.65926 3.09042 3.46085 3.48804 3.49211 3.52818 4.18261 4.46222 4.52598 4.58163 4.71327 4.76217 5.10416 5.16239 5.29281 5.42637 5.46197 5.50459 5.51418 5.69672 5.72017 5.77897 5.81484 5.94022 6.02769 6.19372 6.28051 6.37508 6.60706 6.70115 6.79912 7.03548 7.37113 7.55819 7.64947 7.76971 7.91882 8.29403 8.52719 9.32037 9.91674 10.43915 11.37856 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028851 B = 0.004026 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.254671 B = 6952.582193 C = 7291.260453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.097 4.097 3 C -0.079 4.079 4 C -0.160 4.160 5 C 0.092 3.908 6 N -0.454 5.454 7 C 0.100 3.900 8 C 0.572 3.428 9 O -0.517 6.517 10 N -0.597 5.597 11 C 0.085 3.915 12 C 0.093 3.907 13 C 0.143 3.857 14 N -0.598 5.598 15 C 0.160 3.840 16 C -0.257 4.257 17 H 0.067 0.933 18 C 0.008 3.992 19 N -0.908 5.908 20 Si 0.905 3.095 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.281 1.281 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.160 0.840 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.033 0.967 36 H 0.051 0.949 37 H 0.033 0.967 38 H 0.037 0.963 39 H -0.003 1.003 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.993 17.771 2.729 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.100 4.100 3 C -0.105 4.105 4 C -0.180 4.180 5 C -0.067 4.067 6 N -0.164 5.164 7 C -0.040 4.040 8 C 0.357 3.643 9 O -0.392 6.392 10 N -0.330 5.330 11 C -0.059 4.059 12 C -0.031 4.031 13 C 0.014 3.986 14 N -0.321 5.321 15 C 0.015 3.985 16 C -0.387 4.387 17 H 0.085 0.915 18 C -0.191 4.191 19 N -0.552 5.552 20 Si 0.734 3.266 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.208 1.208 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.178 0.822 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.015 0.985 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.936 16.576 2.259 21.774 hybrid contribution -0.606 0.442 -0.714 1.035 sum 13.330 17.018 1.545 21.672 Atomic orbital electron populations 1.20918 0.89413 1.04331 1.03511 1.20878 0.98013 0.92598 0.98484 1.21487 0.94155 0.97899 0.96957 1.22294 0.95233 0.99732 1.00775 1.22799 1.00384 0.87358 0.96178 1.67666 1.06650 1.31631 1.10461 1.21072 0.90245 0.93729 0.98917 1.17888 0.79913 0.82725 0.83803 1.90852 1.45452 1.70316 1.32534 1.47853 1.56848 1.19264 1.09039 1.21711 0.98677 0.98973 0.86511 1.22594 0.96144 0.80836 1.03482 1.21005 0.90247 0.88876 0.98438 1.43757 1.65946 1.13963 1.08419 1.20827 0.96208 0.94687 0.86739 1.19159 1.07585 1.26242 0.85743 0.91550 1.25225 0.96002 1.01082 0.96750 1.70008 1.21915 1.39401 1.23917 0.86336 0.78087 0.79101 0.83028 1.20922 1.21654 1.20760 0.90279 0.90770 0.89658 0.84258 0.84441 0.82249 0.92437 0.92113 0.90699 0.89848 0.91136 0.94870 0.93031 0.94834 0.94406 0.98478 0.93732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.55 36.00 0.34 -1.08 16 2 C -0.10 -1.17 5.93 -104.09 -0.62 -1.78 16 3 C -0.08 -0.70 9.83 -39.31 -0.39 -1.09 16 4 C -0.16 -1.26 10.11 -39.32 -0.40 -1.66 16 5 C 0.09 0.89 11.18 -17.57 -0.20 0.69 16 6 N -0.45 -6.19 10.29 -9.79 -0.10 -6.29 16 7 C 0.10 1.46 4.59 -83.01 -0.38 1.08 16 8 C 0.57 10.17 6.16 -12.18 -0.08 10.10 16 9 O -0.52 -11.27 16.00 5.35 0.09 -11.18 16 10 N -0.60 -9.79 2.87 -182.57 -0.52 -10.31 16 11 C 0.08 1.04 10.28 59.85 0.62 1.65 16 12 C 0.09 1.78 5.72 -4.04 -0.02 1.76 16 13 C 0.14 3.11 5.97 -4.04 -0.02 3.08 16 14 N -0.60 -15.59 2.90 -181.12 -0.53 -16.12 16 15 C 0.16 3.98 9.00 59.85 0.54 4.52 16 16 C -0.26 -7.42 9.59 -15.06 -0.14 -7.56 16 17 H 0.07 1.93 7.84 -52.49 -0.41 1.52 16 18 C 0.01 0.23 5.22 -17.43 -0.09 0.14 16 19 N -0.91 -27.09 10.89 55.49 0.60 -26.49 16 20 Si 0.90 22.71 29.56 -169.99 -5.02 17.68 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.65 8.06 -51.93 -0.42 0.24 16 26 H 0.08 1.23 6.76 -51.93 -0.35 0.88 16 27 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 29 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.06 0.68 6.81 -51.93 -0.35 0.32 16 32 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 33 H 0.08 1.83 7.49 -51.93 -0.39 1.44 16 34 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 35 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 36 H 0.05 1.21 8.04 -51.93 -0.42 0.79 16 37 H 0.03 0.90 7.24 -51.93 -0.38 0.52 16 38 H 0.04 0.99 7.67 -51.93 -0.40 0.60 16 39 H 0.00 -0.07 8.04 -51.93 -0.42 -0.49 16 40 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 337.92 15.07 5.09 5.09 Total: -1.00 -34.44 337.92 -7.27 -41.71 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -6.04 Total: -3.94 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -0.84 Total: 9.86 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.55 Total: -59.21 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.44 -7.27 -41.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715792033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.180 kcal (2) G-P(sol) polarization free energy of solvation -34.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds