Wall clock time and date at job start Mon Mar 30 2020 01:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38627 * 120.47392 * 2 1 4 4 C 1.38584 * 118.48962 * 180.02562 * 3 2 1 5 5 C 1.38596 * 119.35122 * 0.02562 * 4 3 2 6 6 N 1.31490 * 120.90458 * 359.74094 * 5 4 3 7 7 C 1.32748 * 121.63932 * 0.52880 * 6 5 4 8 8 C 1.48173 * 119.72314 * 179.75439 * 7 6 5 9 9 O 1.21514 * 119.99725 * 253.85642 * 8 7 6 10 10 N 1.34770 * 120.00000 * 73.85195 * 8 7 6 11 11 C 1.46501 * 120.00488 * 4.54805 * 10 8 7 12 12 C 1.46501 * 119.99804 * 184.54081 * 10 8 7 13 13 C 1.53002 * 109.47256 * 270.00179 * 12 10 8 14 14 N 1.46501 * 109.47256 * 180.02562 * 13 12 10 15 15 C 1.46498 * 120.00267 * 90.00080 * 14 13 12 16 16 C 1.36941 * 119.99705 * 270.00405 * 14 13 12 17 17 H 1.07991 * 120.00296 * 30.99331 * 16 14 13 18 18 C 1.38817 * 119.99716 * 210.99031 * 16 14 13 19 19 N 1.31626 * 119.99932 * 6.65290 * 18 16 14 20 20 Si 1.86796 * 120.00205 * 186.65004 * 18 16 14 21 21 H 1.48492 * 109.47293 * 59.99900 * 20 18 16 22 22 H 1.48501 * 109.47184 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46936 * 300.00247 * 20 18 16 24 24 H 1.08993 * 109.47012 * 264.66891 * 1 2 3 25 25 H 1.09006 * 109.46902 * 24.66896 * 1 2 3 26 26 H 1.09001 * 109.47547 * 144.66714 * 1 2 3 27 27 H 1.07998 * 120.75475 * 0.05066 * 3 2 1 28 28 H 1.08007 * 120.32167 * 179.97438 * 4 3 2 29 29 H 1.08010 * 119.54606 * 179.97438 * 5 4 3 30 30 H 1.09008 * 109.46983 * 265.58232 * 11 10 8 31 31 H 1.08999 * 109.46586 * 25.57653 * 11 10 8 32 32 H 1.09001 * 109.47345 * 145.57919 * 11 10 8 33 33 H 1.08998 * 109.47301 * 30.00093 * 12 10 8 34 34 H 1.08998 * 109.47180 * 150.00598 * 12 10 8 35 35 H 1.09002 * 109.47360 * 300.00293 * 13 12 10 36 36 H 1.09003 * 109.47135 * 60.00007 * 13 12 10 37 37 H 1.08995 * 109.47197 * 94.53254 * 15 14 13 38 38 H 1.08998 * 109.47457 * 214.53992 * 15 14 13 39 39 H 1.09003 * 109.46870 * 334.53969 * 15 14 13 40 40 H 0.97000 * 120.00237 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5950 1.1468 -0.0005 5 6 4.2321 -0.0841 -0.0016 6 7 3.5406 -1.2024 0.0030 7 6 2.2132 -1.2004 -0.0016 8 6 1.4766 -2.4861 -0.0016 9 8 0.9242 -2.8697 -1.0137 10 7 1.4193 -3.2299 1.1207 11 6 1.9992 -2.7221 2.3666 12 6 0.7770 -4.5464 1.0950 13 6 -0.7092 -4.3952 1.4255 14 7 -1.3514 -5.7118 1.4004 15 6 -1.4136 -6.5199 2.6208 16 6 -1.8935 -6.1870 0.2361 17 1 -1.4632 -5.9066 -0.7138 18 6 -2.9963 -7.0292 0.2771 19 7 -3.6009 -7.2666 1.4218 20 14 -3.6221 -7.8256 -1.2925 21 1 -2.5499 -8.6668 -1.8823 22 1 -4.8017 -8.6724 -0.9816 23 1 -4.0125 -6.7701 -2.2614 24 1 -0.3633 -0.0955 1.0232 25 1 -0.3633 0.9339 -0.4290 26 1 -0.3634 -0.8384 -0.5943 27 1 1.6902 2.1414 0.0008 28 1 4.1723 2.0597 -0.0010 29 1 5.3115 -0.1251 -0.0025 30 1 3.0180 -3.0953 2.4717 31 1 2.0120 -1.6324 2.3436 32 1 1.3992 -3.0608 3.2112 33 1 0.8858 -4.9844 0.1029 34 1 1.2490 -5.1954 1.8326 35 1 -0.8182 -3.9571 2.4177 36 1 -1.1813 -3.7462 0.6880 37 1 -2.3649 -6.3459 3.1237 38 1 -1.3268 -7.5753 2.3626 39 1 -0.5954 -6.2396 3.2842 40 1 -4.3717 -7.8548 1.4504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715792033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:18 Heat of formation + Delta-G solvation = 5.406679 kcal Electronic energy + Delta-G solvation = -21579.028538 eV Core-core repulsion = 18393.937399 eV Total energy + Delta-G solvation = -3185.091139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.85453 -40.13578 -37.82833 -36.47320 -34.66656 -33.65952 -32.93397 -30.38488 -28.51829 -27.90287 -27.62071 -26.14197 -24.50751 -23.20091 -22.43694 -20.79320 -18.87156 -18.55870 -17.92294 -17.51691 -16.96815 -16.50780 -16.06938 -15.72944 -15.43439 -15.24221 -15.02166 -14.54285 -14.39689 -14.09160 -13.99543 -13.92243 -13.70130 -13.43604 -13.22724 -13.11044 -12.83327 -12.77263 -12.73020 -12.47915 -12.20588 -11.98915 -11.64879 -11.34293 -10.77607 -10.71096 -10.46074 -9.94062 -9.88976 -8.67670 -7.86372 -5.45249 -0.13116 0.26622 1.37527 1.42583 1.45070 1.52142 1.84693 2.48453 2.67980 3.16849 3.26089 3.62385 3.75797 3.82721 3.97429 4.05998 4.08639 4.20073 4.36328 4.46395 4.51488 4.57775 4.61800 4.64743 4.71902 4.79779 4.83209 4.93554 5.07343 5.10529 5.13790 5.22051 5.27994 5.47582 5.62708 5.67305 5.69471 6.24951 6.34647 6.82082 6.98511 7.14206 7.81417 8.26730 9.14300 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028851 B = 0.004026 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.254671 B = 6952.582193 C = 7291.260453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.108 4.108 3 C -0.073 4.073 4 C -0.139 4.139 5 C 0.086 3.914 6 N -0.486 5.486 7 C 0.070 3.930 8 C 0.567 3.433 9 O -0.575 6.575 10 N -0.597 5.597 11 C 0.084 3.916 12 C 0.111 3.889 13 C 0.150 3.850 14 N -0.615 5.615 15 C 0.173 3.827 16 C -0.273 4.273 17 H 0.052 0.948 18 C -0.040 4.040 19 N -0.932 5.932 20 Si 0.966 3.034 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.280 1.280 24 H 0.084 0.916 25 H 0.102 0.898 26 H 0.043 0.957 27 H 0.176 0.824 28 H 0.183 0.817 29 H 0.191 0.809 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.023 0.977 37 H 0.010 0.990 38 H 0.014 0.986 39 H 0.039 0.961 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.913 20.483 3.559 26.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.111 4.111 3 C -0.099 4.099 4 C -0.158 4.158 5 C -0.074 4.074 6 N -0.196 5.196 7 C -0.068 4.068 8 C 0.354 3.646 9 O -0.454 6.454 10 N -0.328 5.328 11 C -0.058 4.058 12 C -0.013 4.013 13 C 0.023 3.977 14 N -0.339 5.339 15 C 0.028 3.972 16 C -0.403 4.403 17 H 0.070 0.930 18 C -0.236 4.236 19 N -0.577 5.577 20 Si 0.793 3.207 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.206 1.206 24 H 0.102 0.898 25 H 0.120 0.880 26 H 0.062 0.938 27 H 0.193 0.807 28 H 0.200 0.800 29 H 0.208 0.792 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.028 0.972 38 H 0.033 0.967 39 H 0.058 0.942 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 15.890 19.316 3.128 25.207 hybrid contribution -1.076 -0.253 -0.944 1.454 sum 14.814 19.064 2.184 24.241 Atomic orbital electron populations 1.20881 0.89770 1.03959 1.03272 1.20990 0.98000 0.93028 0.99055 1.21916 0.94810 0.97820 0.95317 1.22785 0.95018 1.00614 0.97358 1.23437 1.01721 0.87136 0.95074 1.67560 1.06240 1.34032 1.11808 1.20575 0.90929 0.92519 1.02811 1.18576 0.79202 0.83758 0.83056 1.90799 1.47963 1.72034 1.34592 1.47908 1.56262 1.18127 1.10523 1.21930 0.99271 0.99852 0.84720 1.22070 0.94785 0.82684 1.01811 1.21007 0.91168 0.86727 0.98803 1.43969 1.66427 1.15531 1.07992 1.20628 0.96615 0.93293 0.86632 1.19288 1.07938 1.26671 0.86402 0.93047 1.25918 0.96186 1.01722 0.99747 1.70150 1.22161 1.39895 1.25468 0.85381 0.77611 0.78164 0.79511 1.20365 1.20964 1.20591 0.89767 0.87979 0.93830 0.80705 0.79982 0.79238 0.91212 0.90793 0.89136 0.93581 0.89100 0.92393 0.95890 0.97193 0.96749 0.94216 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 9.55 71.24 0.68 -2.08 16 2 C -0.11 -2.45 5.93 -19.52 -0.12 -2.57 16 3 C -0.07 -1.01 9.83 22.45 0.22 -0.79 16 4 C -0.14 -1.50 10.11 22.44 0.23 -1.28 16 5 C 0.09 1.38 11.18 84.83 0.95 2.33 16 6 N -0.49 -12.66 10.29 -184.90 -1.90 -14.56 16 7 C 0.07 2.03 4.59 41.90 0.19 2.22 16 8 C 0.57 21.13 6.16 86.88 0.54 21.66 16 9 O -0.58 -27.15 16.00 -3.76 -0.06 -27.21 16 10 N -0.60 -19.89 2.87 -849.82 -2.44 -22.33 16 11 C 0.08 1.93 10.28 127.77 1.31 3.24 16 12 C 0.11 4.37 5.72 86.38 0.49 4.87 16 13 C 0.15 6.71 5.97 86.38 0.52 7.22 16 14 N -0.62 -32.88 2.90 -726.93 -2.11 -34.98 16 15 C 0.17 8.65 9.00 127.77 1.15 9.80 16 16 C -0.27 -16.27 9.59 84.03 0.81 -15.47 16 17 H 0.05 3.16 7.84 -2.92 -0.02 3.14 16 18 C -0.04 -2.34 5.22 84.86 0.44 -1.90 16 19 N -0.93 -56.66 10.89 21.65 0.24 -56.43 16 20 Si 0.97 47.70 29.56 68.60 2.03 49.73 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 24 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.10 1.64 8.06 -2.38 -0.02 1.62 16 26 H 0.04 1.35 6.76 -2.39 -0.02 1.34 16 27 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 28 H 0.18 0.40 8.06 -2.91 -0.02 0.38 16 29 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 30 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.07 1.52 6.81 -2.39 -0.02 1.51 16 32 H 0.09 1.79 8.11 -2.39 -0.02 1.77 16 33 H 0.05 2.15 7.49 -2.39 -0.02 2.13 16 34 H 0.09 3.17 8.07 -2.39 -0.02 3.15 16 35 H 0.06 2.28 8.07 -2.39 -0.02 2.26 16 36 H 0.02 1.13 8.04 -2.39 -0.02 1.12 16 37 H 0.01 0.53 7.24 -2.39 -0.02 0.52 16 38 H 0.01 0.75 7.67 -2.39 -0.02 0.73 16 39 H 0.04 1.61 8.04 -2.39 -0.02 1.59 16 40 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -80.06 337.92 4.18 -75.88 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: 1.02 Total: 2.65 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: 7.41 Total: 27.25 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -6.22 Total: -128.31 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.06 Total: -27.21 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -80.06 4.18 -75.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715792033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.289 kcal (2) G-P(sol) polarization free energy of solvation -80.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds