Wall clock time and date at job start Mon Mar 30 2020 02:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38174 * 120.49813 * 2 1 4 4 N 1.31804 * 120.89009 * 180.02562 * 3 2 1 5 5 C 1.31823 * 122.05022 * 359.97438 * 4 3 2 6 6 C 1.38124 * 120.89922 * 0.02562 * 5 4 3 7 7 C 1.39795 * 120.49780 * 180.02562 * 2 1 3 8 8 C 1.48148 * 120.92418 * 0.02562 * 7 2 1 9 9 O 1.21515 * 119.99955 * 312.81157 * 8 7 2 10 10 N 1.34779 * 119.99932 * 132.80821 * 8 7 2 11 11 C 1.46506 * 120.00027 * 4.31755 * 10 8 7 12 12 C 1.46498 * 120.00175 * 184.31111 * 10 8 7 13 13 C 1.53000 * 109.46871 * 90.00176 * 12 10 8 14 14 N 1.46497 * 109.47262 * 179.97438 * 13 12 10 15 15 C 1.46497 * 120.00227 * 270.00227 * 14 13 12 16 16 C 1.36945 * 119.99976 * 90.00064 * 14 13 12 17 17 H 1.08005 * 119.99535 * 27.18066 * 16 14 13 18 18 C 1.38806 * 120.00066 * 207.18532 * 16 14 13 19 19 N 1.31619 * 120.00118 * 8.06013 * 18 16 14 20 20 Si 1.86806 * 119.99970 * 188.06254 * 18 16 14 21 21 H 1.48501 * 109.47044 * 89.99542 * 20 18 16 22 22 H 1.48502 * 109.47066 * 209.99578 * 20 18 16 23 23 H 1.48502 * 109.46891 * 329.99843 * 20 18 16 24 24 H 1.08998 * 109.47736 * 274.23589 * 1 2 3 25 25 H 1.09003 * 109.47108 * 34.23662 * 1 2 3 26 26 H 1.08996 * 109.46820 * 154.23445 * 1 2 3 27 27 H 1.07996 * 119.55410 * 0.03285 * 3 2 1 28 28 H 1.08004 * 119.54860 * 180.02562 * 5 4 3 29 29 H 1.08006 * 120.50000 * 179.97438 * 6 5 4 30 30 H 1.08997 * 109.47113 * 85.15356 * 11 10 8 31 31 H 1.09000 * 109.46942 * 205.15853 * 11 10 8 32 32 H 1.09004 * 109.46717 * 325.15723 * 11 10 8 33 33 H 1.08993 * 109.47219 * 210.00498 * 12 10 8 34 34 H 1.09002 * 109.46908 * 330.00441 * 12 10 8 35 35 H 1.09002 * 109.47210 * 300.00122 * 13 12 10 36 36 H 1.09002 * 109.47137 * 60.00406 * 13 12 10 37 37 H 1.09001 * 109.47309 * 94.10121 * 15 14 13 38 38 H 1.09004 * 109.46963 * 214.09923 * 15 14 13 39 39 H 1.08993 * 109.47073 * 334.09909 * 15 14 13 40 40 H 0.97004 * 119.99871 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1906 0.0000 4 7 3.5263 1.1996 -0.0005 5 6 4.2334 0.0871 -0.0005 6 6 3.6137 -1.1473 -0.0006 7 6 2.2165 -1.2045 -0.0005 8 6 1.5078 -2.5055 -0.0017 9 8 0.5888 -2.6975 0.7698 10 7 1.8823 -3.4762 -0.8585 11 6 3.0492 -3.2804 -1.7225 12 6 1.1227 -4.7270 -0.9258 13 6 0.0093 -4.5921 -1.9665 14 7 -0.7500 -5.8431 -2.0343 15 6 -0.3425 -6.8977 -2.9659 16 6 -1.8406 -6.0268 -1.2268 17 1 -2.4068 -5.1741 -0.8819 18 6 -2.2184 -7.3086 -0.8515 19 7 -1.4431 -8.3333 -1.1368 20 14 -3.8272 -7.5795 0.0585 21 1 -4.9174 -7.8133 -0.9223 22 1 -3.6997 -8.7618 0.9481 23 1 -4.1433 -6.3788 0.8731 24 1 -0.3634 0.0759 1.0248 25 1 -0.3633 0.8496 -0.5782 26 1 -0.3633 -0.9255 -0.4467 27 1 1.6691 2.1263 0.0005 28 1 5.3121 0.1416 -0.0005 29 1 4.1994 -2.0548 -0.0010 30 1 3.9532 -3.5579 -1.1805 31 1 2.9522 -3.9044 -2.6110 32 1 3.1102 -2.2332 -2.0188 33 1 1.7888 -5.5417 -1.2098 34 1 0.6847 -4.9390 0.0495 35 1 -0.6567 -3.7773 -1.6824 36 1 0.4473 -4.3801 -2.9419 37 1 0.3061 -7.6066 -2.4512 38 1 -1.2266 -7.4169 -3.3362 39 1 0.1960 -6.4545 -3.8035 40 1 -1.7073 -9.2291 -0.8749 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715817973.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:57 Heat of formation + Delta-G solvation = 31.137663 kcal Electronic energy + Delta-G solvation = -21629.575876 eV Core-core repulsion = 18445.600516 eV Total energy + Delta-G solvation = -3183.975360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86420 -39.04061 -36.15169 -35.00170 -33.61177 -32.42270 -31.28815 -28.69934 -27.54873 -26.60272 -25.85891 -24.74633 -23.22444 -22.23703 -20.62817 -19.48744 -17.54576 -16.97263 -16.67225 -15.98252 -15.57362 -15.29560 -14.93240 -14.58099 -14.21583 -13.68303 -13.58304 -13.39099 -13.20732 -13.00032 -12.84728 -12.55386 -12.39304 -12.20297 -11.90330 -11.66143 -11.33536 -10.88025 -10.84156 -10.52199 -10.23818 -10.12062 -9.98037 -9.86430 -9.77644 -9.38659 -9.11610 -8.63015 -8.43247 -6.71028 -5.72841 -3.23112 0.73928 0.88364 2.79305 3.12448 3.40892 3.46727 3.49851 3.61012 4.20971 4.35158 4.52944 4.60010 4.66081 4.80375 5.09323 5.18850 5.34172 5.41421 5.45612 5.50959 5.61532 5.62934 5.64246 5.69072 5.78727 5.96375 6.16670 6.19439 6.25768 6.43390 6.55255 6.70860 6.71847 6.99699 7.33335 7.54334 7.70334 7.71460 7.84352 8.27772 8.43366 9.24909 9.85210 10.35293 11.32031 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027560 B = 0.004210 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.737736 B = 6648.505712 C = 7247.994236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C 0.094 3.906 4 N -0.474 5.474 5 C 0.085 3.915 6 C -0.142 4.142 7 C -0.078 4.078 8 C 0.550 3.450 9 O -0.516 6.516 10 N -0.603 5.603 11 C 0.075 3.925 12 C 0.092 3.908 13 C 0.144 3.856 14 N -0.597 5.597 15 C 0.162 3.838 16 C -0.255 4.255 17 H 0.068 0.932 18 C 0.006 3.994 19 N -0.909 5.909 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.278 1.278 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.160 0.840 28 H 0.159 0.841 29 H 0.142 0.858 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.035 0.965 37 H 0.031 0.969 38 H 0.043 0.957 39 H -0.004 1.004 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.656 15.056 -1.379 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C -0.063 4.063 4 N -0.182 5.182 5 C -0.071 4.071 6 C -0.162 4.162 7 C -0.089 4.089 8 C 0.336 3.664 9 O -0.392 6.392 10 N -0.337 5.337 11 C -0.068 4.068 12 C -0.032 4.032 13 C 0.016 3.984 14 N -0.320 5.320 15 C 0.017 3.983 16 C -0.385 4.385 17 H 0.086 0.914 18 C -0.192 4.192 19 N -0.553 5.553 20 Si 0.735 3.265 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.203 1.203 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.177 0.823 28 H 0.177 0.823 29 H 0.160 0.840 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.015 0.985 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.555 15.502 -0.963 19.358 hybrid contribution -0.998 -1.221 0.538 1.667 sum 10.557 14.281 -0.425 17.764 Atomic orbital electron populations 1.20821 0.89250 1.03646 1.03471 1.21050 0.98197 0.92517 0.97199 1.22653 0.89753 0.97272 0.96640 1.67528 1.08270 1.31797 1.10611 1.22673 1.00388 0.87269 0.96819 1.22457 0.93820 1.00330 0.99634 1.20406 0.94080 0.94205 1.00226 1.18222 0.83577 0.83336 0.81245 1.90841 1.29026 1.80503 1.38786 1.48028 1.29739 1.17538 1.38367 1.21958 0.87767 1.02228 0.94889 1.22724 0.94262 0.82278 1.03931 1.21122 0.91955 0.90492 0.94850 1.43913 1.30345 1.14546 1.43219 1.20831 0.98353 0.90051 0.89027 1.19229 1.02596 0.92384 1.24258 0.91417 1.25140 0.98751 0.96347 0.98999 1.70027 1.36467 0.98575 1.50278 0.86239 0.83271 0.77518 0.79483 1.21441 1.21641 1.20284 0.89940 0.91104 0.90415 0.82262 0.82344 0.84021 0.92648 0.90467 0.91489 0.91126 0.89343 0.93672 0.94672 0.95117 0.93862 0.98516 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.22 36.01 0.33 -1.03 16 2 C -0.09 -1.07 5.93 -104.06 -0.62 -1.68 16 3 C 0.09 1.01 10.88 -17.59 -0.19 0.82 16 4 N -0.47 -5.36 10.33 -13.30 -0.14 -5.50 16 5 C 0.08 0.82 11.17 -17.60 -0.20 0.62 16 6 C -0.14 -1.48 7.86 -39.02 -0.31 -1.79 16 7 C -0.08 -1.03 4.97 -104.65 -0.52 -1.55 16 8 C 0.55 9.10 6.48 -12.19 -0.08 9.02 16 9 O -0.52 -10.66 15.14 5.35 0.08 -10.58 16 10 N -0.60 -9.32 2.87 -182.58 -0.52 -9.84 16 11 C 0.08 0.81 9.05 59.85 0.54 1.35 16 12 C 0.09 1.76 5.74 -4.04 -0.02 1.74 16 13 C 0.14 3.03 6.03 -4.04 -0.02 3.01 16 14 N -0.60 -15.19 2.91 -181.12 -0.53 -15.72 16 15 C 0.16 3.94 9.02 59.85 0.54 4.48 16 16 C -0.25 -7.18 9.63 -15.06 -0.14 -7.32 16 17 H 0.07 1.92 7.84 -52.48 -0.41 1.51 16 18 C 0.01 0.17 5.19 -17.43 -0.09 0.08 16 19 N -0.91 -26.52 10.71 55.49 0.59 -25.93 16 20 Si 0.91 22.34 29.56 -169.99 -5.03 17.32 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 26 H 0.08 1.13 6.54 -51.93 -0.34 0.79 16 27 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 28 H 0.16 1.04 8.06 -52.48 -0.42 0.61 16 29 H 0.14 1.20 6.24 -52.48 -0.33 0.87 16 30 H 0.06 0.48 7.07 -51.93 -0.37 0.12 16 31 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 32 H 0.07 0.64 6.21 -51.93 -0.32 0.32 16 33 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 34 H 0.09 2.04 7.37 -51.93 -0.38 1.65 16 35 H 0.04 1.00 8.04 -51.93 -0.42 0.58 16 36 H 0.03 0.66 7.86 -51.93 -0.41 0.25 16 37 H 0.03 0.80 7.33 -51.93 -0.38 0.42 16 38 H 0.04 1.13 7.42 -51.93 -0.39 0.75 16 39 H 0.00 -0.08 7.84 -51.93 -0.41 -0.48 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 330.58 15.07 4.98 4.98 Total: -1.00 -33.07 330.58 -7.15 -40.22 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.81 Total: -2.71 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -0.78 Total: 7.76 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.60 Total: -56.99 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.07 -7.15 -40.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715817973.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.356 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds