Wall clock time and date at job start Mon Mar 30 2020 02:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38174 * 120.49813 * 2 1 4 4 N 1.31804 * 120.89009 * 180.02562 * 3 2 1 5 5 C 1.31823 * 122.05022 * 359.97438 * 4 3 2 6 6 C 1.38124 * 120.89922 * 0.02562 * 5 4 3 7 7 C 1.39795 * 120.49780 * 180.02562 * 2 1 3 8 8 C 1.48148 * 120.92418 * 0.02562 * 7 2 1 9 9 O 1.21515 * 119.99955 * 312.81157 * 8 7 2 10 10 N 1.34779 * 119.99932 * 132.80821 * 8 7 2 11 11 C 1.46506 * 120.00027 * 4.31755 * 10 8 7 12 12 C 1.46498 * 120.00175 * 184.31111 * 10 8 7 13 13 C 1.53000 * 109.46871 * 90.00176 * 12 10 8 14 14 N 1.46497 * 109.47262 * 179.97438 * 13 12 10 15 15 C 1.46497 * 120.00227 * 270.00227 * 14 13 12 16 16 C 1.36945 * 119.99976 * 90.00064 * 14 13 12 17 17 H 1.08005 * 119.99535 * 27.18066 * 16 14 13 18 18 C 1.38806 * 120.00066 * 207.18532 * 16 14 13 19 19 N 1.31619 * 120.00118 * 8.06013 * 18 16 14 20 20 Si 1.86806 * 119.99970 * 188.06254 * 18 16 14 21 21 H 1.48501 * 109.47044 * 89.99542 * 20 18 16 22 22 H 1.48502 * 109.47066 * 209.99578 * 20 18 16 23 23 H 1.48502 * 109.46891 * 329.99843 * 20 18 16 24 24 H 1.08998 * 109.47736 * 274.23589 * 1 2 3 25 25 H 1.09003 * 109.47108 * 34.23662 * 1 2 3 26 26 H 1.08996 * 109.46820 * 154.23445 * 1 2 3 27 27 H 1.07996 * 119.55410 * 0.03285 * 3 2 1 28 28 H 1.08004 * 119.54860 * 180.02562 * 5 4 3 29 29 H 1.08006 * 120.50000 * 179.97438 * 6 5 4 30 30 H 1.08997 * 109.47113 * 85.15356 * 11 10 8 31 31 H 1.09000 * 109.46942 * 205.15853 * 11 10 8 32 32 H 1.09004 * 109.46717 * 325.15723 * 11 10 8 33 33 H 1.08993 * 109.47219 * 210.00498 * 12 10 8 34 34 H 1.09002 * 109.46908 * 330.00441 * 12 10 8 35 35 H 1.09002 * 109.47210 * 300.00122 * 13 12 10 36 36 H 1.09002 * 109.47137 * 60.00406 * 13 12 10 37 37 H 1.09001 * 109.47309 * 94.10121 * 15 14 13 38 38 H 1.09004 * 109.46963 * 214.09923 * 15 14 13 39 39 H 1.08993 * 109.47073 * 334.09909 * 15 14 13 40 40 H 0.97004 * 119.99871 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1906 0.0000 4 7 3.5263 1.1996 -0.0005 5 6 4.2334 0.0871 -0.0005 6 6 3.6137 -1.1473 -0.0006 7 6 2.2165 -1.2045 -0.0005 8 6 1.5078 -2.5055 -0.0017 9 8 0.5888 -2.6975 0.7698 10 7 1.8823 -3.4762 -0.8585 11 6 3.0492 -3.2804 -1.7225 12 6 1.1227 -4.7270 -0.9258 13 6 0.0093 -4.5921 -1.9665 14 7 -0.7500 -5.8431 -2.0343 15 6 -0.3425 -6.8977 -2.9659 16 6 -1.8406 -6.0268 -1.2268 17 1 -2.4068 -5.1741 -0.8819 18 6 -2.2184 -7.3086 -0.8515 19 7 -1.4431 -8.3333 -1.1368 20 14 -3.8272 -7.5795 0.0585 21 1 -4.9174 -7.8133 -0.9223 22 1 -3.6997 -8.7618 0.9481 23 1 -4.1433 -6.3788 0.8731 24 1 -0.3634 0.0759 1.0248 25 1 -0.3633 0.8496 -0.5782 26 1 -0.3633 -0.9255 -0.4467 27 1 1.6691 2.1263 0.0005 28 1 5.3121 0.1416 -0.0005 29 1 4.1994 -2.0548 -0.0010 30 1 3.9532 -3.5579 -1.1805 31 1 2.9522 -3.9044 -2.6110 32 1 3.1102 -2.2332 -2.0188 33 1 1.7888 -5.5417 -1.2098 34 1 0.6847 -4.9390 0.0495 35 1 -0.6567 -3.7773 -1.6824 36 1 0.4473 -4.3801 -2.9419 37 1 0.3061 -7.6066 -2.4512 38 1 -1.2266 -7.4169 -3.3362 39 1 0.1960 -6.4545 -3.8035 40 1 -1.7073 -9.2291 -0.8749 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715817973.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:56 Heat of formation + Delta-G solvation = 9.757705 kcal Electronic energy + Delta-G solvation = -21630.502981 eV Core-core repulsion = 18445.600516 eV Total energy + Delta-G solvation = -3184.902465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.87645 -40.18776 -37.86540 -36.55692 -34.55718 -33.72440 -32.94037 -30.26908 -28.48478 -27.93021 -27.68190 -26.09603 -24.54557 -23.26215 -22.37790 -20.69102 -18.87371 -18.60366 -17.93278 -17.19340 -16.98343 -16.45320 -16.24556 -15.87048 -15.53705 -15.19113 -15.06542 -14.66675 -14.36372 -14.21868 -14.09028 -13.95271 -13.72637 -13.30389 -13.14488 -13.06976 -12.81665 -12.78038 -12.50865 -12.45253 -12.11640 -12.05384 -11.63858 -11.39590 -10.77481 -10.70464 -10.39685 -9.95177 -9.82976 -8.75750 -7.88341 -5.41089 -0.20214 0.08282 1.41984 1.43501 1.52804 1.57060 1.91844 2.47837 2.75542 3.25343 3.29351 3.51196 3.73851 3.79961 3.80480 3.97107 4.09539 4.25168 4.36466 4.43905 4.52027 4.57903 4.66453 4.67506 4.77328 4.82709 4.83516 4.86802 4.92970 5.09184 5.13055 5.23691 5.29785 5.47433 5.61085 5.63394 5.70291 6.28854 6.32840 6.91306 7.01540 7.12647 7.80799 8.23839 9.14021 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027560 B = 0.004210 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.737736 B = 6648.505712 C = 7247.994236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.101 4.101 3 C 0.099 3.901 4 N -0.486 5.486 5 C 0.092 3.908 6 C -0.134 4.134 7 C -0.097 4.097 8 C 0.547 3.453 9 O -0.571 6.571 10 N -0.601 5.601 11 C 0.068 3.932 12 C 0.112 3.888 13 C 0.149 3.851 14 N -0.615 5.615 15 C 0.175 3.825 16 C -0.269 4.269 17 H 0.056 0.944 18 C -0.042 4.042 19 N -0.932 5.932 20 Si 0.964 3.036 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.277 1.277 24 H 0.075 0.925 25 H 0.099 0.901 26 H 0.042 0.958 27 H 0.186 0.814 28 H 0.196 0.804 29 H 0.164 0.836 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.025 0.975 36 H 0.066 0.934 37 H 0.010 0.990 38 H 0.016 0.984 39 H 0.037 0.963 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.751 16.753 -2.144 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.104 4.104 3 C -0.058 4.058 4 N -0.195 5.195 5 C -0.064 4.064 6 C -0.154 4.154 7 C -0.108 4.108 8 C 0.335 3.665 9 O -0.451 6.451 10 N -0.333 5.333 11 C -0.073 4.073 12 C -0.014 4.014 13 C 0.022 3.978 14 N -0.338 5.338 15 C 0.031 3.969 16 C -0.399 4.399 17 H 0.074 0.926 18 C -0.238 4.238 19 N -0.578 5.578 20 Si 0.792 3.208 21 H -0.206 1.206 22 H -0.215 1.215 23 H -0.202 1.202 24 H 0.094 0.906 25 H 0.118 0.882 26 H 0.062 0.938 27 H 0.203 0.797 28 H 0.213 0.787 29 H 0.181 0.819 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.029 0.971 38 H 0.035 0.965 39 H 0.055 0.945 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.696 17.234 -1.761 22.084 hybrid contribution -1.560 -1.652 0.742 2.390 sum 12.137 15.582 -1.019 19.777 Atomic orbital electron populations 1.20752 0.89720 1.03020 1.03236 1.21148 0.98127 0.92974 0.98136 1.22987 0.89794 0.97500 0.95536 1.67630 1.08412 1.32587 1.10844 1.23261 1.01957 0.86314 0.94837 1.22669 0.92385 1.01772 0.98549 1.20245 0.95400 0.92443 1.02748 1.18807 0.82902 0.84445 0.80323 1.90807 1.31601 1.81591 1.41076 1.47993 1.30549 1.15917 1.38871 1.22292 0.86568 1.03666 0.94769 1.22090 0.94236 0.84413 1.00611 1.21134 0.91827 0.88009 0.96818 1.44098 1.30692 1.15776 1.43281 1.20623 0.97026 0.89628 0.89650 1.19382 1.03764 0.92234 1.24508 0.92634 1.25808 1.01764 0.96129 1.00050 1.70163 1.37767 0.98609 1.51213 0.85320 0.79947 0.77136 0.78379 1.20584 1.21497 1.20247 0.90634 0.88218 0.93847 0.79735 0.78749 0.81871 0.89858 0.89464 0.89844 0.90152 0.94008 0.95678 0.91546 0.97139 0.96536 0.94497 0.94012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.66 9.22 71.24 0.66 -2.00 16 2 C -0.10 -2.38 5.93 -19.50 -0.12 -2.49 16 3 C 0.10 1.88 10.88 84.68 0.92 2.80 16 4 N -0.49 -9.41 10.33 -196.00 -2.03 -11.44 16 5 C 0.09 1.43 11.17 84.67 0.95 2.38 16 6 C -0.13 -2.37 7.86 22.63 0.18 -2.19 16 7 C -0.10 -2.47 4.97 -19.88 -0.10 -2.57 16 8 C 0.55 18.36 6.48 86.88 0.56 18.93 16 9 O -0.57 -25.02 15.14 -3.76 -0.06 -25.08 16 10 N -0.60 -18.20 2.87 -849.84 -2.44 -20.64 16 11 C 0.07 1.26 9.05 127.77 1.16 2.42 16 12 C 0.11 4.35 5.74 86.38 0.50 4.85 16 13 C 0.15 6.33 6.03 86.38 0.52 6.85 16 14 N -0.61 -31.74 2.91 -726.94 -2.12 -33.86 16 15 C 0.18 8.53 9.02 127.77 1.15 9.68 16 16 C -0.27 -15.56 9.63 84.03 0.81 -14.75 16 17 H 0.06 3.28 7.84 -2.91 -0.02 3.26 16 18 C -0.04 -2.40 5.19 84.86 0.44 -1.96 16 19 N -0.93 -55.48 10.71 21.65 0.23 -55.25 16 20 Si 0.96 46.87 29.56 68.60 2.03 48.90 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 23 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 24 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.10 1.71 8.12 -2.39 -0.02 1.69 16 26 H 0.04 1.34 6.54 -2.39 -0.02 1.32 16 27 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 28 H 0.20 1.54 8.06 -2.91 -0.02 1.51 16 29 H 0.16 2.11 6.24 -2.91 -0.02 2.09 16 30 H 0.08 1.12 7.07 -2.39 -0.02 1.10 16 31 H 0.09 1.47 8.04 -2.39 -0.02 1.45 16 32 H 0.08 1.31 6.21 -2.39 -0.01 1.30 16 33 H 0.08 2.96 8.07 -2.39 -0.02 2.94 16 34 H 0.04 2.02 7.37 -2.39 -0.02 2.01 16 35 H 0.02 1.15 8.04 -2.39 -0.02 1.13 16 36 H 0.07 2.38 7.86 -2.39 -0.02 2.36 16 37 H 0.01 0.54 7.33 -2.39 -0.02 0.52 16 38 H 0.02 0.85 7.42 -2.39 -0.02 0.83 16 39 H 0.04 1.47 7.84 -2.39 -0.02 1.45 16 40 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -75.07 330.58 4.27 -70.79 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 1.03 Total: 4.64 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 7.63 Total: 21.93 kcal Atomic # 7 Polarization: -114.84 SS G_CDS: -6.35 Total: -121.19 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.06 Total: -25.08 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -75.07 4.27 -70.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715817973.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.553 kcal (2) G-P(sol) polarization free energy of solvation -75.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds