Wall clock time and date at job start Mon Mar 30 2020 01:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34496 * 125.57019 * 2 1 4 4 C 1.46691 * 106.33050 * 179.97438 * 3 2 1 5 5 C 1.47254 * 126.93848 * 180.02562 * 4 3 2 6 6 O 1.21620 * 120.00036 * 179.97438 * 5 4 3 7 7 N 1.34782 * 120.00425 * 359.97438 * 5 4 3 8 8 C 1.46502 * 120.00349 * 179.97438 * 7 5 4 9 9 C 1.50692 * 109.47117 * 179.97438 * 8 7 5 10 10 C 1.31005 * 119.99943 * 124.99802 * 9 8 7 11 11 C 1.50702 * 120.00010 * 180.02562 * 10 9 8 12 12 N 1.46492 * 109.47131 * 125.00193 * 11 10 9 13 13 C 1.36937 * 120.00019 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99837 * 0.02562 * 13 12 11 15 15 C 1.38817 * 120.00071 * 180.02562 * 13 12 11 16 16 N 1.31618 * 119.99812 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99708 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47000 * 90.00544 * 17 15 13 19 19 H 1.48503 * 109.46962 * 209.99917 * 17 15 13 20 20 H 1.48491 * 109.47701 * 330.00158 * 17 15 13 21 21 C 1.36767 * 106.11385 * 359.97438 * 4 3 2 22 22 C 1.50703 * 125.79733 * 180.02562 * 21 4 3 23 23 N 1.34658 * 108.40157 * 0.26764 * 21 4 3 24 24 H 0.96999 * 124.85098 * 179.70548 * 23 21 4 25 25 H 1.08999 * 109.47501 * 90.02406 * 1 2 3 26 26 H 1.08999 * 109.47152 * 210.02474 * 1 2 3 27 27 H 1.09006 * 109.47084 * 330.02163 * 1 2 3 28 28 H 1.08000 * 126.83304 * 359.97438 * 3 2 1 29 29 H 0.97002 * 119.99772 * 359.97438 * 7 5 4 30 30 H 1.08995 * 109.46904 * 299.99914 * 8 7 5 31 31 H 1.09000 * 109.46764 * 59.99649 * 8 7 5 32 32 H 1.08001 * 120.00544 * 305.00158 * 9 8 7 33 33 H 1.08001 * 119.99513 * 0.02562 * 10 9 8 34 34 H 1.09000 * 109.46520 * 245.00280 * 11 10 9 35 35 H 1.08999 * 109.47306 * 4.99845 * 11 10 9 36 36 H 0.97006 * 119.99967 * 359.97438 * 12 11 10 37 37 H 0.97003 * 119.99276 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47152 * 90.00020 * 22 21 4 39 39 H 1.09001 * 109.46980 * 330.00120 * 22 21 4 40 40 H 1.09004 * 109.47113 * 210.00101 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0940 0.0000 4 6 3.6743 0.6106 0.0006 5 6 4.8977 1.4303 0.0014 6 8 5.9891 0.8937 0.0023 7 7 4.8079 2.7751 0.0010 8 6 6.0251 3.5905 0.0024 9 6 5.6516 5.0504 0.0010 10 6 6.1183 5.8468 0.9306 11 6 5.7443 7.3067 0.9296 12 7 5.1640 7.6630 2.2267 13 6 4.7473 8.9462 2.4610 14 1 4.8460 9.6954 1.6894 15 6 4.1978 9.2839 3.6903 16 7 3.7968 10.5172 3.9153 17 14 4.0264 7.9878 5.0244 18 1 5.2552 7.9701 5.8581 19 1 2.8540 8.3079 5.8778 20 1 3.8338 6.6552 4.3983 21 6 3.5998 -0.7550 0.0015 22 6 4.7722 -1.7019 0.0030 23 7 2.3008 -1.1098 -0.0045 24 1 1.9758 -2.0237 -0.0093 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 1.9628 2.1235 -0.0004 29 1 3.9374 3.2031 -0.0001 30 1 6.6118 3.3660 0.8931 31 1 6.6140 3.3656 -0.8869 32 1 4.9991 5.4403 -0.7663 33 1 6.7711 5.4570 1.6977 34 1 6.6349 7.9096 0.7520 35 1 5.0153 7.4945 0.1414 36 1 5.0750 6.9899 2.9195 37 1 3.4126 10.7530 4.7741 38 1 5.0542 -1.9294 1.0310 39 1 5.6144 -1.2381 -0.5106 40 1 4.4961 -2.6229 -0.5104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716349339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:35 Heat of formation + Delta-G solvation = 0.954565 kcal Electronic energy + Delta-G solvation = -20127.623395 eV Core-core repulsion = 16942.339198 eV Total energy + Delta-G solvation = -3185.284197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.28695 -40.15379 -37.74519 -36.24860 -34.43159 -33.51667 -32.95575 -31.93357 -30.02871 -28.92313 -26.31545 -25.30262 -23.64530 -22.74650 -21.36568 -21.24583 -20.33402 -19.50117 -17.99239 -17.20238 -16.67838 -16.58172 -16.47568 -15.97949 -15.60935 -15.10531 -14.93615 -14.77676 -14.45989 -14.23133 -14.12644 -13.99580 -13.84780 -13.49447 -13.44420 -13.05606 -12.97065 -12.90793 -12.77833 -12.40521 -12.19151 -11.95520 -11.77861 -11.12013 -10.96070 -10.36006 -10.03741 -9.72562 -9.30291 -8.96188 -8.04095 -5.38298 0.73050 1.04824 1.38824 1.41545 1.42501 1.49241 2.16121 2.47898 2.55437 2.62677 3.27558 3.65701 3.84586 3.90782 3.98015 4.11927 4.20028 4.24378 4.47746 4.50594 4.63181 4.67546 4.71264 4.73395 4.81977 4.88233 4.90571 4.99686 5.08298 5.15604 5.31544 5.45480 5.65495 5.71106 5.80741 5.84543 5.98816 6.20063 6.58499 6.68969 7.06060 7.33290 7.81407 8.01287 9.17316 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.003212 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.944679 B = 8714.187183 C = 9579.043495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.017 3.983 3 C -0.187 4.187 4 C -0.268 4.268 5 C 0.584 3.416 6 O -0.589 6.589 7 N -0.716 5.716 8 C 0.159 3.841 9 C -0.158 4.158 10 C -0.136 4.136 11 C 0.177 3.823 12 N -0.757 5.757 13 C -0.239 4.239 14 H 0.059 0.941 15 C -0.063 4.063 16 N -0.983 5.983 17 Si 0.957 3.043 18 H -0.278 1.278 19 H -0.293 1.293 20 H -0.253 1.253 21 C 0.102 3.898 22 C -0.091 4.091 23 N -0.536 5.536 24 H 0.430 0.570 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.153 0.847 29 H 0.410 0.590 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.129 0.871 33 H 0.116 0.884 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.367 0.633 37 H 0.259 0.741 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.287 -29.710 -10.522 31.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C -0.211 4.211 4 C -0.278 4.278 5 C 0.375 3.625 6 O -0.472 6.472 7 N -0.367 5.367 8 C 0.035 3.965 9 C -0.177 4.177 10 C -0.156 4.156 11 C 0.051 3.949 12 N -0.403 5.403 13 C -0.370 4.370 14 H 0.077 0.923 15 C -0.254 4.254 16 N -0.633 5.633 17 Si 0.783 3.217 18 H -0.204 1.204 19 H -0.219 1.219 20 H -0.177 1.177 21 C -0.017 4.017 22 C -0.148 4.148 23 N -0.134 5.134 24 H 0.270 0.730 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.170 0.830 29 H 0.246 0.754 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.147 0.853 33 H 0.134 0.866 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.200 0.800 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.628 -29.955 -10.601 32.111 hybrid contribution -0.497 0.011 0.966 1.087 sum -5.125 -29.944 -9.635 31.871 Atomic orbital electron populations 1.20441 0.85253 1.04532 1.03833 1.20696 0.94908 0.85498 1.08103 1.22049 0.90327 0.99079 1.09608 1.20186 0.93019 0.93208 1.21394 1.17706 0.88051 0.81952 0.74799 1.90689 1.29962 1.73064 1.53457 1.45748 1.10331 1.05469 1.75166 1.20225 0.86935 0.87050 1.02248 1.22814 1.01438 0.93575 0.99848 1.23017 0.99343 0.94822 0.98379 1.19868 0.95932 0.91902 0.87164 1.42681 1.75655 1.07967 1.13966 1.19071 1.32299 0.87025 0.98597 0.92338 1.25524 1.01208 0.98432 1.00278 1.69885 1.49165 1.19535 1.24739 0.85385 0.77374 0.79706 0.79189 1.20413 1.21940 1.17734 1.20512 0.86142 0.94013 1.01058 1.20548 0.93447 0.97087 1.03741 1.41527 1.04403 1.09713 1.57767 0.72959 0.89780 0.90022 0.89515 0.82954 0.75394 0.91952 0.90435 0.85350 0.86584 0.94645 0.94647 0.80006 0.93203 0.90172 0.90297 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.41 71.24 0.74 0.10 16 2 C 0.02 0.25 7.13 40.98 0.29 0.55 16 3 C -0.19 -3.62 10.45 23.62 0.25 -3.37 16 4 C -0.27 -6.36 6.29 -19.04 -0.12 -6.48 16 5 C 0.58 16.34 7.81 86.61 0.68 17.02 16 6 O -0.59 -19.58 14.81 -4.10 -0.06 -19.64 16 7 N -0.72 -17.48 5.54 -470.28 -2.61 -20.08 16 8 C 0.16 3.87 6.11 85.63 0.52 4.39 16 9 C -0.16 -3.89 9.24 25.64 0.24 -3.65 16 10 C -0.14 -4.02 9.24 25.64 0.24 -3.79 16 11 C 0.18 6.71 6.70 85.64 0.57 7.28 16 12 N -0.76 -36.03 5.40 -347.19 -1.87 -37.90 16 13 C -0.24 -13.88 10.47 84.03 0.88 -13.00 16 14 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 15 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 16 N -0.98 -63.51 13.97 21.65 0.30 -63.20 16 17 Si 0.96 45.95 27.73 68.60 1.90 47.86 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 20 H -0.25 -11.03 6.52 99.48 0.65 -10.38 16 21 C 0.10 1.95 7.17 41.78 0.30 2.25 16 22 C -0.09 -1.45 9.88 71.24 0.70 -0.75 16 23 N -0.54 -6.94 5.90 -171.06 -1.01 -7.95 16 24 H 0.43 2.42 8.96 -92.71 -0.83 1.59 16 25 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.15 2.55 7.70 -2.91 -0.02 2.52 16 29 H 0.41 8.61 7.59 -92.71 -0.70 7.91 16 30 H 0.06 1.63 7.79 -2.39 -0.02 1.62 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.13 2.91 7.84 -2.91 -0.02 2.88 16 33 H 0.12 3.28 7.84 -2.91 -0.02 3.26 16 34 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.04 1.33 7.79 -2.39 -0.02 1.32 16 36 H 0.37 16.69 5.52 -92.70 -0.51 16.18 16 37 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.68 6.47 -2.39 -0.02 1.66 16 40 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -76.76 341.36 1.38 -75.38 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -1.03 Total: 28.27 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 5.76 Total: -2.73 kcal Atomic # 7 Polarization: -123.95 SS G_CDS: -5.19 Total: -129.14 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.06 Total: -19.64 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.90 Total: 47.86 kcal Total: -76.76 1.38 -75.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716349339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.337 kcal (2) G-P(sol) polarization free energy of solvation -76.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds