Wall clock time and date at job start Mon Mar 30 2020 01:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38671 * 120.78718 * 2 1 4 4 C 1.38180 * 119.16093 * 179.97438 * 3 2 1 5 5 N 1.31891 * 120.76782 * 0.02562 * 4 3 2 6 6 C 1.31861 * 121.72178 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.76588 * 359.73182 * 6 5 4 8 8 C 1.50695 * 120.42362 * 180.26609 * 7 6 5 9 9 C 1.50699 * 109.47396 * 265.27691 * 8 7 6 10 10 O 1.21285 * 120.00040 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99847 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99800 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47099 * 34.99964 * 12 11 9 14 14 C 1.53006 * 109.46931 * 274.99791 * 12 11 9 15 15 C 1.53000 * 109.47151 * 155.00097 * 12 11 9 16 16 N 1.46498 * 109.46793 * 305.00051 * 15 12 11 17 17 C 1.36938 * 119.99801 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00114 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00170 * 179.97438 * 17 16 15 20 20 N 1.31623 * 119.99785 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00249 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47085 * 89.99722 * 21 19 17 23 23 H 1.48504 * 109.47045 * 209.99889 * 21 19 17 24 24 H 1.48502 * 109.46650 * 329.99727 * 21 19 17 25 25 H 1.09002 * 109.47152 * 90.00212 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00313 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00294 * 1 2 3 28 28 H 1.07995 * 120.42093 * 359.95305 * 3 2 1 29 29 H 1.08001 * 119.62114 * 179.97438 * 4 3 2 30 30 H 1.07996 * 119.61320 * 179.97438 * 6 5 4 31 31 H 1.09001 * 109.46846 * 25.27567 * 8 7 6 32 32 H 1.09001 * 109.47395 * 145.26999 * 8 7 6 33 33 H 0.96998 * 120.00219 * 359.97438 * 11 9 8 34 34 H 1.08993 * 109.47307 * 300.00212 * 14 12 11 35 35 H 1.09000 * 109.46539 * 60.00282 * 14 12 11 36 36 H 1.08996 * 109.46800 * 179.97438 * 14 12 11 37 37 H 1.09003 * 109.47129 * 65.00029 * 15 12 11 38 38 H 1.09002 * 109.47079 * 184.99979 * 15 12 11 39 39 H 0.96993 * 120.00499 * 359.97438 * 16 15 12 40 40 H 0.97002 * 119.99615 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0001 0.0005 6 6 3.5983 -1.1516 0.0005 7 6 2.2167 -1.1909 0.0061 8 6 1.4909 -2.5116 0.0121 9 6 1.1408 -2.8988 -1.4016 10 8 1.4498 -2.1736 -2.3233 11 7 0.4842 -4.0512 -1.6417 12 6 0.1434 -4.4274 -3.0159 13 1 0.9340 -4.0972 -3.6897 14 6 -1.1764 -3.7634 -3.4140 15 6 -0.0027 -5.9477 -3.1072 16 7 1.2197 -6.5861 -2.6128 17 6 1.3213 -7.9517 -2.5988 18 1 0.5001 -8.5579 -2.9518 19 6 2.4796 -8.5567 -2.1308 20 7 3.4805 -7.8179 -1.7011 21 14 2.6180 -10.4195 -2.1110 22 1 3.1905 -10.8871 -3.3989 23 1 3.5032 -10.8383 -0.9946 24 1 1.2700 -11.0139 -1.9237 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6967 2.1377 -0.0008 29 1 4.1583 2.0754 0.0001 30 1 4.1586 -2.0749 0.0001 31 1 2.1320 -3.2765 0.4502 32 1 0.5780 -2.4218 0.6009 33 1 0.2374 -4.6314 -0.9046 34 1 -1.9669 -4.0936 -2.7402 35 1 -1.0722 -2.6804 -3.3490 36 1 -1.4297 -4.0430 -4.4366 37 1 -0.8505 -6.2682 -2.5018 38 1 -0.1683 -6.2350 -4.1455 39 1 1.9573 -6.0417 -2.2961 40 1 4.2901 -8.2407 -1.3744 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716399081.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:43 Heat of formation + Delta-G solvation = -2.237768 kcal Electronic energy + Delta-G solvation = -21251.345931 eV Core-core repulsion = 18065.923304 eV Total energy + Delta-G solvation = -3185.422627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.53939 -39.21970 -36.22783 -34.37653 -33.64179 -32.54331 -31.31401 -30.01906 -28.41987 -27.29495 -25.68998 -23.12279 -22.63803 -22.00237 -20.66450 -20.01625 -17.31895 -16.81801 -16.76420 -16.45796 -15.93430 -15.00153 -14.85938 -14.60561 -14.26051 -13.72718 -13.57063 -13.37741 -13.14906 -13.00121 -12.81785 -12.71656 -12.40963 -12.27477 -12.21953 -11.77022 -11.57246 -11.37754 -10.93478 -10.84153 -10.48958 -10.07769 -9.77335 -9.70577 -9.42760 -9.39589 -8.96222 -8.89329 -8.70242 -6.99382 -5.81271 -3.11179 1.12033 1.27662 2.92082 3.40439 3.45271 3.46768 3.47530 3.89532 4.42123 4.54663 4.62953 4.65365 4.84806 4.87916 5.07916 5.28054 5.29412 5.33611 5.38552 5.48655 5.50368 5.52323 5.60552 5.63333 5.78906 5.89698 5.99291 6.05004 6.07180 6.16197 6.32626 6.36526 6.45885 6.67610 6.73309 6.93574 7.65068 7.85787 8.01815 8.36749 8.54201 9.48640 10.04292 10.39795 11.41083 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021225 B = 0.004085 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.903793 B = 6852.819304 C = 7821.257880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.028 4.028 3 C -0.178 4.178 4 C 0.095 3.905 5 N -0.489 5.489 6 C 0.117 3.883 7 C -0.112 4.112 8 C -0.104 4.104 9 C 0.518 3.482 10 O -0.542 6.542 11 N -0.711 5.711 12 C 0.133 3.867 13 H 0.086 0.914 14 C -0.156 4.156 15 C 0.144 3.856 16 N -0.732 5.732 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.131 0.869 29 H 0.152 0.848 30 H 0.156 0.844 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.404 0.596 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.024 0.976 38 H 0.033 0.967 39 H 0.386 0.614 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.120 16.088 5.513 18.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.036 4.036 3 C -0.197 4.197 4 C -0.062 4.062 5 N -0.197 5.197 6 C -0.040 4.040 7 C -0.114 4.114 8 C -0.144 4.144 9 C 0.303 3.697 10 O -0.419 6.419 11 N -0.362 5.362 12 C 0.029 3.971 13 H 0.104 0.896 14 C -0.215 4.215 15 C 0.016 3.984 16 N -0.377 5.377 17 C -0.375 4.375 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.149 0.851 29 H 0.169 0.831 30 H 0.173 0.827 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.239 0.761 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.050 0.950 39 H 0.220 0.780 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.023 16.426 4.824 18.504 hybrid contribution -0.602 -1.227 0.389 1.421 sum -7.625 15.199 5.213 17.786 Atomic orbital electron populations 1.20865 0.90584 1.02904 1.03143 1.20107 0.96551 0.92491 0.94465 1.21936 0.95636 0.98314 1.03854 1.22690 0.91746 0.96252 0.95505 1.67696 1.41098 0.98429 1.12516 1.22700 0.91016 0.96395 0.93847 1.20179 0.94972 0.94260 1.02024 1.20643 1.02279 0.95634 0.95886 1.20316 0.77421 0.81296 0.90633 1.90695 1.53551 1.51830 1.45859 1.45986 1.58284 1.22117 1.09819 1.21228 0.97061 0.95664 0.83177 0.89630 1.22091 0.97120 1.00773 1.01536 1.20979 0.91193 0.88422 0.97777 1.42354 1.14546 1.04119 1.76647 1.19219 0.99827 0.82810 1.35683 0.91153 1.24748 0.96422 0.97843 1.01714 1.69665 1.05824 1.33926 1.48488 0.86191 0.77320 0.85426 0.77227 1.21691 1.21744 1.20759 0.90235 0.91224 0.91013 0.85112 0.83073 0.82651 0.87185 0.87868 0.76125 0.92602 0.92562 0.91724 0.95803 0.94964 0.77996 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.68 36.01 0.35 -0.75 16 2 C -0.03 -0.33 5.92 -104.31 -0.62 -0.95 16 3 C -0.18 -1.95 9.82 -39.44 -0.39 -2.33 16 4 C 0.09 1.14 11.18 -17.55 -0.20 0.94 16 5 N -0.49 -7.18 10.36 -13.25 -0.14 -7.31 16 6 C 0.12 1.69 10.84 -17.55 -0.19 1.50 16 7 C -0.11 -1.48 4.39 -104.48 -0.46 -1.94 16 8 C -0.10 -1.25 5.39 -29.04 -0.16 -1.41 16 9 C 0.52 8.01 7.79 -10.99 -0.09 7.92 16 10 O -0.54 -10.32 15.70 5.55 0.09 -10.24 16 11 N -0.71 -10.78 4.52 -53.80 -0.24 -11.02 16 12 C 0.13 2.19 2.73 -67.93 -0.19 2.00 16 13 H 0.09 1.63 7.58 -51.93 -0.39 1.23 16 14 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 15 C 0.14 2.75 5.82 -4.04 -0.02 2.72 16 16 N -0.73 -17.83 5.43 -59.91 -0.33 -18.16 16 17 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 21 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 27 H 0.07 0.59 6.16 -51.93 -0.32 0.27 16 28 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 29 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 30 H 0.16 2.11 8.06 -52.49 -0.42 1.68 16 31 H 0.11 1.24 8.06 -51.93 -0.42 0.83 16 32 H 0.10 0.94 6.29 -51.93 -0.33 0.62 16 33 H 0.40 5.68 8.60 -40.82 -0.35 5.33 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.39 10.03 7.33 -40.82 -0.30 9.73 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 339.77 15.07 5.12 5.12 Total: -1.00 -33.44 339.77 -7.52 -40.97 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -5.88 Total: 11.77 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -1.85 Total: -1.22 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: 0.02 Total: -63.39 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.44 -7.52 -40.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716399081.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.730 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds