Wall clock time and date at job start Mon Mar 30 2020 01:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38671 * 120.78718 * 2 1 4 4 C 1.38180 * 119.16093 * 179.97438 * 3 2 1 5 5 N 1.31891 * 120.76782 * 0.02562 * 4 3 2 6 6 C 1.31861 * 121.72178 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.76588 * 359.73182 * 6 5 4 8 8 C 1.50695 * 120.42362 * 180.26609 * 7 6 5 9 9 C 1.50699 * 109.47396 * 265.27691 * 8 7 6 10 10 O 1.21285 * 120.00040 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99847 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99800 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47099 * 34.99964 * 12 11 9 14 14 C 1.53006 * 109.46931 * 274.99791 * 12 11 9 15 15 C 1.53000 * 109.47151 * 155.00097 * 12 11 9 16 16 N 1.46498 * 109.46793 * 305.00051 * 15 12 11 17 17 C 1.36938 * 119.99801 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00114 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00170 * 179.97438 * 17 16 15 20 20 N 1.31623 * 119.99785 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00249 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47085 * 89.99722 * 21 19 17 23 23 H 1.48504 * 109.47045 * 209.99889 * 21 19 17 24 24 H 1.48502 * 109.46650 * 329.99727 * 21 19 17 25 25 H 1.09002 * 109.47152 * 90.00212 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00313 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00294 * 1 2 3 28 28 H 1.07995 * 120.42093 * 359.95305 * 3 2 1 29 29 H 1.08001 * 119.62114 * 179.97438 * 4 3 2 30 30 H 1.07996 * 119.61320 * 179.97438 * 6 5 4 31 31 H 1.09001 * 109.46846 * 25.27567 * 8 7 6 32 32 H 1.09001 * 109.47395 * 145.26999 * 8 7 6 33 33 H 0.96998 * 120.00219 * 359.97438 * 11 9 8 34 34 H 1.08993 * 109.47307 * 300.00212 * 14 12 11 35 35 H 1.09000 * 109.46539 * 60.00282 * 14 12 11 36 36 H 1.08996 * 109.46800 * 179.97438 * 14 12 11 37 37 H 1.09003 * 109.47129 * 65.00029 * 15 12 11 38 38 H 1.09002 * 109.47079 * 184.99979 * 15 12 11 39 39 H 0.96993 * 120.00499 * 359.97438 * 16 15 12 40 40 H 0.97002 * 119.99615 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0001 0.0005 6 6 3.5983 -1.1516 0.0005 7 6 2.2167 -1.1909 0.0061 8 6 1.4909 -2.5116 0.0121 9 6 1.1408 -2.8988 -1.4016 10 8 1.4498 -2.1736 -2.3233 11 7 0.4842 -4.0512 -1.6417 12 6 0.1434 -4.4274 -3.0159 13 1 0.9340 -4.0972 -3.6897 14 6 -1.1764 -3.7634 -3.4140 15 6 -0.0027 -5.9477 -3.1072 16 7 1.2197 -6.5861 -2.6128 17 6 1.3213 -7.9517 -2.5988 18 1 0.5001 -8.5579 -2.9518 19 6 2.4796 -8.5567 -2.1308 20 7 3.4805 -7.8179 -1.7011 21 14 2.6180 -10.4195 -2.1110 22 1 3.1905 -10.8871 -3.3989 23 1 3.5032 -10.8383 -0.9946 24 1 1.2700 -11.0139 -1.9237 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6967 2.1377 -0.0008 29 1 4.1583 2.0754 0.0001 30 1 4.1586 -2.0749 0.0001 31 1 2.1320 -3.2765 0.4502 32 1 0.5780 -2.4218 0.6009 33 1 0.2374 -4.6314 -0.9046 34 1 -1.9669 -4.0936 -2.7402 35 1 -1.0722 -2.6804 -3.3490 36 1 -1.4297 -4.0430 -4.4366 37 1 -0.8505 -6.2682 -2.5018 38 1 -0.1683 -6.2350 -4.1455 39 1 1.9573 -6.0417 -2.2961 40 1 4.2901 -8.2407 -1.3744 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716399081.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:43 Heat of formation + Delta-G solvation = -25.337933 kcal Electronic energy + Delta-G solvation = -21252.347629 eV Core-core repulsion = 18065.923304 eV Total energy + Delta-G solvation = -3186.424326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.55296 -40.41815 -37.70582 -35.47951 -35.28703 -33.56301 -32.91313 -31.54988 -29.31244 -28.22332 -27.40053 -24.60594 -23.93970 -23.05969 -21.92770 -21.25415 -19.22175 -18.10306 -17.74918 -17.46810 -17.16071 -16.63603 -16.01960 -15.84680 -15.49629 -15.23796 -15.11838 -14.68925 -14.18193 -13.95593 -13.88669 -13.70274 -13.62978 -13.54121 -13.44804 -13.07940 -12.79617 -12.73041 -12.57375 -12.23028 -12.14643 -11.88636 -11.68587 -11.03267 -10.90085 -10.39426 -10.31495 -9.99914 -9.89261 -9.00835 -7.94209 -5.23706 0.16979 0.34575 1.48969 1.50319 1.58607 1.70485 2.29592 2.56737 2.90230 3.40459 3.50712 3.70151 3.78904 3.84575 3.94830 4.00020 4.04713 4.14177 4.32247 4.48595 4.49479 4.54686 4.61842 4.73501 4.78031 4.81916 4.88449 4.90151 4.95608 5.05990 5.14438 5.22277 5.32337 5.44317 5.51295 5.62858 5.83256 6.26736 6.64310 7.05357 7.32757 7.34260 8.07958 8.31537 9.28820 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021225 B = 0.004085 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.903793 B = 6852.819304 C = 7821.257880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.037 4.037 3 C -0.174 4.174 4 C 0.083 3.917 5 N -0.520 5.520 6 C 0.090 3.910 7 C -0.125 4.125 8 C -0.096 4.096 9 C 0.517 3.483 10 O -0.581 6.581 11 N -0.707 5.707 12 C 0.141 3.859 13 H 0.053 0.947 14 C -0.144 4.144 15 C 0.145 3.855 16 N -0.744 5.744 17 C -0.245 4.245 18 H 0.079 0.921 19 C -0.072 4.072 20 N -0.968 5.968 21 Si 0.972 3.028 22 H -0.292 1.292 23 H -0.297 1.297 24 H -0.266 1.266 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.165 0.835 29 H 0.179 0.821 30 H 0.148 0.852 31 H 0.114 0.886 32 H 0.138 0.862 33 H 0.411 0.589 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.034 0.966 39 H 0.374 0.626 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.457 16.619 6.090 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.045 4.045 3 C -0.193 4.193 4 C -0.073 4.073 5 N -0.229 5.229 6 C -0.067 4.067 7 C -0.127 4.127 8 C -0.136 4.136 9 C 0.304 3.696 10 O -0.462 6.462 11 N -0.358 5.358 12 C 0.035 3.965 13 H 0.071 0.929 14 C -0.203 4.203 15 C 0.019 3.981 16 N -0.387 5.387 17 C -0.377 4.377 18 H 0.097 0.903 19 C -0.265 4.265 20 N -0.619 5.619 21 Si 0.801 3.199 22 H -0.219 1.219 23 H -0.223 1.223 24 H -0.191 1.191 25 H 0.089 0.911 26 H 0.113 0.887 27 H 0.101 0.899 28 H 0.183 0.817 29 H 0.196 0.804 30 H 0.165 0.835 31 H 0.132 0.868 32 H 0.155 0.845 33 H 0.247 0.753 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.206 0.794 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.420 16.943 5.398 20.123 hybrid contribution 0.084 -1.312 0.160 1.324 sum -9.336 15.631 5.557 19.036 Atomic orbital electron populations 1.20915 0.88507 1.04771 1.03002 1.20541 0.98160 0.92262 0.93573 1.22341 0.95323 0.99526 1.02120 1.23243 0.92868 0.96358 0.94866 1.67656 1.42247 0.99284 1.13736 1.22753 0.91968 0.96438 0.95511 1.20309 0.94591 0.95375 1.02457 1.20647 1.03748 0.95299 0.93864 1.20859 0.76394 0.80693 0.91626 1.90674 1.55029 1.53057 1.47397 1.45956 1.58155 1.22187 1.09519 1.21050 0.97885 0.94095 0.83433 0.92869 1.21983 0.95488 1.00126 1.02687 1.21134 0.89523 0.89792 0.97695 1.42541 1.15930 1.03442 1.76808 1.19640 0.99740 0.84254 1.34053 0.90310 1.25534 0.96433 1.02054 1.02434 1.69825 1.06284 1.35500 1.50251 0.85167 0.77663 0.80496 0.76563 1.21930 1.22337 1.19078 0.91144 0.88690 0.89938 0.81717 0.80381 0.83489 0.86807 0.84463 0.75317 0.90561 0.92896 0.90576 0.93909 0.94806 0.79369 0.94107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.68 71.24 0.69 -1.13 16 2 C -0.04 -0.83 5.92 -19.66 -0.12 -0.94 16 3 C -0.17 -3.46 9.82 22.36 0.22 -3.24 16 4 C 0.08 1.92 11.18 84.67 0.95 2.86 16 5 N -0.52 -15.59 10.36 -195.84 -2.03 -17.62 16 6 C 0.09 2.69 10.84 84.68 0.92 3.61 16 7 C -0.12 -3.28 4.39 -19.78 -0.09 -3.36 16 8 C -0.10 -2.23 5.39 29.10 0.16 -2.07 16 9 C 0.52 15.88 7.79 87.66 0.68 16.56 16 10 O -0.58 -22.49 15.70 -3.05 -0.05 -22.54 16 11 N -0.71 -20.96 4.52 -442.51 -2.00 -22.95 16 12 C 0.14 4.52 2.73 44.99 0.12 4.64 16 13 H 0.05 2.07 7.58 -2.39 -0.02 2.05 16 14 C -0.14 -3.53 9.48 71.98 0.68 -2.85 16 15 C 0.15 5.36 5.82 86.38 0.50 5.86 16 16 N -0.74 -36.17 5.43 -343.45 -1.87 -38.03 16 17 C -0.25 -13.20 9.99 84.03 0.84 -12.36 16 18 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 19 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 20 N -0.97 -58.40 13.06 21.65 0.28 -58.12 16 21 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 23 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.09 1.01 8.10 -2.39 -0.02 0.99 16 27 H 0.08 1.10 6.16 -2.38 -0.01 1.08 16 28 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 29 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 31 H 0.11 2.57 8.06 -2.39 -0.02 2.55 16 32 H 0.14 2.19 6.29 -2.39 -0.01 2.17 16 33 H 0.41 11.06 8.60 -92.71 -0.80 10.26 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.37 19.79 7.33 -92.71 -0.68 19.11 16 40 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -73.03 339.77 1.97 -71.06 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: -0.42 Total: 36.98 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 6.03 Total: 4.00 kcal Atomic # 7 Polarization: -131.11 SS G_CDS: -5.61 Total: -136.72 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.05 Total: -22.54 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -73.03 1.97 -71.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716399081.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.718 kcal (2) G-P(sol) polarization free energy of solvation -73.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds