Wall clock time and date at job start Mon Mar 30 2020 01:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38606 * 120.32507 * 2 1 4 4 N 1.31499 * 120.89988 * 180.02562 * 3 2 1 5 5 C 1.32745 * 121.64356 * 359.97366 * 4 3 2 6 6 C 1.48174 * 119.72070 * 179.97438 * 5 4 3 7 7 O 1.21511 * 119.99834 * 179.97438 * 6 5 4 8 8 N 1.34779 * 119.99811 * 359.97438 * 6 5 4 9 9 C 1.46500 * 119.99741 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47175 * 35.00237 * 9 8 6 11 11 C 1.53006 * 109.46998 * 275.00368 * 9 8 6 12 12 C 1.52997 * 109.47204 * 155.00342 * 9 8 6 13 13 N 1.46498 * 109.47113 * 305.00267 * 12 9 8 14 14 C 1.36934 * 120.00312 * 179.97438 * 13 12 9 15 15 H 1.07995 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00307 * 179.97438 * 14 13 12 17 17 N 1.31621 * 120.00086 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00046 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47197 * 90.00158 * 18 16 14 20 20 H 1.48504 * 109.47165 * 209.99911 * 18 16 14 21 21 H 1.48497 * 109.47030 * 329.99946 * 18 16 14 22 22 C 1.39265 * 120.55488 * 0.25320 * 5 4 3 23 23 C 1.38581 * 120.32558 * 180.02562 * 2 1 3 24 24 C 1.50698 * 120.75738 * 359.97438 * 23 2 1 25 25 H 1.09001 * 109.47153 * 90.00061 * 1 2 3 26 26 H 1.08998 * 109.47350 * 210.00273 * 1 2 3 27 27 H 1.09003 * 109.47084 * 330.00372 * 1 2 3 28 28 H 1.07998 * 119.54936 * 0.02562 * 3 2 1 29 29 H 0.96997 * 120.00149 * 0.02562 * 8 6 5 30 30 H 1.09001 * 109.46998 * 179.97438 * 11 9 8 31 31 H 1.09000 * 109.47050 * 299.99945 * 11 9 8 32 32 H 1.09001 * 109.46801 * 60.00058 * 11 9 8 33 33 H 1.08998 * 109.47097 * 64.99664 * 12 9 8 34 34 H 1.09002 * 109.47223 * 184.99845 * 12 9 8 35 35 H 0.97004 * 120.00154 * 359.97438 * 13 12 9 36 36 H 0.96994 * 120.00308 * 179.97438 * 17 16 14 37 37 H 1.08007 * 120.46818 * 179.71887 * 22 5 4 38 38 H 1.09006 * 109.47278 * 89.99501 * 24 23 2 39 39 H 1.08998 * 109.47474 * 209.99743 * 24 23 2 40 40 H 1.09004 * 109.46978 * 330.00170 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2096 -0.0005 5 6 4.2294 0.0866 -0.0005 6 6 5.7098 0.1511 -0.0017 7 8 6.3626 -0.8737 -0.0012 8 7 6.3321 1.3466 -0.0032 9 6 7.7957 1.4104 -0.0049 10 1 8.1947 0.5849 -0.5943 11 6 8.3123 1.3080 1.4316 12 6 8.2476 2.7383 -0.6159 13 7 7.6547 2.8903 -1.9469 14 6 7.9183 4.0098 -2.6902 15 1 8.5630 4.7808 -2.2950 16 6 7.3569 4.1535 -3.9515 17 7 6.5716 3.2136 -4.4334 18 14 7.7172 5.6803 -4.9657 19 1 8.9224 5.4466 -5.8011 20 1 6.5565 5.9769 -5.8433 21 1 7.9589 6.8312 -4.0589 22 6 3.5923 -1.1518 -0.0053 23 6 2.2067 -1.1962 -0.0005 24 6 1.4780 -2.5153 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6647 2.1305 0.0004 29 1 5.8110 2.1647 -0.0032 30 1 9.4013 1.3550 1.4303 31 1 7.9133 2.1336 2.0210 32 1 7.9904 0.3619 1.8669 33 1 7.9238 3.5607 0.0220 34 1 9.3344 2.7490 -0.6989 35 1 7.0753 2.1980 -2.3017 36 1 6.1790 3.3142 -5.3146 37 1 4.1695 -2.0647 -0.0098 38 1 1.3018 -2.8331 -1.0283 39 1 2.0815 -3.2638 0.5128 40 1 0.5234 -2.4030 0.5137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716405868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:46 Heat of formation + Delta-G solvation = -2.137891 kcal Electronic energy + Delta-G solvation = -21154.186073 eV Core-core repulsion = 17968.767777 eV Total energy + Delta-G solvation = -3185.418296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.65089 -38.99367 -36.10992 -34.72627 -33.55193 -32.47256 -31.22073 -29.90204 -28.51941 -27.20972 -25.62733 -23.36054 -22.82775 -22.44178 -20.62876 -19.87938 -17.69105 -17.10075 -16.74951 -15.63498 -15.25262 -15.10442 -14.91229 -14.55507 -14.29375 -13.62469 -13.60398 -13.25368 -13.20086 -13.10396 -12.85434 -12.67576 -12.29192 -12.16681 -12.12600 -12.02617 -11.66446 -11.54396 -10.87509 -10.78464 -10.42704 -10.02445 -9.99054 -9.69678 -9.53178 -9.37082 -8.99367 -8.86910 -8.58666 -6.90676 -5.72712 -3.02530 0.69940 1.19239 2.94661 3.43725 3.46373 3.50471 3.52350 3.97108 4.27115 4.52243 4.61002 4.67877 4.73136 4.76992 5.20691 5.23152 5.29977 5.33504 5.40260 5.45791 5.54718 5.57670 5.59709 5.71028 5.76896 5.79335 5.95056 6.07085 6.15294 6.18572 6.24482 6.45182 6.53669 6.59976 6.75217 6.99848 7.72195 7.72781 8.04867 8.44671 8.56258 9.56388 10.13180 10.48480 11.49654 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.004622 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.229585 B = 6056.651854 C = 7249.883209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.125 4.125 3 C 0.103 3.897 4 N -0.451 5.451 5 C 0.083 3.917 6 C 0.571 3.429 7 O -0.545 6.545 8 N -0.688 5.688 9 C 0.130 3.870 10 H 0.088 0.912 11 C -0.157 4.157 12 C 0.145 3.855 13 N -0.731 5.731 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.930 5.930 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.111 4.111 23 C -0.056 4.056 24 C -0.117 4.117 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.161 0.839 29 H 0.415 0.585 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.025 0.975 34 H 0.034 0.966 35 H 0.386 0.614 36 H 0.255 0.745 37 H 0.146 0.854 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.819 -8.706 12.616 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.127 4.127 3 C -0.057 4.057 4 N -0.162 5.162 5 C -0.055 4.055 6 C 0.355 3.645 7 O -0.423 6.423 8 N -0.338 5.338 9 C 0.026 3.974 10 H 0.106 0.894 11 C -0.216 4.216 12 C 0.017 3.983 13 N -0.376 5.376 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.132 4.132 23 C -0.064 4.064 24 C -0.173 4.173 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.178 0.822 29 H 0.252 0.748 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.220 0.780 36 H 0.064 0.936 37 H 0.164 0.836 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.765 -8.459 12.560 18.580 hybrid contribution -0.690 0.325 -0.893 1.174 sum -11.455 -8.134 11.667 18.262 Atomic orbital electron populations 1.20803 0.90113 1.03208 1.02880 1.20991 0.97632 0.93706 1.00367 1.22697 0.89390 0.97556 0.96033 1.67589 1.08574 1.30232 1.09755 1.21195 0.94493 0.89511 1.00259 1.17835 0.85684 0.84179 0.76778 1.90736 1.65917 1.34307 1.51367 1.45854 1.07656 1.08555 1.71719 1.21326 0.79204 1.00451 0.96450 0.89403 1.22100 1.01271 1.01880 0.96312 1.20980 0.96697 0.92507 0.88153 1.42360 1.57968 1.23551 1.13755 1.19218 1.24098 0.96980 0.96996 0.91123 1.24749 1.00062 0.98299 0.97710 1.69680 1.36040 1.33799 1.18360 0.86187 0.77174 0.82589 0.80202 1.21754 1.21830 1.20747 1.21976 0.94070 0.99122 0.98015 1.20152 0.93274 0.95738 0.97208 1.20861 1.00262 0.93085 1.03085 0.90529 0.90975 0.91002 0.82206 0.74842 0.91535 0.92493 0.92448 0.95712 0.94784 0.77967 0.93562 0.83614 0.90332 0.90914 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.65 36.00 0.35 -0.45 16 2 C -0.12 -1.36 5.91 -104.36 -0.62 -1.97 16 3 C 0.10 1.33 10.86 -17.56 -0.19 1.14 16 4 N -0.45 -7.28 9.54 -9.80 -0.09 -7.37 16 5 C 0.08 1.39 6.75 -83.01 -0.56 0.83 16 6 C 0.57 10.74 7.78 -12.18 -0.09 10.64 16 7 O -0.55 -11.20 15.99 5.36 0.09 -11.11 16 8 N -0.69 -12.69 4.51 -54.64 -0.25 -12.94 16 9 C 0.13 2.36 2.73 -67.93 -0.19 2.17 16 10 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 11 C -0.16 -2.29 9.48 37.16 0.35 -1.94 16 12 C 0.14 2.96 5.82 -4.04 -0.02 2.94 16 13 N -0.73 -18.99 5.43 -59.91 -0.33 -19.32 16 14 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 15 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 18 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.11 -1.57 9.34 -39.05 -0.36 -1.94 16 23 C -0.06 -0.64 5.91 -104.35 -0.62 -1.25 16 24 C -0.12 -0.90 9.67 36.00 0.35 -0.55 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.41 6.06 -51.93 -0.31 0.10 16 27 H 0.07 0.43 8.09 -51.93 -0.42 0.00 16 28 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.41 7.77 7.93 -40.82 -0.32 7.44 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.39 10.80 7.33 -40.82 -0.30 10.50 16 36 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.15 1.97 7.64 -52.48 -0.40 1.57 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 40 H 0.07 0.44 6.07 -51.93 -0.32 0.13 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -33.72 338.80 -7.44 -41.16 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -5.82 Total: 12.77 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -1.85 Total: 2.14 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: 0.06 Total: -67.76 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.72 -7.44 -41.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716405868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.021 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds