Wall clock time and date at job start Mon Mar 30 2020 01:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38606 * 120.32507 * 2 1 4 4 N 1.31499 * 120.89988 * 180.02562 * 3 2 1 5 5 C 1.32745 * 121.64356 * 359.97366 * 4 3 2 6 6 C 1.48174 * 119.72070 * 179.97438 * 5 4 3 7 7 O 1.21511 * 119.99834 * 179.97438 * 6 5 4 8 8 N 1.34779 * 119.99811 * 359.97438 * 6 5 4 9 9 C 1.46500 * 119.99741 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47175 * 35.00237 * 9 8 6 11 11 C 1.53006 * 109.46998 * 275.00368 * 9 8 6 12 12 C 1.52997 * 109.47204 * 155.00342 * 9 8 6 13 13 N 1.46498 * 109.47113 * 305.00267 * 12 9 8 14 14 C 1.36934 * 120.00312 * 179.97438 * 13 12 9 15 15 H 1.07995 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00307 * 179.97438 * 14 13 12 17 17 N 1.31621 * 120.00086 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00046 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47197 * 90.00158 * 18 16 14 20 20 H 1.48504 * 109.47165 * 209.99911 * 18 16 14 21 21 H 1.48497 * 109.47030 * 329.99946 * 18 16 14 22 22 C 1.39265 * 120.55488 * 0.25320 * 5 4 3 23 23 C 1.38581 * 120.32558 * 180.02562 * 2 1 3 24 24 C 1.50698 * 120.75738 * 359.97438 * 23 2 1 25 25 H 1.09001 * 109.47153 * 90.00061 * 1 2 3 26 26 H 1.08998 * 109.47350 * 210.00273 * 1 2 3 27 27 H 1.09003 * 109.47084 * 330.00372 * 1 2 3 28 28 H 1.07998 * 119.54936 * 0.02562 * 3 2 1 29 29 H 0.96997 * 120.00149 * 0.02562 * 8 6 5 30 30 H 1.09001 * 109.46998 * 179.97438 * 11 9 8 31 31 H 1.09000 * 109.47050 * 299.99945 * 11 9 8 32 32 H 1.09001 * 109.46801 * 60.00058 * 11 9 8 33 33 H 1.08998 * 109.47097 * 64.99664 * 12 9 8 34 34 H 1.09002 * 109.47223 * 184.99845 * 12 9 8 35 35 H 0.97004 * 120.00154 * 359.97438 * 13 12 9 36 36 H 0.96994 * 120.00308 * 179.97438 * 17 16 14 37 37 H 1.08007 * 120.46818 * 179.71887 * 22 5 4 38 38 H 1.09006 * 109.47278 * 89.99501 * 24 23 2 39 39 H 1.08998 * 109.47474 * 209.99743 * 24 23 2 40 40 H 1.09004 * 109.46978 * 330.00170 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2096 -0.0005 5 6 4.2294 0.0866 -0.0005 6 6 5.7098 0.1511 -0.0017 7 8 6.3626 -0.8737 -0.0012 8 7 6.3321 1.3466 -0.0032 9 6 7.7957 1.4104 -0.0049 10 1 8.1947 0.5849 -0.5943 11 6 8.3123 1.3080 1.4316 12 6 8.2476 2.7383 -0.6159 13 7 7.6547 2.8903 -1.9469 14 6 7.9183 4.0098 -2.6902 15 1 8.5630 4.7808 -2.2950 16 6 7.3569 4.1535 -3.9515 17 7 6.5716 3.2136 -4.4334 18 14 7.7172 5.6803 -4.9657 19 1 8.9224 5.4466 -5.8011 20 1 6.5565 5.9769 -5.8433 21 1 7.9589 6.8312 -4.0589 22 6 3.5923 -1.1518 -0.0053 23 6 2.2067 -1.1962 -0.0005 24 6 1.4780 -2.5153 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6647 2.1305 0.0004 29 1 5.8110 2.1647 -0.0032 30 1 9.4013 1.3550 1.4303 31 1 7.9133 2.1336 2.0210 32 1 7.9904 0.3619 1.8669 33 1 7.9238 3.5607 0.0220 34 1 9.3344 2.7490 -0.6989 35 1 7.0753 2.1980 -2.3017 36 1 6.1790 3.3142 -5.3146 37 1 4.1695 -2.0647 -0.0098 38 1 1.3018 -2.8331 -1.0283 39 1 2.0815 -3.2638 0.5128 40 1 0.5234 -2.4030 0.5137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716405868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:45 Heat of formation + Delta-G solvation = -25.720043 kcal Electronic energy + Delta-G solvation = -21155.208672 eV Core-core repulsion = 17968.767777 eV Total energy + Delta-G solvation = -3186.440895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77236 -40.33186 -37.74107 -35.72861 -35.40468 -33.44330 -32.99573 -31.55020 -29.36458 -28.06156 -27.43999 -24.78620 -24.11821 -23.77856 -22.02420 -21.24179 -19.33053 -18.71198 -17.99719 -17.00557 -16.75177 -16.34836 -16.17087 -15.90214 -15.44907 -15.30362 -15.13844 -14.85591 -14.06994 -13.92060 -13.74193 -13.68445 -13.65982 -13.63189 -13.38197 -13.09315 -12.79898 -12.70690 -12.65467 -12.44987 -12.16970 -11.92318 -11.72438 -11.37338 -10.97852 -10.51580 -10.48662 -10.18907 -9.85771 -9.03374 -7.94892 -5.25571 -0.38595 0.21142 1.46811 1.49239 1.57700 1.66703 2.10271 2.55542 2.81960 3.15123 3.39226 3.66633 3.74156 3.81345 3.88177 3.91812 4.00988 4.26102 4.27803 4.47425 4.54007 4.63892 4.69995 4.75224 4.78620 4.83012 4.89635 4.90470 4.99753 5.07694 5.12900 5.21411 5.27064 5.36836 5.48305 5.51940 5.70512 6.24867 6.40956 6.81209 7.12671 7.31584 8.04869 8.28902 9.28566 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.004622 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.229585 B = 6056.651854 C = 7249.883209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.111 4.111 3 C 0.088 3.912 4 N -0.480 5.480 5 C 0.047 3.953 6 C 0.565 3.435 7 O -0.574 6.574 8 N -0.689 5.689 9 C 0.135 3.865 10 H 0.064 0.936 11 C -0.145 4.145 12 C 0.146 3.854 13 N -0.745 5.745 14 C -0.246 4.246 15 H 0.081 0.919 16 C -0.076 4.076 17 N -0.971 5.971 18 Si 0.977 3.023 19 H -0.288 1.288 20 H -0.297 1.297 21 H -0.266 1.266 22 C -0.119 4.119 23 C -0.057 4.057 24 C -0.114 4.114 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.184 0.816 29 H 0.412 0.588 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.045 0.955 35 H 0.372 0.628 36 H 0.250 0.750 37 H 0.143 0.857 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.355 -8.253 13.560 20.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.113 4.113 3 C -0.073 4.073 4 N -0.192 5.192 5 C -0.089 4.089 6 C 0.351 3.649 7 O -0.454 6.454 8 N -0.338 5.338 9 C 0.030 3.970 10 H 0.082 0.918 11 C -0.203 4.203 12 C 0.019 3.981 13 N -0.388 5.388 14 C -0.378 4.378 15 H 0.099 0.901 16 C -0.268 4.268 17 N -0.622 5.622 18 Si 0.806 3.194 19 H -0.215 1.215 20 H -0.223 1.223 21 H -0.190 1.190 22 C -0.140 4.140 23 C -0.065 4.065 24 C -0.170 4.170 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.201 0.799 29 H 0.249 0.751 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.204 0.796 36 H 0.058 0.942 37 H 0.161 0.839 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.267 -7.990 13.554 19.951 hybrid contribution -0.286 0.160 -1.132 1.178 sum -12.553 -7.830 12.422 19.318 Atomic orbital electron populations 1.20936 0.86767 1.05092 1.04011 1.21454 0.99843 0.92604 0.97385 1.23250 0.88567 0.99614 0.95819 1.67487 1.10319 1.30380 1.10968 1.20973 0.93339 0.90878 1.03721 1.18272 0.86956 0.83711 0.75963 1.90691 1.66900 1.34965 1.52867 1.45870 1.07718 1.08501 1.71702 1.21262 0.79291 0.98189 0.98238 0.91780 1.22003 1.02484 1.02210 0.93617 1.21140 0.96866 0.94099 0.85977 1.42561 1.58073 1.22627 1.15570 1.19679 1.23239 0.97580 0.97265 0.90068 1.25620 1.00492 1.01505 0.99159 1.69863 1.37749 1.36046 1.18528 0.85083 0.76527 0.79325 0.78451 1.21522 1.22336 1.19024 1.22105 0.95655 0.98057 0.98221 1.20607 0.92201 0.97883 0.95795 1.20969 1.00998 0.90955 1.04114 0.89458 0.88884 0.89429 0.79891 0.75129 0.89460 0.91077 0.92871 0.94372 0.93738 0.79647 0.94165 0.83892 0.89374 0.90360 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.65 71.23 0.69 -0.47 16 2 C -0.11 -2.18 5.91 -19.70 -0.12 -2.30 16 3 C 0.09 2.19 10.86 84.83 0.92 3.11 16 4 N -0.48 -15.94 9.54 -184.90 -1.76 -17.70 16 5 C 0.05 1.65 6.75 41.89 0.28 1.94 16 6 C 0.56 22.43 7.78 86.88 0.68 23.11 16 7 O -0.57 -24.90 15.99 -3.75 -0.06 -24.96 16 8 N -0.69 -26.49 4.51 -445.09 -2.01 -28.49 16 9 C 0.13 4.97 2.73 44.99 0.12 5.10 16 10 H 0.06 2.67 7.58 -2.39 -0.02 2.65 16 11 C -0.14 -4.11 9.48 71.98 0.68 -3.43 16 12 C 0.15 5.95 5.82 86.38 0.50 6.45 16 13 N -0.75 -39.36 5.43 -343.47 -1.87 -41.22 16 14 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 15 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 16 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 17 N -0.97 -61.63 13.06 21.65 0.28 -61.35 16 18 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 C -0.12 -3.46 9.34 22.61 0.21 -3.25 16 23 C -0.06 -1.22 5.91 -19.69 -0.12 -1.34 16 24 C -0.11 -1.45 9.67 71.24 0.69 -0.76 16 25 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.09 0.62 6.06 -2.39 -0.01 0.61 16 27 H 0.09 0.69 8.09 -2.39 -0.02 0.67 16 28 H 0.18 3.46 8.06 -2.91 -0.02 3.44 16 29 H 0.41 16.11 7.93 -92.71 -0.74 15.37 16 30 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 34 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.37 21.57 7.33 -92.71 -0.68 20.89 16 36 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.14 4.07 7.64 -2.91 -0.02 4.04 16 38 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.08 0.94 8.10 -2.39 -0.02 0.92 16 40 H 0.10 0.77 6.07 -2.39 -0.01 0.76 16 Total: -1.00 -74.94 338.80 2.11 -72.83 By element: Atomic # 1 Polarization: 41.28 SS G_CDS: -0.36 Total: 40.92 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 5.85 Total: 11.01 kcal Atomic # 7 Polarization: -143.41 SS G_CDS: -5.35 Total: -148.76 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.06 Total: -24.96 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -74.94 2.11 -72.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716405868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.111 kcal (2) G-P(sol) polarization free energy of solvation -74.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds