Wall clock time and date at job start Mon Mar 30 2020 01:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38597 * 120.32545 * 2 1 4 4 N 1.31495 * 120.90408 * 179.74925 * 3 2 1 5 5 C 1.32743 * 121.63914 * 0.56308 * 4 3 2 6 6 C 1.48173 * 119.72264 * 179.71530 * 5 4 3 7 7 O 1.21509 * 119.99946 * 173.94323 * 6 5 4 8 8 N 1.34775 * 119.99738 * 353.93797 * 6 5 4 9 9 C 1.46498 * 119.99536 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.47339 * 324.99995 * 9 8 6 11 11 C 1.53004 * 109.47272 * 85.00281 * 9 8 6 12 12 C 1.52999 * 109.46891 * 204.99899 * 9 8 6 13 13 N 1.46502 * 109.47350 * 55.00125 * 12 9 8 14 14 C 1.36929 * 120.00730 * 179.97438 * 13 12 9 15 15 H 1.08006 * 119.99960 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00877 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99467 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00418 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46796 * 90.00636 * 18 16 14 20 20 H 1.48502 * 109.47192 * 209.99780 * 18 16 14 21 21 H 1.48499 * 109.47375 * 330.00207 * 18 16 14 22 22 C 1.39274 * 120.55772 * 359.43827 * 5 4 3 23 23 C 1.50695 * 120.47330 * 180.29593 * 22 5 4 24 24 C 1.38582 * 120.32487 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47055 * 269.97565 * 1 2 3 26 26 H 1.09000 * 109.47481 * 29.97650 * 1 2 3 27 27 H 1.09001 * 109.47698 * 149.97764 * 1 2 3 28 28 H 1.08001 * 119.54890 * 0.04747 * 3 2 1 29 29 H 0.96995 * 120.00114 * 0.02562 * 8 6 5 30 30 H 1.08995 * 109.47184 * 59.99680 * 11 9 8 31 31 H 1.09004 * 109.46922 * 179.97438 * 11 9 8 32 32 H 1.09003 * 109.46654 * 299.99430 * 11 9 8 33 33 H 1.09003 * 109.47371 * 174.99963 * 12 9 8 34 34 H 1.09000 * 109.47692 * 295.00186 * 12 9 8 35 35 H 0.97005 * 119.99811 * 359.97438 * 13 12 9 36 36 H 0.96995 * 119.99949 * 179.97438 * 17 16 14 37 37 H 1.08993 * 109.47379 * 83.27626 * 23 22 5 38 38 H 1.09002 * 109.47179 * 203.28499 * 23 22 5 39 39 H 1.09007 * 109.46656 * 323.27990 * 23 22 5 40 40 H 1.07997 * 120.75394 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1963 0.0000 4 7 3.5216 1.2096 0.0049 5 6 4.2294 0.0866 -0.0010 6 6 5.7097 0.1512 -0.0015 7 8 6.3623 -0.8683 0.1042 8 7 6.3322 1.3407 -0.1192 9 6 7.7958 1.4044 -0.1202 10 1 8.1932 0.6426 0.5506 11 6 8.3161 1.1575 -1.5377 12 6 8.2464 2.7873 0.3547 13 7 7.6502 3.0730 1.6621 14 6 7.9129 4.2613 2.2896 15 1 8.5594 4.9883 1.8206 16 6 7.3476 4.5322 3.5281 17 7 6.5593 3.6464 4.0996 18 14 7.7055 6.1536 4.3838 19 1 6.6926 7.1612 3.9786 20 1 7.6497 5.9598 5.8551 21 1 9.0585 6.6288 3.9980 22 6 3.5923 -1.1519 -0.0010 23 6 4.3976 -2.4256 -0.0011 24 6 2.2067 -1.1962 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6647 2.1305 0.0008 29 1 5.8113 2.1545 -0.2032 30 1 7.9188 1.9192 -2.2084 31 1 9.4051 1.2054 -1.5384 32 1 7.9952 0.1722 -1.8760 33 1 9.3330 2.8064 0.4390 34 1 7.9245 3.5410 -0.3638 35 1 7.0692 2.4202 2.0832 36 1 6.1645 3.8355 4.9651 37 1 4.6935 -2.6684 1.0194 38 1 3.7939 -3.2371 -0.4073 39 1 5.2880 -2.2923 -0.6156 40 1 1.6844 -2.1415 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716446026.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:58 Heat of formation + Delta-G solvation = 1.449494 kcal Electronic energy + Delta-G solvation = -21382.144400 eV Core-core repulsion = 18196.881664 eV Total energy + Delta-G solvation = -3185.262736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.70186 -38.91825 -36.19574 -33.97963 -33.60367 -33.22367 -31.22308 -29.91475 -27.70030 -27.34743 -25.62224 -23.80297 -22.69997 -21.89184 -20.72503 -20.06643 -17.96327 -17.06992 -16.77299 -15.61328 -15.21192 -15.05835 -14.63604 -14.43631 -14.05688 -13.59369 -13.44531 -13.29728 -13.17628 -13.00516 -12.74402 -12.45296 -12.43720 -12.19633 -12.17161 -11.93020 -11.78402 -11.51703 -10.85996 -10.79955 -10.42021 -10.01099 -9.82175 -9.69433 -9.62843 -9.20832 -8.91052 -8.85434 -8.52580 -6.90334 -5.72360 -3.02165 0.70874 1.21945 2.96245 3.45035 3.47372 3.50582 3.52621 3.94259 4.29806 4.60027 4.61969 4.68042 4.83236 4.93984 5.10058 5.30903 5.33908 5.35921 5.52193 5.57470 5.59643 5.67699 5.71020 5.77862 5.83503 6.06477 6.06551 6.10005 6.16093 6.23290 6.34085 6.44474 6.53605 6.65785 6.76509 7.01701 7.72343 7.73830 8.05416 8.44995 8.57188 9.56713 10.13572 10.48874 11.49951 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015534 B = 0.004941 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.010173 B = 5665.115019 C = 6878.228285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.117 4.117 3 C 0.091 3.909 4 N -0.441 5.441 5 C 0.072 3.928 6 C 0.571 3.429 7 O -0.540 6.540 8 N -0.689 5.689 9 C 0.131 3.869 10 H 0.088 0.912 11 C -0.157 4.157 12 C 0.145 3.855 13 N -0.731 5.731 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.930 5.930 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.071 4.071 23 C -0.115 4.115 24 C -0.093 4.093 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.160 0.840 29 H 0.414 0.586 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.034 0.966 34 H 0.024 0.976 35 H 0.386 0.614 36 H 0.254 0.746 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.287 -9.971 -12.030 18.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.119 4.119 3 C -0.070 4.070 4 N -0.151 5.151 5 C -0.066 4.066 6 C 0.356 3.644 7 O -0.418 6.418 8 N -0.339 5.339 9 C 0.026 3.974 10 H 0.106 0.894 11 C -0.216 4.216 12 C 0.017 3.983 13 N -0.376 5.376 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.578 5.578 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.074 4.074 23 C -0.172 4.172 24 C -0.119 4.119 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.177 0.823 29 H 0.251 0.749 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.221 0.779 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.222 -9.708 -11.903 17.915 hybrid contribution -0.871 0.432 0.794 1.256 sum -10.093 -9.275 -11.109 17.644 Atomic orbital electron populations 1.20758 0.90013 1.03181 1.02876 1.21138 0.97683 0.94175 0.98885 1.22684 0.89394 0.97649 0.97235 1.67585 1.08631 1.30081 1.08774 1.21070 0.94516 0.89076 1.01959 1.17812 0.85671 0.84078 0.76845 1.90685 1.66099 1.33908 1.51101 1.45868 1.07623 1.09123 1.71265 1.21315 0.79219 0.99920 0.96918 0.89383 1.22101 1.01254 1.01718 0.96478 1.20979 0.96669 0.91632 0.89067 1.42357 1.57769 1.20027 1.17454 1.19215 1.23997 0.94149 0.99945 0.91145 1.24750 1.00058 0.98256 0.97755 1.69684 1.35864 1.34759 1.17524 0.86189 0.77737 0.83402 0.78837 1.21740 1.21837 1.20765 1.20922 0.94226 0.96367 0.95902 1.21041 1.00241 0.91789 1.04109 1.21375 0.92983 0.98365 0.99180 0.90542 0.90908 0.91276 0.82276 0.74937 0.92551 0.91561 0.92440 0.94817 0.95776 0.77940 0.93569 0.90325 0.92589 0.88210 0.84474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.03 36.00 0.36 -0.43 16 2 C -0.12 -1.27 5.91 -104.36 -0.62 -1.89 16 3 C 0.09 1.19 10.86 -17.56 -0.19 1.00 16 4 N -0.44 -7.23 9.56 -9.80 -0.09 -7.33 16 5 C 0.07 1.20 6.75 -83.01 -0.56 0.64 16 6 C 0.57 10.46 7.71 -12.18 -0.09 10.37 16 7 O -0.54 -10.40 12.97 5.36 0.07 -10.33 16 8 N -0.69 -12.53 4.50 -54.64 -0.25 -12.78 16 9 C 0.13 2.33 2.73 -67.93 -0.19 2.14 16 10 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 11 C -0.16 -2.24 9.48 37.16 0.35 -1.89 16 12 C 0.14 2.94 5.82 -4.04 -0.02 2.92 16 13 N -0.73 -18.94 5.43 -59.91 -0.33 -19.26 16 14 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 15 H 0.07 1.93 7.83 -52.48 -0.41 1.51 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -28.85 13.06 55.49 0.72 -28.12 16 18 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.07 -1.00 5.93 -104.09 -0.62 -1.62 16 23 C -0.12 -1.47 8.74 36.00 0.31 -1.15 16 24 C -0.09 -1.06 9.51 -39.31 -0.37 -1.43 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 27 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.41 7.72 7.95 -40.82 -0.32 7.40 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.39 10.79 7.33 -40.82 -0.30 10.49 16 36 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.55 8.05 -51.93 -0.42 0.13 16 39 H 0.10 1.44 5.85 -51.92 -0.30 1.13 16 40 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 337.56 15.07 5.09 5.09 Total: -1.00 -33.03 337.56 -7.62 -40.64 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -5.93 Total: 13.20 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.88 Total: 1.19 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: 0.06 Total: -67.49 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.07 Total: -10.33 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.03 -7.62 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716446026.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.093 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds