Wall clock time and date at job start Mon Mar 30 2020 01:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38597 * 120.32545 * 2 1 4 4 N 1.31495 * 120.90408 * 179.74925 * 3 2 1 5 5 C 1.32743 * 121.63914 * 0.56308 * 4 3 2 6 6 C 1.48173 * 119.72264 * 179.71530 * 5 4 3 7 7 O 1.21509 * 119.99946 * 173.94323 * 6 5 4 8 8 N 1.34775 * 119.99738 * 353.93797 * 6 5 4 9 9 C 1.46498 * 119.99536 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.47339 * 324.99995 * 9 8 6 11 11 C 1.53004 * 109.47272 * 85.00281 * 9 8 6 12 12 C 1.52999 * 109.46891 * 204.99899 * 9 8 6 13 13 N 1.46502 * 109.47350 * 55.00125 * 12 9 8 14 14 C 1.36929 * 120.00730 * 179.97438 * 13 12 9 15 15 H 1.08006 * 119.99960 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00877 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99467 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00418 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46796 * 90.00636 * 18 16 14 20 20 H 1.48502 * 109.47192 * 209.99780 * 18 16 14 21 21 H 1.48499 * 109.47375 * 330.00207 * 18 16 14 22 22 C 1.39274 * 120.55772 * 359.43827 * 5 4 3 23 23 C 1.50695 * 120.47330 * 180.29593 * 22 5 4 24 24 C 1.38582 * 120.32487 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47055 * 269.97565 * 1 2 3 26 26 H 1.09000 * 109.47481 * 29.97650 * 1 2 3 27 27 H 1.09001 * 109.47698 * 149.97764 * 1 2 3 28 28 H 1.08001 * 119.54890 * 0.04747 * 3 2 1 29 29 H 0.96995 * 120.00114 * 0.02562 * 8 6 5 30 30 H 1.08995 * 109.47184 * 59.99680 * 11 9 8 31 31 H 1.09004 * 109.46922 * 179.97438 * 11 9 8 32 32 H 1.09003 * 109.46654 * 299.99430 * 11 9 8 33 33 H 1.09003 * 109.47371 * 174.99963 * 12 9 8 34 34 H 1.09000 * 109.47692 * 295.00186 * 12 9 8 35 35 H 0.97005 * 119.99811 * 359.97438 * 13 12 9 36 36 H 0.96995 * 119.99949 * 179.97438 * 17 16 14 37 37 H 1.08993 * 109.47379 * 83.27626 * 23 22 5 38 38 H 1.09002 * 109.47179 * 203.28499 * 23 22 5 39 39 H 1.09007 * 109.46656 * 323.27990 * 23 22 5 40 40 H 1.07997 * 120.75394 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1963 0.0000 4 7 3.5216 1.2096 0.0049 5 6 4.2294 0.0866 -0.0010 6 6 5.7097 0.1512 -0.0015 7 8 6.3623 -0.8683 0.1042 8 7 6.3322 1.3407 -0.1192 9 6 7.7958 1.4044 -0.1202 10 1 8.1932 0.6426 0.5506 11 6 8.3161 1.1575 -1.5377 12 6 8.2464 2.7873 0.3547 13 7 7.6502 3.0730 1.6621 14 6 7.9129 4.2613 2.2896 15 1 8.5594 4.9883 1.8206 16 6 7.3476 4.5322 3.5281 17 7 6.5593 3.6464 4.0996 18 14 7.7055 6.1536 4.3838 19 1 6.6926 7.1612 3.9786 20 1 7.6497 5.9598 5.8551 21 1 9.0585 6.6288 3.9980 22 6 3.5923 -1.1519 -0.0010 23 6 4.3976 -2.4256 -0.0011 24 6 2.2067 -1.1962 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6647 2.1305 0.0008 29 1 5.8113 2.1545 -0.2032 30 1 7.9188 1.9192 -2.2084 31 1 9.4051 1.2054 -1.5384 32 1 7.9952 0.1722 -1.8760 33 1 9.3330 2.8064 0.4390 34 1 7.9245 3.5410 -0.3638 35 1 7.0692 2.4202 2.0832 36 1 6.1645 3.8355 4.9651 37 1 4.6935 -2.6684 1.0194 38 1 3.7939 -3.2371 -0.4073 39 1 5.2880 -2.2923 -0.6156 40 1 1.6844 -2.1415 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716446026.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:57 Heat of formation + Delta-G solvation = -21.358935 kcal Electronic energy + Delta-G solvation = -21383.133448 eV Core-core repulsion = 18196.881664 eV Total energy + Delta-G solvation = -3186.251783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.82791 -40.20658 -37.76865 -35.58769 -34.75783 -34.35798 -32.97981 -31.55792 -28.58087 -28.32962 -27.43393 -24.91593 -24.48286 -23.16796 -21.87865 -21.47983 -19.43968 -18.88677 -17.96623 -16.98030 -16.75430 -16.48384 -16.02664 -15.47951 -15.39040 -15.24394 -14.94880 -14.67825 -14.13227 -14.00684 -13.94801 -13.67059 -13.54509 -13.43035 -13.30261 -13.20293 -12.95488 -12.78217 -12.69397 -12.60888 -12.15788 -11.91246 -11.71865 -11.05814 -10.94779 -10.58031 -10.36657 -10.14788 -9.73998 -9.02898 -7.94714 -5.25247 -0.35323 0.24345 1.46633 1.49086 1.57513 1.71628 2.15721 2.55618 2.81738 3.19997 3.39371 3.68896 3.77161 3.81061 3.93997 3.96782 4.03167 4.24505 4.28541 4.48540 4.51830 4.63954 4.76423 4.79884 4.84186 4.85716 4.87698 4.91586 5.07884 5.10558 5.18757 5.24923 5.27815 5.36609 5.48680 5.59053 5.71706 6.25065 6.45333 6.83927 7.18168 7.31797 8.05518 8.29416 9.28687 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015534 B = 0.004941 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.010173 B = 5665.115019 C = 6878.228285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C 0.074 3.926 4 N -0.474 5.474 5 C 0.033 3.967 6 C 0.563 3.437 7 O -0.559 6.559 8 N -0.692 5.692 9 C 0.137 3.863 10 H 0.065 0.935 11 C -0.144 4.144 12 C 0.145 3.855 13 N -0.745 5.745 14 C -0.246 4.246 15 H 0.081 0.919 16 C -0.076 4.076 17 N -0.971 5.971 18 Si 0.977 3.023 19 H -0.285 1.285 20 H -0.298 1.298 21 H -0.267 1.267 22 C -0.079 4.079 23 C -0.110 4.110 24 C -0.091 4.091 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.180 0.820 29 H 0.410 0.590 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.037 0.963 35 H 0.372 0.628 36 H 0.249 0.751 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.727 -9.959 -13.085 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.103 4.103 3 C -0.087 4.087 4 N -0.185 5.185 5 C -0.104 4.104 6 C 0.350 3.650 7 O -0.439 6.439 8 N -0.342 5.342 9 C 0.032 3.968 10 H 0.083 0.917 11 C -0.203 4.203 12 C 0.019 3.981 13 N -0.388 5.388 14 C -0.378 4.378 15 H 0.099 0.901 16 C -0.268 4.268 17 N -0.622 5.622 18 Si 0.806 3.194 19 H -0.212 1.212 20 H -0.225 1.225 21 H -0.192 1.192 22 C -0.082 4.082 23 C -0.166 4.166 24 C -0.116 4.116 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.197 0.803 29 H 0.246 0.754 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.204 0.796 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.623 -9.691 -13.010 19.391 hybrid contribution -0.500 0.402 1.065 1.244 sum -11.123 -9.290 -11.944 18.780 Atomic orbital electron populations 1.20874 0.86754 1.04989 1.03947 1.21580 0.99812 0.93076 0.95787 1.23199 0.88608 0.99698 0.97221 1.67475 1.10397 1.30569 1.10011 1.20932 0.93530 0.90490 1.05401 1.18238 0.86877 0.83679 0.76227 1.90658 1.66925 1.34290 1.52074 1.45892 1.07628 1.09104 1.71539 1.21227 0.79361 0.97605 0.98605 0.91679 1.21999 1.02377 1.01944 0.93954 1.21142 0.96785 0.93318 0.86891 1.42557 1.57867 1.19139 1.19221 1.19676 1.23131 0.94901 1.00054 0.90124 1.25620 1.00502 1.01868 0.98805 1.69867 1.37582 1.36960 1.17740 0.85086 0.78158 0.79174 0.76987 1.21249 1.22463 1.19174 1.21165 0.95754 0.95646 0.95624 1.20966 0.99973 0.92527 1.03150 1.21817 0.91774 1.00235 0.97793 0.89539 0.89557 0.89125 0.80343 0.75407 0.91284 0.89590 0.92660 0.93841 0.94559 0.79616 0.94189 0.91474 0.89068 0.90350 0.80697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.03 71.23 0.71 -0.41 16 2 C -0.10 -1.94 5.91 -19.70 -0.12 -2.06 16 3 C 0.07 1.87 10.86 84.83 0.92 2.79 16 4 N -0.47 -15.96 9.56 -184.91 -1.77 -17.73 16 5 C 0.03 1.14 6.75 41.90 0.28 1.42 16 6 C 0.56 21.73 7.71 86.88 0.67 22.40 16 7 O -0.56 -22.74 12.97 -3.75 -0.05 -22.79 16 8 N -0.69 -26.30 4.50 -445.09 -2.01 -28.31 16 9 C 0.14 4.97 2.73 44.99 0.12 5.09 16 10 H 0.07 2.66 7.58 -2.38 -0.02 2.64 16 11 C -0.14 -4.02 9.48 71.98 0.68 -3.34 16 12 C 0.15 5.92 5.82 86.38 0.50 6.43 16 13 N -0.74 -39.36 5.43 -343.45 -1.87 -41.22 16 14 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 15 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 16 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 17 N -0.97 -61.74 13.06 21.65 0.28 -61.46 16 18 Si 0.98 47.04 29.55 68.60 2.03 49.07 16 19 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 20 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 C -0.08 -2.19 5.93 -19.52 -0.12 -2.30 16 23 C -0.11 -2.77 8.74 71.23 0.62 -2.14 16 24 C -0.09 -1.84 9.51 22.45 0.21 -1.62 16 25 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.09 0.71 8.09 -2.39 -0.02 0.69 16 27 H 0.09 0.61 8.09 -2.39 -0.02 0.59 16 28 H 0.18 3.56 8.06 -2.91 -0.02 3.53 16 29 H 0.41 16.04 7.95 -92.71 -0.74 15.30 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.37 21.60 7.33 -92.70 -0.68 20.92 16 36 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.09 1.59 8.05 -2.39 -0.02 1.57 16 39 H 0.08 2.33 5.85 -2.38 -0.01 2.32 16 40 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -73.68 337.56 2.07 -71.61 By element: Atomic # 1 Polarization: 42.14 SS G_CDS: -0.36 Total: 41.78 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 5.81 Total: 9.05 kcal Atomic # 7 Polarization: -143.36 SS G_CDS: -5.36 Total: -148.72 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -73.68 2.07 -71.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716446026.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.253 kcal (2) G-P(sol) polarization free energy of solvation -73.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds