Wall clock time and date at job start Mon Mar 30 2020 01:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38396 * 120.85421 * 2 1 4 4 C 1.38311 * 119.30114 * 180.02562 * 3 2 1 5 5 N 1.31951 * 121.08401 * 0.02562 * 4 3 2 6 6 C 1.31671 * 121.87780 * 359.67693 * 5 4 3 7 7 C 1.39562 * 120.56222 * 0.58747 * 6 5 4 8 8 C 1.47845 * 120.55524 * 179.72798 * 7 6 5 9 9 O 1.21557 * 119.99518 * 173.62080 * 8 7 6 10 10 N 1.34769 * 120.00286 * 353.63085 * 8 7 6 11 11 C 1.46502 * 119.99971 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.46962 * 324.99049 * 11 10 8 13 13 C 1.52990 * 109.47313 * 84.99852 * 11 10 8 14 14 C 1.53003 * 109.46569 * 204.99628 * 11 10 8 15 15 N 1.46497 * 109.47515 * 55.00062 * 14 11 10 16 16 C 1.46498 * 119.99845 * 269.99743 * 15 14 11 17 17 C 1.36936 * 120.00425 * 89.99433 * 15 14 11 18 18 H 1.08002 * 119.99820 * 23.19505 * 17 15 14 19 19 C 1.38813 * 120.00238 * 203.19233 * 17 15 14 20 20 N 1.31617 * 119.99796 * 10.96443 * 19 17 15 21 21 Si 1.86798 * 119.99714 * 190.96469 * 19 17 15 22 22 H 1.48493 * 109.47464 * 60.00198 * 21 19 17 23 23 H 1.48503 * 109.46645 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47188 * 299.99874 * 21 19 17 25 25 H 1.09002 * 109.47761 * 263.58425 * 1 2 3 26 26 H 1.09004 * 109.46900 * 23.58208 * 1 2 3 27 27 H 1.09001 * 109.47386 * 143.58066 * 1 2 3 28 28 H 1.07996 * 120.35325 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.45550 * 179.97438 * 4 3 2 30 30 H 1.07999 * 119.71759 * 180.31353 * 6 5 4 31 31 H 0.96998 * 120.00039 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.47262 * 299.99695 * 13 11 10 33 33 H 1.08996 * 109.47763 * 59.99687 * 13 11 10 34 34 H 1.09006 * 109.47385 * 179.97438 * 13 11 10 35 35 H 1.09005 * 109.46928 * 175.00133 * 14 11 10 36 36 H 1.09000 * 109.47555 * 294.99125 * 14 11 10 37 37 H 1.09001 * 109.47208 * 94.08320 * 16 15 14 38 38 H 1.08996 * 109.47615 * 214.08550 * 16 15 14 39 39 H 1.09008 * 109.47480 * 334.08162 * 16 15 14 40 40 H 0.96997 * 119.99597 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1506 -0.0005 5 7 4.2498 0.0025 -0.0016 6 6 3.6197 -1.1536 0.0042 7 6 2.2249 -1.2017 -0.0007 8 6 1.5175 -2.4999 -0.0002 9 8 0.3077 -2.5328 0.1125 10 7 2.2141 -3.6469 -0.1246 11 6 1.5131 -4.9333 -0.1248 12 1 0.6595 -4.8820 0.5511 13 6 1.0249 -5.2480 -1.5401 14 6 2.4676 -6.0342 0.3420 15 7 3.0275 -5.6742 1.6470 16 6 4.2710 -4.9033 1.7231 17 6 2.3887 -6.0582 2.7957 18 1 1.7197 -6.9060 2.7840 19 6 2.6010 -5.3579 3.9753 20 7 3.2376 -4.2063 3.9514 21 14 1.9830 -6.0502 5.5965 22 1 2.6157 -7.3705 5.8444 23 1 2.3333 -5.1181 6.6983 24 1 0.5081 -6.2117 5.5357 25 1 -0.3635 -0.1148 1.0212 26 1 -0.3633 0.9419 -0.4112 27 1 -0.3634 -0.8269 -0.6101 28 1 1.6966 2.1345 -0.0004 29 1 4.1558 2.0763 -0.0010 30 1 4.1870 -2.0726 0.0083 31 1 3.1796 -3.6207 -0.2148 32 1 0.3449 -4.4637 -1.8727 33 1 1.8785 -5.2993 -2.2160 34 1 0.5037 -6.2054 -1.5403 35 1 1.9235 -6.9749 0.4271 36 1 3.2751 -6.1459 -0.3816 37 1 4.0360 -3.8422 1.8063 38 1 4.8412 -5.2187 2.5968 39 1 4.8609 -5.0754 0.8228 40 1 3.3856 -3.7168 4.7756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716474380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:56 Heat of formation + Delta-G solvation = 21.074281 kcal Electronic energy + Delta-G solvation = -22236.429785 eV Core-core repulsion = 19052.018044 eV Total energy + Delta-G solvation = -3184.411741 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.48141 -38.70967 -36.40709 -34.24157 -33.45120 -32.07577 -30.87285 -29.85894 -27.66033 -26.19352 -25.61450 -24.34332 -22.39638 -21.67699 -20.44779 -19.95579 -17.44961 -16.86109 -16.38312 -16.10499 -15.22012 -14.93092 -14.87033 -14.48979 -13.86405 -13.61670 -13.35110 -13.15960 -12.86971 -12.66297 -12.55659 -12.47572 -12.13404 -11.95970 -11.71215 -11.43985 -11.09815 -10.83486 -10.78586 -10.55392 -10.22042 -9.98704 -9.86399 -9.73777 -9.41036 -9.08539 -9.01598 -8.59402 -8.36948 -6.75681 -5.72647 -3.18661 0.85210 1.30632 3.26830 3.40040 3.45341 3.45624 3.67420 4.05603 4.43948 4.50920 4.76712 4.82376 5.03065 5.16997 5.34451 5.48251 5.48788 5.61298 5.64589 5.74728 5.83815 5.89124 5.96307 5.98477 6.09086 6.19417 6.25635 6.46264 6.46737 6.55355 6.62742 6.71076 6.87404 7.14512 7.31544 7.64826 7.80367 7.97078 8.06192 8.39086 8.73767 9.22908 9.85213 10.33124 11.32528 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.006103 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.274577 B = 4586.640595 C = 5135.750991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.014 3.986 3 C -0.190 4.190 4 C 0.116 3.884 5 N -0.494 5.494 6 C 0.145 3.855 7 C -0.180 4.180 8 C 0.565 3.435 9 O -0.542 6.542 10 N -0.691 5.691 11 C 0.117 3.883 12 H 0.087 0.913 13 C -0.159 4.159 14 C 0.142 3.858 15 N -0.597 5.597 16 C 0.160 3.840 17 C -0.257 4.257 18 H 0.067 0.933 19 C 0.006 3.994 20 N -0.904 5.904 21 Si 0.904 3.096 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.284 1.284 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.137 0.863 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.394 0.606 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.030 0.970 38 H 0.045 0.955 39 H -0.006 1.006 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 7.355 -11.103 13.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.006 3.994 3 C -0.209 4.209 4 C -0.041 4.041 5 N -0.202 5.202 6 C -0.013 4.013 7 C -0.185 4.185 8 C 0.352 3.648 9 O -0.421 6.421 10 N -0.340 5.340 11 C 0.010 3.990 12 H 0.105 0.895 13 C -0.218 4.218 14 C 0.014 3.986 15 N -0.319 5.319 16 C 0.016 3.984 17 C -0.387 4.387 18 H 0.085 0.915 19 C -0.193 4.193 20 N -0.549 5.549 21 Si 0.734 3.266 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.210 1.210 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.155 0.845 29 H 0.174 0.826 30 H 0.175 0.825 31 H 0.229 0.771 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.064 0.936 39 H 0.013 0.987 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.500 7.407 -10.856 13.152 hybrid contribution -0.711 -0.125 1.130 1.341 sum -1.211 7.283 -9.726 12.211 Atomic orbital electron populations 1.21060 0.89326 1.02988 1.04247 1.20473 0.97472 0.91414 0.90054 1.22003 0.95586 0.98468 1.04889 1.22885 0.91719 0.96391 0.93061 1.67682 1.40863 0.98279 1.13426 1.22996 0.90636 0.96446 0.91224 1.20996 0.95229 0.94806 1.07516 1.17852 0.86918 0.83476 0.76581 1.90669 1.13728 1.87123 1.50615 1.45720 1.10358 1.05625 1.72280 1.21914 0.97743 0.83859 0.95507 0.89453 1.22153 1.00769 1.01412 0.97465 1.21210 0.94447 0.94970 0.88008 1.43871 1.23692 1.64058 1.00266 1.20873 0.86013 0.95692 0.95868 1.19115 1.24214 1.08769 0.86578 0.91480 1.25015 1.00168 0.95499 0.98599 1.70021 1.45367 1.13220 1.26249 0.86353 0.78675 0.78032 0.83555 1.21097 1.21725 1.20984 0.90028 0.92310 0.88305 0.84520 0.82625 0.82461 0.77119 0.92967 0.93170 0.92000 0.92183 0.93975 0.95199 0.93590 0.98708 0.93801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 8.84 36.01 0.32 -1.36 16 2 C 0.01 0.22 5.95 -103.91 -0.62 -0.40 16 3 C -0.19 -2.35 9.78 -39.50 -0.39 -2.73 16 4 C 0.12 1.46 11.17 -17.47 -0.20 1.27 16 5 N -0.49 -7.60 10.35 -12.91 -0.13 -7.74 16 6 C 0.15 2.34 10.70 -17.13 -0.18 2.16 16 7 C -0.18 -3.07 5.89 -104.82 -0.62 -3.69 16 8 C 0.57 10.85 7.69 -12.33 -0.09 10.76 16 9 O -0.54 -11.54 13.17 5.32 0.07 -11.47 16 10 N -0.69 -12.54 4.36 -54.75 -0.24 -12.78 16 11 C 0.12 2.15 2.88 -67.93 -0.20 1.96 16 12 H 0.09 1.94 7.58 -51.93 -0.39 1.55 16 13 C -0.16 -2.34 9.48 37.15 0.35 -1.98 16 14 C 0.14 2.70 5.33 -4.04 -0.02 2.68 16 15 N -0.60 -14.15 2.78 -181.12 -0.50 -14.65 16 16 C 0.16 3.68 7.62 59.85 0.46 4.14 16 17 C -0.26 -6.91 9.66 -15.06 -0.15 -7.06 16 18 H 0.07 1.77 7.84 -52.49 -0.41 1.36 16 19 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 20 N -0.90 -26.02 10.62 55.49 0.59 -25.44 16 21 Si 0.90 22.09 29.57 -169.99 -5.03 17.07 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 27 H 0.10 1.55 5.97 -51.93 -0.31 1.24 16 28 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.16 2.37 6.47 -52.49 -0.34 2.03 16 31 H 0.39 6.60 5.27 -40.82 -0.22 6.39 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 36 H 0.04 0.70 7.86 -51.93 -0.41 0.30 16 37 H 0.03 0.73 6.92 -51.93 -0.36 0.37 16 38 H 0.05 1.17 7.23 -51.93 -0.38 0.80 16 39 H -0.01 -0.11 7.85 -51.92 -0.41 -0.52 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 328.37 15.07 4.95 4.95 Total: -1.00 -31.70 328.37 -7.44 -39.14 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.73 Total: 5.11 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -1.42 Total: 5.80 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.29 Total: -60.60 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.07 Total: -11.47 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.70 -7.44 -39.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716474380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.215 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds