Wall clock time and date at job start Mon Mar 30 2020 01:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34652 * 125.80068 * 2 1 4 4 H 0.97010 * 124.84987 * 0.02562 * 3 2 1 5 5 C 1.36440 * 110.30060 * 180.29433 * 3 2 1 6 6 C 1.34491 * 108.85632 * 359.74826 * 5 3 2 7 7 C 1.36762 * 125.80010 * 179.86797 * 2 1 3 8 8 C 1.47262 * 126.94816 * 359.97438 * 7 2 1 9 9 O 1.21633 * 119.99373 * 359.71021 * 8 7 2 10 10 N 1.34773 * 120.00723 * 179.71139 * 8 7 2 11 11 C 1.46500 * 120.00509 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46593 * 324.99907 * 11 10 8 13 13 C 1.52998 * 109.47003 * 204.99732 * 11 10 8 14 14 N 1.46500 * 109.47071 * 55.00255 * 13 11 10 15 15 C 1.36942 * 120.00244 * 180.02562 * 14 13 11 16 16 H 1.08006 * 119.99523 * 359.97438 * 15 14 13 17 17 C 1.38801 * 120.00458 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00011 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00317 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47262 * 89.99995 * 19 17 15 21 21 H 1.48505 * 109.47186 * 210.00479 * 19 17 15 22 22 H 1.48504 * 109.46827 * 330.00184 * 19 17 15 23 23 C 1.52996 * 109.47073 * 84.99721 * 11 10 8 24 24 C 1.53002 * 117.49888 * 231.25527 * 23 11 10 25 25 C 1.53000 * 117.50107 * 299.91289 * 23 11 10 26 26 H 1.09001 * 109.47600 * 270.12760 * 1 2 3 27 27 H 1.08994 * 109.47467 * 30.13544 * 1 2 3 28 28 H 1.09003 * 109.47269 * 150.13357 * 1 2 3 29 29 H 1.08001 * 125.57669 * 179.73100 * 5 3 2 30 30 H 1.07997 * 126.83918 * 180.02562 * 6 5 3 31 31 H 0.97006 * 119.99568 * 359.97438 * 10 8 7 32 32 H 1.08997 * 109.47096 * 174.99683 * 13 11 10 33 33 H 1.08996 * 109.47337 * 294.99987 * 13 11 10 34 34 H 0.96999 * 120.00125 * 359.97438 * 14 13 11 35 35 H 0.97001 * 120.00226 * 179.97438 * 18 17 15 36 36 H 1.09002 * 115.54951 * 85.58501 * 23 11 10 37 37 H 1.09000 * 117.49996 * 215.00804 * 24 23 11 38 38 H 1.08999 * 117.49664 * 0.02562 * 24 23 11 39 39 H 1.09008 * 117.49673 * 359.97438 * 25 23 11 40 40 H 1.08999 * 117.49959 * 144.99502 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9732 2.0074 0.0004 5 6 3.6094 0.7275 -0.0066 6 6 3.6882 -0.6151 -0.0053 7 6 2.3070 -1.1092 0.0026 8 6 1.8703 -2.5156 0.0063 9 8 0.6839 -2.7839 0.0128 10 7 2.7849 -3.5054 0.0027 11 6 2.3504 -4.9045 0.0058 12 1 1.4416 -5.0012 0.5998 13 6 3.4506 -5.7788 0.6107 14 7 3.8007 -5.2729 1.9403 15 6 4.7691 -5.8997 2.6783 16 1 5.2744 -6.7674 2.2803 17 6 5.1012 -5.4201 3.9378 18 7 4.4851 -4.3631 4.4230 19 14 6.4217 -6.2756 4.9448 20 1 7.7445 -5.6740 4.6396 21 1 6.1251 -6.1122 6.3907 22 1 6.4449 -7.7210 4.6046 23 6 2.0721 -5.3553 -1.4295 24 6 0.7244 -6.0225 -1.7116 25 6 0.9943 -4.6008 -2.2105 26 1 -0.3634 0.0023 1.0276 27 1 -0.3634 0.8887 -0.5159 28 1 -0.3634 -0.8912 -0.5118 29 1 4.4496 1.4060 -0.0122 30 1 4.5889 -1.2109 -0.0090 31 1 3.7311 -3.2914 -0.0028 32 1 3.0938 -6.8053 0.6950 33 1 4.3307 -5.7517 -0.0317 34 1 3.3472 -4.4934 2.2976 35 1 4.7169 -4.0281 5.3033 36 1 2.9379 -5.7148 -1.9856 37 1 0.7036 -6.8210 -2.4532 38 1 0.0359 -6.1398 -0.8747 39 1 0.4832 -3.7834 -1.7016 40 1 1.1511 -4.4639 -3.2805 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716607517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:06 Heat of formation + Delta-G solvation = 40.983685 kcal Electronic energy + Delta-G solvation = -21662.753541 eV Core-core repulsion = 18479.205136 eV Total energy + Delta-G solvation = -3183.548405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.08532 -39.18803 -36.83513 -34.87783 -33.24986 -31.48308 -31.27274 -30.51384 -27.92646 -26.16044 -23.99939 -22.57168 -21.93586 -21.37649 -20.61573 -19.79186 -19.16671 -17.59160 -17.07338 -15.88371 -15.61668 -15.11932 -14.84852 -14.55623 -14.20621 -13.71145 -13.29441 -13.20048 -13.08448 -12.85645 -12.73680 -12.60526 -12.47197 -11.96093 -11.54067 -11.44628 -11.11023 -10.90860 -10.83865 -10.74754 -10.12684 -9.98001 -9.83186 -9.60486 -9.29679 -8.85065 -8.70823 -8.38583 -8.01441 -6.88816 -5.71518 -3.01178 1.98777 2.58791 3.19627 3.45927 3.51120 3.53051 3.76331 3.95567 4.34633 4.61460 4.92343 5.02024 5.08236 5.25825 5.30034 5.35579 5.45117 5.58674 5.62026 5.67590 5.72350 5.90319 5.95377 6.02212 6.04744 6.06345 6.21283 6.32311 6.34977 6.48233 6.63203 6.66161 6.81568 6.89707 7.04272 7.17633 7.51727 7.73502 8.19127 8.46082 8.86710 9.57784 10.15053 10.50788 11.50601 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013488 B = 0.005708 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.405921 B = 4904.196323 C = 6445.781920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.098 3.902 3 N -0.556 5.556 4 H 0.412 0.588 5 C -0.024 4.024 6 C -0.159 4.159 7 C -0.227 4.227 8 C 0.595 3.405 9 O -0.560 6.560 10 N -0.702 5.702 11 C 0.170 3.830 12 H 0.087 0.913 13 C 0.148 3.852 14 N -0.731 5.731 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.930 5.930 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.162 4.162 24 C -0.173 4.173 25 C -0.184 4.184 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.167 0.833 30 H 0.146 0.854 31 H 0.403 0.597 32 H 0.034 0.966 33 H 0.023 0.977 34 H 0.387 0.613 35 H 0.254 0.746 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.456 9.928 -13.305 17.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.020 4.020 3 N -0.152 5.152 4 H 0.248 0.752 5 C -0.151 4.151 6 C -0.183 4.183 7 C -0.237 4.237 8 C 0.384 3.616 9 O -0.442 6.442 10 N -0.351 5.351 11 C 0.066 3.934 12 H 0.105 0.895 13 C 0.020 3.980 14 N -0.376 5.376 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.578 5.578 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.181 4.181 24 C -0.211 4.211 25 C -0.221 4.221 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.120 0.880 29 H 0.184 0.816 30 H 0.164 0.836 31 H 0.238 0.762 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.221 0.779 35 H 0.064 0.936 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.137 0.863 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.152 9.716 -13.221 17.523 hybrid contribution 1.237 0.328 0.792 1.505 sum -4.915 10.044 -12.429 16.719 Atomic orbital electron populations 1.20537 0.87209 1.03789 1.03400 1.20288 0.93588 0.85697 1.02402 1.41538 1.06281 1.08170 1.59206 0.75174 1.21659 0.85524 0.96482 1.11436 1.22115 0.96120 0.93637 1.06462 1.20197 0.93157 0.92307 1.17992 1.17253 0.85345 0.84009 0.74972 1.90614 1.16791 1.84404 1.52348 1.45702 1.09924 1.05365 1.74067 1.20742 0.99372 0.80403 0.92929 0.89524 1.20911 0.93751 0.95304 0.88040 1.42356 1.45711 1.35512 1.13999 1.19213 1.11964 1.08799 0.97208 0.91193 1.24741 1.00164 0.98251 0.97703 1.69683 1.44469 1.25245 1.18398 0.86204 0.81536 0.78865 0.79648 1.21790 1.21855 1.20789 1.22655 0.93005 1.05051 0.97436 1.22888 0.98952 0.95865 1.03353 1.23264 1.03170 0.96472 0.99174 0.90554 0.92334 0.88028 0.81594 0.83637 0.76232 0.94840 0.95879 0.77882 0.93578 0.88086 0.89413 0.88799 0.86296 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.88 36.01 0.36 -0.71 16 2 C 0.10 1.32 7.17 -81.89 -0.59 0.73 16 3 N -0.56 -5.83 5.90 -9.11 -0.05 -5.89 16 4 H 0.41 2.78 8.96 -40.82 -0.37 2.42 16 5 C -0.02 -0.27 11.89 -16.83 -0.20 -0.47 16 6 C -0.16 -2.26 10.56 -37.49 -0.40 -2.65 16 7 C -0.23 -3.64 6.29 -103.35 -0.65 -4.29 16 8 C 0.59 10.74 7.14 -12.59 -0.09 10.65 16 9 O -0.56 -10.89 11.84 5.25 0.06 -10.82 16 10 N -0.70 -12.38 4.49 -54.94 -0.25 -12.63 16 11 C 0.17 3.07 2.43 -67.93 -0.17 2.90 16 12 H 0.09 1.76 7.33 -51.93 -0.38 1.38 16 13 C 0.15 3.02 5.80 -4.04 -0.02 2.99 16 14 N -0.73 -18.63 5.43 -59.91 -0.33 -18.96 16 15 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 16 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 19 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C -0.16 -2.46 5.36 -90.62 -0.49 -2.95 16 24 C -0.17 -2.42 10.18 -26.69 -0.27 -2.69 16 25 C -0.18 -2.70 9.73 -26.70 -0.26 -2.96 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.10 1.36 6.47 -51.93 -0.34 1.02 16 29 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.15 1.96 7.69 -52.49 -0.40 1.56 16 31 H 0.40 6.95 7.73 -40.82 -0.32 6.63 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.39 10.61 7.33 -40.82 -0.30 10.31 16 35 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.10 1.44 8.11 -51.93 -0.42 1.02 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.37 8.05 -51.93 -0.42 0.95 16 39 H 0.12 2.00 5.02 -51.92 -0.26 1.74 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 333.28 15.07 5.02 5.02 Total: -1.00 -33.14 333.28 -8.57 -41.71 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: -5.71 Total: 18.59 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -3.02 Total: -6.80 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: 0.10 Total: -65.20 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.06 Total: -10.82 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.14 -8.57 -41.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716607517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.691 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds