Wall clock time and date at job start Mon Mar 30 2020 01:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34652 * 125.80068 * 2 1 4 4 H 0.97010 * 124.84987 * 0.02562 * 3 2 1 5 5 C 1.36440 * 110.30060 * 180.29433 * 3 2 1 6 6 C 1.34491 * 108.85632 * 359.74826 * 5 3 2 7 7 C 1.36762 * 125.80010 * 179.86797 * 2 1 3 8 8 C 1.47262 * 126.94816 * 359.97438 * 7 2 1 9 9 O 1.21633 * 119.99373 * 359.71021 * 8 7 2 10 10 N 1.34773 * 120.00723 * 179.71139 * 8 7 2 11 11 C 1.46500 * 120.00509 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46593 * 324.99907 * 11 10 8 13 13 C 1.52998 * 109.47003 * 204.99732 * 11 10 8 14 14 N 1.46500 * 109.47071 * 55.00255 * 13 11 10 15 15 C 1.36942 * 120.00244 * 180.02562 * 14 13 11 16 16 H 1.08006 * 119.99523 * 359.97438 * 15 14 13 17 17 C 1.38801 * 120.00458 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00011 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00317 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47262 * 89.99995 * 19 17 15 21 21 H 1.48505 * 109.47186 * 210.00479 * 19 17 15 22 22 H 1.48504 * 109.46827 * 330.00184 * 19 17 15 23 23 C 1.52996 * 109.47073 * 84.99721 * 11 10 8 24 24 C 1.53002 * 117.49888 * 231.25527 * 23 11 10 25 25 C 1.53000 * 117.50107 * 299.91289 * 23 11 10 26 26 H 1.09001 * 109.47600 * 270.12760 * 1 2 3 27 27 H 1.08994 * 109.47467 * 30.13544 * 1 2 3 28 28 H 1.09003 * 109.47269 * 150.13357 * 1 2 3 29 29 H 1.08001 * 125.57669 * 179.73100 * 5 3 2 30 30 H 1.07997 * 126.83918 * 180.02562 * 6 5 3 31 31 H 0.97006 * 119.99568 * 359.97438 * 10 8 7 32 32 H 1.08997 * 109.47096 * 174.99683 * 13 11 10 33 33 H 1.08996 * 109.47337 * 294.99987 * 13 11 10 34 34 H 0.96999 * 120.00125 * 359.97438 * 14 13 11 35 35 H 0.97001 * 120.00226 * 179.97438 * 18 17 15 36 36 H 1.09002 * 115.54951 * 85.58501 * 23 11 10 37 37 H 1.09000 * 117.49996 * 215.00804 * 24 23 11 38 38 H 1.08999 * 117.49664 * 0.02562 * 24 23 11 39 39 H 1.09008 * 117.49673 * 359.97438 * 25 23 11 40 40 H 1.08999 * 117.49959 * 144.99502 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9732 2.0074 0.0004 5 6 3.6094 0.7275 -0.0066 6 6 3.6882 -0.6151 -0.0053 7 6 2.3070 -1.1092 0.0026 8 6 1.8703 -2.5156 0.0063 9 8 0.6839 -2.7839 0.0128 10 7 2.7849 -3.5054 0.0027 11 6 2.3504 -4.9045 0.0058 12 1 1.4416 -5.0012 0.5998 13 6 3.4506 -5.7788 0.6107 14 7 3.8007 -5.2729 1.9403 15 6 4.7691 -5.8997 2.6783 16 1 5.2744 -6.7674 2.2803 17 6 5.1012 -5.4201 3.9378 18 7 4.4851 -4.3631 4.4230 19 14 6.4217 -6.2756 4.9448 20 1 7.7445 -5.6740 4.6396 21 1 6.1251 -6.1122 6.3907 22 1 6.4449 -7.7210 4.6046 23 6 2.0721 -5.3553 -1.4295 24 6 0.7244 -6.0225 -1.7116 25 6 0.9943 -4.6008 -2.2105 26 1 -0.3634 0.0023 1.0276 27 1 -0.3634 0.8887 -0.5159 28 1 -0.3634 -0.8912 -0.5118 29 1 4.4496 1.4060 -0.0122 30 1 4.5889 -1.2109 -0.0090 31 1 3.7311 -3.2914 -0.0028 32 1 3.0938 -6.8053 0.6950 33 1 4.3307 -5.7517 -0.0317 34 1 3.3472 -4.4934 2.2976 35 1 4.7169 -4.0281 5.3033 36 1 2.9379 -5.7148 -1.9856 37 1 0.7036 -6.8210 -2.4532 38 1 0.0359 -6.1398 -0.8747 39 1 0.4832 -3.7834 -1.7016 40 1 1.1511 -4.4639 -3.2805 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716607517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:05 Heat of formation + Delta-G solvation = 18.475929 kcal Electronic energy + Delta-G solvation = -21663.729551 eV Core-core repulsion = 18479.205136 eV Total energy + Delta-G solvation = -3184.524414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.11027 -40.53115 -38.18059 -36.58096 -34.89563 -33.07419 -32.38918 -31.83542 -29.57935 -27.21444 -25.90914 -23.90815 -23.09013 -22.98269 -21.65859 -21.10799 -20.46714 -19.13858 -18.54209 -17.22856 -16.95635 -16.53710 -16.50990 -15.86285 -15.56124 -15.08277 -14.96737 -14.72382 -14.37246 -14.21910 -13.93407 -13.67813 -13.52380 -13.37861 -13.15337 -12.78255 -12.65673 -12.47278 -12.38307 -12.23606 -12.06433 -11.82700 -11.20575 -11.04723 -10.96210 -10.62947 -9.89576 -9.63897 -9.05240 -8.99622 -7.91686 -5.22045 0.83595 1.48853 1.50881 1.58611 1.59337 2.19401 2.54848 2.59518 2.66779 3.12851 3.42010 3.63061 3.97609 3.99537 4.11761 4.17899 4.21842 4.32835 4.34888 4.44888 4.51439 4.67546 4.71460 4.75911 4.85122 4.92863 5.01476 5.08095 5.10603 5.15711 5.30253 5.35242 5.46746 5.51458 5.72188 5.84251 6.03102 6.27996 6.70396 6.82695 7.35076 7.49212 8.08554 8.33354 9.31322 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013488 B = 0.005708 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.405921 B = 4904.196323 C = 6445.781920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.098 3.902 3 N -0.537 5.537 4 H 0.434 0.566 5 C -0.002 4.002 6 C -0.193 4.193 7 C -0.270 4.270 8 C 0.587 3.413 9 O -0.583 6.583 10 N -0.702 5.702 11 C 0.181 3.819 12 H 0.056 0.944 13 C 0.150 3.850 14 N -0.742 5.742 15 C -0.244 4.244 16 H 0.079 0.921 17 C -0.074 4.074 18 N -0.969 5.969 19 Si 0.975 3.025 20 H -0.285 1.285 21 H -0.299 1.299 22 H -0.269 1.269 23 C -0.167 4.167 24 C -0.162 4.162 25 C -0.181 4.181 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.207 0.793 30 H 0.142 0.858 31 H 0.403 0.597 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.373 0.627 35 H 0.249 0.751 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.662 10.602 -14.580 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.022 4.022 3 N -0.134 5.134 4 H 0.274 0.726 5 C -0.130 4.130 6 C -0.217 4.217 7 C -0.280 4.280 8 C 0.378 3.622 9 O -0.467 6.467 10 N -0.351 5.351 11 C 0.076 3.924 12 H 0.075 0.925 13 C 0.024 3.976 14 N -0.385 5.385 15 C -0.376 4.376 16 H 0.097 0.903 17 C -0.267 4.267 18 N -0.619 5.619 19 Si 0.804 3.196 20 H -0.212 1.212 21 H -0.226 1.226 22 H -0.194 1.194 23 C -0.186 4.186 24 C -0.200 4.200 25 C -0.218 4.218 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.223 0.777 30 H 0.160 0.840 31 H 0.238 0.762 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.205 0.795 35 H 0.058 0.942 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.356 10.388 -14.540 18.655 hybrid contribution 0.951 0.160 1.140 1.494 sum -4.404 10.549 -13.400 17.613 Atomic orbital electron populations 1.20515 0.86138 1.04496 1.03432 1.20495 0.94432 0.85924 1.01308 1.41530 1.05789 1.08642 1.57481 0.72630 1.22199 0.86595 0.95953 1.08238 1.22245 0.95342 0.95216 1.08882 1.20302 0.94902 0.91835 1.20955 1.17668 0.85061 0.85043 0.74453 1.90590 1.17598 1.84950 1.53543 1.45683 1.09918 1.05240 1.74238 1.20505 0.97025 0.80556 0.94331 0.92548 1.21032 0.94932 0.95607 0.86070 1.42525 1.45253 1.35077 1.15671 1.19646 1.11832 1.08665 0.97467 0.90291 1.25581 1.02764 0.99239 0.99085 1.69860 1.46429 1.27087 1.18537 0.85114 0.78774 0.78352 0.77327 1.21165 1.22564 1.19403 1.22564 0.94275 1.06118 0.95683 1.22973 0.97388 0.96238 1.03382 1.23194 1.02475 0.96189 0.99927 0.90772 0.88641 0.90271 0.77675 0.84019 0.76201 0.94544 0.94416 0.79453 0.94178 0.86362 0.86591 0.90005 0.88669 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.99 9.88 71.24 0.70 -1.29 16 2 C 0.10 2.57 7.17 41.78 0.30 2.87 16 3 N -0.54 -9.98 5.90 -182.73 -1.08 -11.06 16 4 H 0.43 4.37 8.96 -92.70 -0.83 3.54 16 5 C 0.00 -0.05 11.89 83.12 0.99 0.94 16 6 C -0.19 -5.45 10.56 23.62 0.25 -5.20 16 7 C -0.27 -8.86 6.29 -19.04 -0.12 -8.98 16 8 C 0.59 22.21 7.14 86.62 0.62 22.83 16 9 O -0.58 -23.97 11.84 -4.14 -0.05 -24.02 16 10 N -0.70 -25.84 4.49 -445.96 -2.00 -27.84 16 11 C 0.18 6.69 2.43 44.99 0.11 6.80 16 12 H 0.06 2.42 7.33 -2.39 -0.02 2.40 16 13 C 0.15 6.16 5.80 86.38 0.50 6.67 16 14 N -0.74 -38.60 5.43 -343.46 -1.87 -40.47 16 15 C -0.24 -13.76 9.99 84.03 0.84 -12.92 16 16 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 17 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 18 N -0.97 -60.58 13.06 21.65 0.28 -60.29 16 19 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 20 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 23 C -0.17 -4.98 5.36 -10.79 -0.06 -5.04 16 24 C -0.16 -4.36 10.18 30.62 0.31 -4.05 16 25 C -0.18 -5.21 9.73 30.62 0.30 -4.91 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 2.18 6.47 -2.39 -0.02 2.16 16 29 H 0.21 2.46 8.06 -2.91 -0.02 2.43 16 30 H 0.14 3.94 7.69 -2.91 -0.02 3.92 16 31 H 0.40 14.53 7.73 -92.70 -0.72 13.82 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.37 21.28 7.33 -92.71 -0.68 20.60 16 35 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.12 3.14 8.11 -2.39 -0.02 3.12 16 37 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.08 2.40 8.05 -2.39 -0.02 2.38 16 39 H 0.10 3.29 5.02 -2.38 -0.01 3.28 16 40 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -73.23 333.28 1.37 -71.85 By element: Atomic # 1 Polarization: 50.56 SS G_CDS: -1.15 Total: 49.41 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 5.21 Total: -6.13 kcal Atomic # 7 Polarization: -135.00 SS G_CDS: -4.67 Total: -139.66 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.02 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -73.23 1.37 -71.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716607517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.329 kcal (2) G-P(sol) polarization free energy of solvation -73.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds