Wall clock time and date at job start Mon Mar 30 2020 01:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35450 * 125.56507 * 2 1 4 4 C 1.39836 * 107.86545 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.45746 * 179.97438 * 4 3 2 6 6 C 1.37870 * 107.08447 * 0.02562 * 4 3 2 7 7 C 1.46679 * 126.23547 * 179.97438 * 6 4 3 8 8 O 1.21692 * 119.99625 * 0.02562 * 7 6 4 9 9 N 1.34773 * 120.00319 * 180.27191 * 7 6 4 10 10 C 1.46495 * 120.00117 * 179.72431 * 9 7 6 11 11 C 1.53005 * 109.47309 * 178.34016 * 10 9 7 12 12 N 1.46492 * 115.55043 * 279.55623 * 11 10 9 13 13 C 1.36938 * 120.00092 * 295.37632 * 12 11 10 14 14 H 1.07998 * 119.99782 * 353.74617 * 13 12 11 15 15 C 1.38807 * 120.00080 * 173.75102 * 13 12 11 16 16 N 1.31619 * 120.00043 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 120.00212 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47040 * 89.99975 * 17 15 13 19 19 H 1.48502 * 109.47116 * 210.00360 * 17 15 13 20 20 H 1.48496 * 109.46815 * 330.00078 * 17 15 13 21 21 C 1.53002 * 117.49792 * 133.88127 * 11 10 9 22 22 C 1.53003 * 117.49632 * 65.22333 * 11 10 9 23 23 N 1.35532 * 125.56049 * 180.23781 * 2 1 3 24 24 H 0.96997 * 125.68414 * 0.03001 * 23 2 1 25 25 H 1.09000 * 109.47288 * 89.99628 * 1 2 3 26 26 H 1.09002 * 109.47049 * 209.99833 * 1 2 3 27 27 H 1.09004 * 109.46699 * 329.99613 * 1 2 3 28 28 H 1.08003 * 126.06694 * 359.95043 * 3 2 1 29 29 H 1.08995 * 109.47442 * 270.04481 * 5 4 3 30 30 H 1.09003 * 109.46955 * 30.04856 * 5 4 3 31 31 H 1.09007 * 109.46813 * 150.04227 * 5 4 3 32 32 H 0.97005 * 119.99841 * 359.73142 * 9 7 6 33 33 H 1.09004 * 109.47046 * 298.33906 * 10 9 7 34 34 H 1.08995 * 109.46984 * 58.33826 * 10 9 7 35 35 H 0.97004 * 120.00168 * 115.36846 * 12 11 10 36 36 H 0.97003 * 119.99860 * 179.97438 * 16 15 13 37 37 H 1.09001 * 117.50210 * 0.02562 * 21 11 10 38 38 H 1.09000 * 117.49199 * 145.01946 * 21 11 10 39 39 H 1.08996 * 117.49625 * 214.98108 * 22 11 10 40 40 H 1.08996 * 117.50084 * 359.97438 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2949 1.1018 0.0000 4 6 3.6270 0.6767 0.0006 5 6 4.8486 1.5591 0.0003 6 6 3.6122 -0.7019 0.0004 7 6 4.7860 -1.5816 0.0003 8 8 5.9049 -1.1031 0.0009 9 7 4.6253 -2.9197 -0.0055 10 6 5.7976 -3.7982 -0.0117 11 6 5.3411 -5.2582 0.0243 12 7 4.9683 -5.7712 1.3448 13 6 5.9120 -5.8709 2.3321 14 1 6.9493 -5.6679 2.1101 15 6 5.5355 -6.2328 3.6182 16 7 6.4426 -6.3291 4.5670 17 14 3.7413 -6.5833 4.0024 18 1 3.4602 -8.0247 3.7816 19 1 3.4613 -6.2356 5.4187 20 1 2.8761 -5.7682 3.1123 21 6 6.0092 -6.2314 -0.9490 22 6 4.5639 -5.7853 -1.1836 23 7 2.2953 -1.1025 -0.0046 24 1 1.9834 -2.0210 -0.0088 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.9545 2.1268 -0.0008 29 1 5.1429 1.7718 -1.0274 30 1 4.6221 2.4933 0.5142 31 1 5.6644 1.0504 0.5140 32 1 3.7334 -3.3011 -0.0057 33 1 6.3792 -3.6216 -0.9165 34 1 6.4134 -3.5884 0.8628 35 1 4.0529 -6.0402 1.5200 36 1 6.1794 -6.5817 5.4658 37 1 6.7743 -5.8318 -1.6147 38 1 6.1711 -7.2536 -0.6067 39 1 3.7755 -6.5141 -0.9957 40 1 4.3774 -5.0919 -2.0037 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716685806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:42 Heat of formation + Delta-G solvation = 38.958913 kcal Electronic energy + Delta-G solvation = -21365.760861 eV Core-core repulsion = 18182.124656 eV Total energy + Delta-G solvation = -3183.636205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41433 -39.03219 -37.57354 -34.03442 -33.09187 -32.65668 -31.58563 -30.41271 -27.91912 -27.37457 -25.38403 -23.64383 -22.15148 -21.07981 -20.49686 -19.58869 -18.88422 -18.06664 -17.69060 -15.87449 -15.40753 -15.35950 -14.98556 -14.39399 -14.19302 -14.07602 -13.63289 -13.37323 -13.10682 -12.95806 -12.80166 -12.75674 -12.47046 -12.33779 -12.07432 -12.02664 -11.46086 -11.24643 -11.13753 -11.06680 -10.48153 -10.34450 -9.80387 -9.67587 -9.48697 -8.94747 -8.79070 -8.75132 -7.97785 -7.42158 -5.86205 -3.24941 1.52545 2.66207 3.02003 3.26344 3.28377 3.36121 3.36888 3.59191 4.30818 4.48223 4.67397 4.90293 4.92057 5.02750 5.12718 5.19714 5.26944 5.33040 5.40621 5.44812 5.60756 5.68191 5.74423 5.89473 5.90555 5.94449 6.11863 6.19636 6.24705 6.31994 6.44097 6.57659 6.62279 6.69184 6.80521 6.97222 7.33996 7.77709 7.90199 8.32302 8.44592 9.08424 9.79815 9.97429 11.31455 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015721 B = 0.004955 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.640766 B = 5649.458153 C = 6090.857311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.047 3.953 3 C -0.210 4.210 4 C -0.076 4.076 5 C -0.089 4.089 6 C -0.052 4.052 7 C 0.584 3.416 8 O -0.531 6.531 9 N -0.715 5.715 10 C 0.148 3.852 11 C 0.132 3.868 12 N -0.713 5.713 13 C -0.246 4.246 14 H 0.094 0.906 15 C 0.011 3.989 16 N -0.927 5.927 17 Si 0.883 3.117 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.279 1.279 21 C -0.179 4.179 22 C -0.191 4.191 23 N -0.537 5.537 24 H 0.414 0.586 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.390 0.610 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.363 0.637 36 H 0.261 0.739 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.159 10.910 -12.733 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.071 4.071 3 C -0.234 4.234 4 C -0.085 4.085 5 C -0.146 4.146 6 C -0.164 4.164 7 C 0.372 3.628 8 O -0.408 6.408 9 N -0.364 5.364 10 C 0.023 3.977 11 C 0.039 3.961 12 N -0.354 5.354 13 C -0.375 4.375 14 H 0.111 0.889 15 C -0.186 4.186 16 N -0.573 5.573 17 Si 0.713 3.287 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.220 4.220 22 C -0.229 4.229 23 N -0.134 5.134 24 H 0.251 0.749 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.158 0.842 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.223 0.777 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.197 0.803 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.113 11.066 -12.529 20.073 hybrid contribution -1.969 -1.116 0.508 2.320 sum -13.082 9.950 -12.020 20.362 Atomic orbital electron populations 1.20397 0.87845 1.03567 1.02813 1.20470 0.93531 0.86292 1.06776 1.20534 0.91875 0.97772 1.13227 1.19909 0.95423 0.91081 1.02046 1.20332 0.94843 0.97434 1.02008 1.20328 0.82866 0.94308 1.18904 1.17022 0.87397 0.81495 0.76935 1.90795 1.24104 1.75081 1.50833 1.45807 1.10287 1.05427 1.74906 1.21269 0.86806 0.87265 1.02313 1.20079 1.02018 0.90497 0.83550 1.42101 1.08991 1.76546 1.07757 1.18988 0.90616 1.40307 0.87607 0.88857 1.24684 0.96842 1.01509 0.95558 1.69692 1.32063 1.53669 1.01904 0.86595 0.86448 0.78058 0.77623 1.21050 1.21627 1.20506 1.23359 0.93973 1.01425 1.03206 1.23139 0.96087 1.04015 0.99693 1.41902 1.05561 1.08395 1.57569 0.74879 0.90777 0.91549 0.89861 0.84202 0.91732 0.92220 0.89955 0.77684 0.91903 0.89575 0.80287 0.92884 0.89420 0.88343 0.89133 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.41 36.01 0.37 -0.23 16 2 C 0.05 0.50 7.13 -81.95 -0.58 -0.09 16 3 C -0.21 -2.49 10.66 -39.98 -0.43 -2.91 16 4 C -0.08 -1.09 6.21 -104.16 -0.65 -1.73 16 5 C -0.09 -1.18 9.83 36.00 0.35 -0.83 16 6 C -0.05 -0.77 7.06 -81.98 -0.58 -1.35 16 7 C 0.58 10.11 7.79 -12.85 -0.10 10.01 16 8 O -0.53 -10.75 14.80 5.20 0.08 -10.67 16 9 N -0.71 -11.46 5.51 -61.62 -0.34 -11.80 16 10 C 0.15 2.67 5.72 -4.04 -0.02 2.65 16 11 C 0.13 2.38 2.16 -131.82 -0.28 2.10 16 12 N -0.71 -15.84 5.29 -47.23 -0.25 -16.09 16 13 C -0.25 -6.68 10.01 -15.06 -0.15 -6.83 16 14 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 15 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 16 N -0.93 -28.68 13.97 55.49 0.78 -27.91 16 17 Si 0.88 21.40 27.68 -169.99 -4.70 16.69 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.28 -6.27 6.61 56.52 0.37 -5.89 16 21 C -0.18 -2.89 10.11 -26.69 -0.27 -3.16 16 22 C -0.19 -2.73 10.10 -26.69 -0.27 -3.00 16 23 N -0.54 -6.26 5.99 -5.69 -0.03 -6.29 16 24 H 0.41 3.84 8.19 -40.82 -0.33 3.51 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.28 6.48 -51.93 -0.34 0.94 16 32 H 0.39 5.38 7.56 -40.82 -0.31 5.07 16 33 H 0.06 1.06 7.94 -51.93 -0.41 0.64 16 34 H 0.09 1.87 7.76 -51.93 -0.40 1.47 16 35 H 0.36 7.87 5.98 -40.82 -0.24 7.63 16 36 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 38 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 338.30 15.07 5.10 5.10 Total: -1.00 -33.19 338.30 -7.93 -41.12 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -5.85 Total: 15.03 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -2.70 Total: -5.17 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: 0.15 Total: -62.10 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.70 Total: 16.69 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.19 -7.93 -41.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716685806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.080 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds