Wall clock time and date at job start Mon Mar 30 2020 01:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35450 * 125.56507 * 2 1 4 4 C 1.39836 * 107.86545 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.45746 * 179.97438 * 4 3 2 6 6 C 1.37870 * 107.08447 * 0.02562 * 4 3 2 7 7 C 1.46679 * 126.23547 * 179.97438 * 6 4 3 8 8 O 1.21692 * 119.99625 * 0.02562 * 7 6 4 9 9 N 1.34773 * 120.00319 * 180.27191 * 7 6 4 10 10 C 1.46495 * 120.00117 * 179.72431 * 9 7 6 11 11 C 1.53005 * 109.47309 * 178.34016 * 10 9 7 12 12 N 1.46492 * 115.55043 * 279.55623 * 11 10 9 13 13 C 1.36938 * 120.00092 * 295.37632 * 12 11 10 14 14 H 1.07998 * 119.99782 * 353.74617 * 13 12 11 15 15 C 1.38807 * 120.00080 * 173.75102 * 13 12 11 16 16 N 1.31619 * 120.00043 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 120.00212 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47040 * 89.99975 * 17 15 13 19 19 H 1.48502 * 109.47116 * 210.00360 * 17 15 13 20 20 H 1.48496 * 109.46815 * 330.00078 * 17 15 13 21 21 C 1.53002 * 117.49792 * 133.88127 * 11 10 9 22 22 C 1.53003 * 117.49632 * 65.22333 * 11 10 9 23 23 N 1.35532 * 125.56049 * 180.23781 * 2 1 3 24 24 H 0.96997 * 125.68414 * 0.03001 * 23 2 1 25 25 H 1.09000 * 109.47288 * 89.99628 * 1 2 3 26 26 H 1.09002 * 109.47049 * 209.99833 * 1 2 3 27 27 H 1.09004 * 109.46699 * 329.99613 * 1 2 3 28 28 H 1.08003 * 126.06694 * 359.95043 * 3 2 1 29 29 H 1.08995 * 109.47442 * 270.04481 * 5 4 3 30 30 H 1.09003 * 109.46955 * 30.04856 * 5 4 3 31 31 H 1.09007 * 109.46813 * 150.04227 * 5 4 3 32 32 H 0.97005 * 119.99841 * 359.73142 * 9 7 6 33 33 H 1.09004 * 109.47046 * 298.33906 * 10 9 7 34 34 H 1.08995 * 109.46984 * 58.33826 * 10 9 7 35 35 H 0.97004 * 120.00168 * 115.36846 * 12 11 10 36 36 H 0.97003 * 119.99860 * 179.97438 * 16 15 13 37 37 H 1.09001 * 117.50210 * 0.02562 * 21 11 10 38 38 H 1.09000 * 117.49199 * 145.01946 * 21 11 10 39 39 H 1.08996 * 117.49625 * 214.98108 * 22 11 10 40 40 H 1.08996 * 117.50084 * 359.97438 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2949 1.1018 0.0000 4 6 3.6270 0.6767 0.0006 5 6 4.8486 1.5591 0.0003 6 6 3.6122 -0.7019 0.0004 7 6 4.7860 -1.5816 0.0003 8 8 5.9049 -1.1031 0.0009 9 7 4.6253 -2.9197 -0.0055 10 6 5.7976 -3.7982 -0.0117 11 6 5.3411 -5.2582 0.0243 12 7 4.9683 -5.7712 1.3448 13 6 5.9120 -5.8709 2.3321 14 1 6.9493 -5.6679 2.1101 15 6 5.5355 -6.2328 3.6182 16 7 6.4426 -6.3291 4.5670 17 14 3.7413 -6.5833 4.0024 18 1 3.4602 -8.0247 3.7816 19 1 3.4613 -6.2356 5.4187 20 1 2.8761 -5.7682 3.1123 21 6 6.0092 -6.2314 -0.9490 22 6 4.5639 -5.7853 -1.1836 23 7 2.2953 -1.1025 -0.0046 24 1 1.9834 -2.0210 -0.0088 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.9545 2.1268 -0.0008 29 1 5.1429 1.7718 -1.0274 30 1 4.6221 2.4933 0.5142 31 1 5.6644 1.0504 0.5140 32 1 3.7334 -3.3011 -0.0057 33 1 6.3792 -3.6216 -0.9165 34 1 6.4134 -3.5884 0.8628 35 1 4.0529 -6.0402 1.5200 36 1 6.1794 -6.5817 5.4658 37 1 6.7743 -5.8318 -1.6147 38 1 6.1711 -7.2536 -0.6067 39 1 3.7755 -6.5141 -0.9957 40 1 4.3774 -5.0919 -2.0037 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716685806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:41 Heat of formation + Delta-G solvation = 14.775165 kcal Electronic energy + Delta-G solvation = -21366.809547 eV Core-core repulsion = 18182.124656 eV Total energy + Delta-G solvation = -3184.684891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.39705 -40.36784 -39.00901 -35.50220 -34.93328 -33.64640 -32.42422 -32.39748 -28.93459 -28.49933 -26.52523 -25.65653 -23.40770 -22.26932 -21.41484 -20.97446 -20.08092 -19.76203 -19.21705 -17.32161 -16.74225 -16.52203 -16.24003 -16.17268 -15.42943 -15.29663 -14.82261 -14.74719 -14.37748 -14.20244 -13.94449 -13.86634 -13.61877 -13.55704 -13.06940 -13.04919 -12.96289 -12.90900 -12.41149 -12.31926 -12.22523 -11.90156 -11.82798 -11.17742 -11.04645 -10.67920 -10.19271 -9.71419 -9.36514 -8.96309 -8.05183 -5.41434 0.43743 1.31821 1.37849 1.44798 1.74287 2.02084 2.19065 2.35063 2.44610 2.95421 3.27145 3.35574 3.73826 3.90005 3.96581 4.09814 4.20028 4.23893 4.29021 4.63950 4.69174 4.76075 4.79139 4.81291 4.84770 4.88284 4.95569 5.00110 5.12588 5.14647 5.19982 5.31375 5.38324 5.49276 5.76853 5.82544 5.97304 6.17994 6.46171 6.60271 7.03773 7.15350 7.76967 7.96798 9.16358 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015721 B = 0.004955 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.640766 B = 5649.458153 C = 6090.857311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.068 3.932 3 C -0.225 4.225 4 C -0.089 4.089 5 C -0.087 4.087 6 C -0.088 4.088 7 C 0.579 3.421 8 O -0.574 6.574 9 N -0.705 5.705 10 C 0.161 3.839 11 C 0.096 3.904 12 N -0.713 5.713 13 C -0.225 4.225 14 H 0.051 0.949 15 C -0.064 4.064 16 N -0.984 5.984 17 Si 0.957 3.043 18 H -0.276 1.276 19 H -0.302 1.302 20 H -0.246 1.246 21 C -0.183 4.183 22 C -0.145 4.145 23 N -0.530 5.530 24 H 0.425 0.575 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.163 0.837 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.404 0.596 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.370 0.630 36 H 0.257 0.743 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.438 11.319 -14.833 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.051 4.051 3 C -0.249 4.249 4 C -0.098 4.098 5 C -0.145 4.145 6 C -0.200 4.200 7 C 0.369 3.631 8 O -0.454 6.454 9 N -0.355 5.355 10 C 0.035 3.965 11 C 0.005 3.995 12 N -0.355 5.355 13 C -0.356 4.356 14 H 0.069 0.931 15 C -0.256 4.256 16 N -0.634 5.634 17 Si 0.784 3.216 18 H -0.202 1.202 19 H -0.229 1.229 20 H -0.170 1.170 21 C -0.223 4.223 22 C -0.183 4.183 23 N -0.128 5.128 24 H 0.264 0.736 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.181 0.819 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.239 0.761 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.204 0.796 36 H 0.066 0.934 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.124 0.876 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.438 11.457 -14.707 24.206 hybrid contribution -0.593 -1.162 1.065 1.684 sum -16.031 10.296 -13.641 23.433 Atomic orbital electron populations 1.20575 0.84561 1.04942 1.04416 1.21173 0.95313 0.85399 1.03195 1.20855 0.90757 0.99461 1.13811 1.20257 0.96780 0.91168 1.01605 1.20302 0.93942 0.98005 1.02211 1.19985 0.83420 0.94208 1.22365 1.17435 0.87777 0.81866 0.76042 1.90766 1.25971 1.75801 1.52876 1.45659 1.10317 1.04966 1.74576 1.20958 0.87177 0.87858 1.00501 1.20266 1.06049 0.90301 0.82926 1.41932 1.08200 1.76954 1.08415 1.18856 0.89950 1.37890 0.88860 0.93111 1.25558 1.02067 1.02539 0.95398 1.69904 1.34853 1.56336 1.02331 0.85386 0.80620 0.78551 0.77039 1.20158 1.22910 1.16994 1.23391 0.96459 0.99993 1.02462 1.23259 0.94842 1.03110 0.97047 1.41886 1.04396 1.09427 1.57043 0.73576 0.88901 0.90357 0.88336 0.81932 0.91189 0.90074 0.92997 0.76106 0.90712 0.94687 0.79557 0.93405 0.87718 0.89760 0.87622 0.86153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 10.41 71.24 0.74 -0.04 16 2 C 0.07 1.21 7.13 41.34 0.29 1.50 16 3 C -0.23 -4.75 10.66 22.01 0.23 -4.51 16 4 C -0.09 -2.47 6.21 -19.57 -0.12 -2.59 16 5 C -0.09 -2.35 9.83 71.23 0.70 -1.65 16 6 C -0.09 -2.56 7.06 40.35 0.28 -2.28 16 7 C 0.58 20.39 7.79 86.45 0.67 21.06 16 8 O -0.57 -24.46 14.80 -4.32 -0.06 -24.52 16 9 N -0.71 -22.30 5.51 -467.09 -2.57 -24.87 16 10 C 0.16 5.88 5.72 86.38 0.49 6.37 16 11 C 0.10 3.37 2.16 3.61 0.01 3.38 16 12 N -0.71 -31.24 5.29 -303.35 -1.60 -32.84 16 13 C -0.22 -12.61 10.01 84.03 0.84 -11.77 16 14 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 15 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 16 N -0.98 -63.64 13.97 21.65 0.30 -63.34 16 17 Si 0.96 44.26 27.68 68.60 1.90 46.16 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 19 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 20 H -0.25 -9.87 6.61 99.48 0.66 -9.22 16 21 C -0.18 -5.59 10.11 30.62 0.31 -5.28 16 22 C -0.15 -3.57 10.10 30.62 0.31 -3.26 16 23 N -0.53 -10.98 5.99 -171.93 -1.03 -12.01 16 24 H 0.42 6.54 8.19 -92.71 -0.76 5.78 16 25 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.05 1.71 6.48 -2.38 -0.02 1.69 16 32 H 0.40 10.32 7.56 -92.70 -0.70 9.62 16 33 H 0.07 2.53 7.94 -2.39 -0.02 2.51 16 34 H 0.03 1.63 7.76 -2.39 -0.02 1.61 16 35 H 0.37 15.12 5.98 -92.71 -0.55 14.57 16 36 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 37 H 0.10 2.82 8.08 -2.39 -0.02 2.80 16 38 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -77.50 338.30 1.18 -76.32 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: -0.99 Total: 37.46 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 5.24 Total: -2.35 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -4.91 Total: -133.07 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.06 Total: -24.52 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.90 Total: 46.16 kcal Total: -77.50 1.18 -76.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716685806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.095 kcal (2) G-P(sol) polarization free energy of solvation -77.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds