Wall clock time and date at job start Mon Mar 30 2020 01:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36775 * 125.80146 * 2 1 4 4 C 1.47254 * 126.94236 * 359.97438 * 3 2 1 5 5 O 1.21628 * 120.00049 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00056 * 180.02562 * 4 3 2 7 7 C 1.46503 * 119.99979 * 179.97438 * 6 4 3 8 8 C 1.53007 * 109.46811 * 178.33703 * 7 6 4 9 9 N 1.46501 * 115.55161 * 279.55775 * 8 7 6 10 10 C 1.36934 * 119.99886 * 295.37799 * 9 8 7 11 11 H 1.08002 * 120.00350 * 353.74616 * 10 9 8 12 12 C 1.38809 * 119.99703 * 173.75075 * 10 9 8 13 13 N 1.31618 * 120.00123 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 120.00238 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47148 * 89.99937 * 14 12 10 16 16 H 1.48498 * 109.47179 * 210.00028 * 14 12 10 17 17 H 1.48502 * 109.46794 * 329.99945 * 14 12 10 18 18 C 1.52999 * 117.49649 * 133.89048 * 8 7 6 19 19 C 1.53001 * 117.49629 * 65.23170 * 8 7 6 20 20 C 1.46693 * 106.11237 * 180.23779 * 3 2 1 21 21 C 1.34490 * 106.33140 * 359.56784 * 20 3 2 22 22 N 1.34660 * 125.80251 * 179.97438 * 2 1 3 23 23 C 1.46503 * 124.84638 * 0.02924 * 22 2 1 24 24 H 1.09000 * 109.46582 * 89.99862 * 1 2 3 25 25 H 1.08997 * 109.46923 * 210.00210 * 1 2 3 26 26 H 1.09001 * 109.47193 * 330.00014 * 1 2 3 27 27 H 0.97003 * 119.99946 * 0.02562 * 6 4 3 28 28 H 1.08991 * 109.47616 * 298.34249 * 7 6 4 29 29 H 1.09004 * 109.46810 * 58.34399 * 7 6 4 30 30 H 0.97000 * 119.99564 * 115.37798 * 9 8 7 31 31 H 0.97005 * 120.00349 * 180.02562 * 13 12 10 32 32 H 1.09006 * 117.49746 * 0.02562 * 18 8 7 33 33 H 1.08996 * 117.50198 * 145.02227 * 18 8 7 34 34 H 1.08998 * 117.49541 * 214.97273 * 19 8 7 35 35 H 1.08995 * 117.50089 * 359.97438 * 19 8 7 36 36 H 1.07994 * 126.82947 * 179.73505 * 20 3 2 37 37 H 1.07997 * 125.56613 * 180.17823 * 21 20 3 38 38 H 1.09003 * 109.47342 * 89.99678 * 23 22 2 39 39 H 1.09003 * 109.46721 * 209.99774 * 23 22 2 40 40 H 1.08996 * 109.47503 * 329.99374 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8703 2.5156 -0.0005 5 8 0.6840 2.7839 -0.0015 6 7 2.7850 3.5053 -0.0010 7 6 2.3504 4.9044 -0.0021 8 6 3.5762 5.8192 0.0395 9 7 4.1772 6.0108 1.3618 10 6 3.4697 6.6408 2.3506 11 1 2.5108 7.0855 2.1291 12 6 3.9852 6.7079 3.6377 13 7 3.3055 7.3138 4.5880 14 14 5.6436 5.9382 4.0210 15 1 6.7168 6.9418 3.8058 16 1 5.6646 5.4866 5.4355 17 1 5.8677 4.7743 3.1264 18 6 3.6070 7.0035 -0.9288 19 6 4.5165 5.7956 -1.1672 20 6 3.6883 0.6151 -0.0058 21 6 3.6096 -0.7275 0.0009 22 7 2.2948 -1.0921 0.0005 23 6 1.8093 -2.4744 0.0005 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.7312 3.2914 -0.0013 28 1 1.7770 5.1061 -0.9067 29 1 1.7273 5.0920 0.8724 30 1 5.0762 5.6914 1.5367 31 1 3.6659 7.3611 5.4874 32 1 2.7538 7.1311 -1.5951 33 1 4.0747 7.9249 -0.5822 34 1 5.5822 5.9230 -0.9773 35 1 4.2622 5.1280 -1.9905 36 1 4.5890 1.2109 -0.0114 37 1 4.4498 -1.4060 0.0018 38 1 1.6893 -2.8174 -1.0272 39 1 2.5285 -3.1120 0.5147 40 1 0.8491 -2.5223 0.5140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716692919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:25 Heat of formation + Delta-G solvation = 52.952651 kcal Electronic energy + Delta-G solvation = -21326.178138 eV Core-core repulsion = 18143.148747 eV Total energy + Delta-G solvation = -3183.029391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34090 -38.87752 -37.40329 -33.67265 -32.99966 -32.73998 -31.56261 -30.29741 -27.68900 -26.39113 -25.53615 -23.53241 -22.23122 -21.67917 -19.89511 -19.41457 -18.54131 -17.60311 -17.32710 -15.84808 -15.76494 -15.38839 -15.02365 -14.40800 -14.14403 -14.10176 -13.79475 -13.21348 -13.10419 -12.86644 -12.70221 -12.65451 -12.56533 -12.31853 -12.18223 -11.89471 -11.50577 -11.11592 -11.01113 -10.95200 -10.34473 -10.21541 -9.58692 -9.54848 -9.30023 -8.81344 -8.67430 -8.43405 -8.08347 -7.30251 -5.76602 -3.14258 1.88883 2.43963 2.71179 3.37160 3.39518 3.45270 3.75908 3.93493 4.45845 4.53213 4.58636 4.71673 4.81053 4.87531 5.03788 5.05135 5.22096 5.24446 5.40341 5.46559 5.55142 5.60339 5.63452 5.82247 5.91231 5.98351 6.05082 6.19814 6.34127 6.40605 6.45928 6.72328 6.76368 6.79183 7.00839 7.07485 7.19058 8.01100 8.12443 8.42298 8.81400 9.19372 9.90961 10.09398 11.41247 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.004674 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.499849 B = 5989.252493 C = 6484.290018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.099 3.901 3 C -0.229 4.229 4 C 0.587 3.413 5 O -0.559 6.559 6 N -0.709 5.709 7 C 0.149 3.851 8 C 0.134 3.866 9 N -0.713 5.713 10 C -0.242 4.242 11 H 0.093 0.907 12 C 0.009 3.991 13 N -0.930 5.930 14 Si 0.881 3.119 15 H -0.285 1.285 16 H -0.291 1.291 17 H -0.276 1.276 18 C -0.182 4.182 19 C -0.190 4.190 20 C -0.165 4.165 21 C -0.023 4.023 22 N -0.449 5.449 23 C 0.069 3.931 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.397 0.603 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.364 0.636 31 H 0.260 0.740 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.145 0.855 37 H 0.165 0.835 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.375 -18.931 -12.805 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.017 4.017 3 C -0.239 4.239 4 C 0.375 3.625 5 O -0.439 6.439 6 N -0.358 5.358 7 C 0.024 3.976 8 C 0.041 3.959 9 N -0.354 5.354 10 C -0.371 4.371 11 H 0.111 0.889 12 C -0.187 4.187 13 N -0.577 5.577 14 Si 0.711 3.289 15 H -0.212 1.212 16 H -0.217 1.217 17 H -0.202 1.202 18 C -0.223 4.223 19 C -0.227 4.227 20 C -0.189 4.189 21 C -0.149 4.149 22 N -0.126 5.126 23 C -0.073 4.073 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.121 0.879 27 H 0.231 0.769 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.198 0.802 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.163 0.837 37 H 0.182 0.818 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.726 -18.948 -12.606 22.770 hybrid contribution 1.936 -0.645 0.510 2.104 sum 1.210 -19.594 -12.096 23.058 Atomic orbital electron populations 1.20554 0.87175 1.04063 1.03141 1.20304 0.93729 0.85137 1.02556 1.20233 0.93104 0.92293 1.18229 1.17292 0.85397 0.83934 0.75841 1.90702 1.16702 1.84489 1.52043 1.45661 1.09518 1.06055 1.74578 1.21194 0.95798 0.78714 1.01895 1.20081 0.94546 0.97800 0.83484 1.42102 1.15652 1.70091 1.07566 1.19000 1.03210 1.27389 0.87519 0.88923 1.24670 0.98096 1.00414 0.95527 1.69698 1.38286 1.47948 1.01744 0.86598 0.85289 0.79373 0.77608 1.21150 1.21739 1.20150 1.23357 1.01381 0.94091 1.03445 1.23124 0.97229 1.02590 0.99801 1.22050 0.95982 0.93538 1.07313 1.21628 0.85301 0.96213 1.11727 1.43510 1.06037 1.05981 1.57056 1.22057 1.01677 0.80261 1.03289 0.90701 0.92228 0.87855 0.76919 0.92295 0.89956 0.80229 0.93012 0.89550 0.88489 0.89193 0.89127 0.83748 0.81776 0.90849 0.89741 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 9.52 36.01 0.34 -0.74 16 2 C 0.10 1.34 6.89 -81.88 -0.56 0.77 16 3 C -0.23 -3.59 6.29 -103.35 -0.65 -4.24 16 4 C 0.59 10.83 7.81 -12.60 -0.10 10.73 16 5 O -0.56 -11.73 14.81 5.25 0.08 -11.65 16 6 N -0.71 -12.49 5.51 -61.43 -0.34 -12.83 16 7 C 0.15 2.87 5.72 -4.04 -0.02 2.85 16 8 C 0.13 2.57 2.16 -131.81 -0.28 2.28 16 9 N -0.71 -16.58 5.29 -47.23 -0.25 -16.83 16 10 C -0.24 -6.77 10.01 -15.06 -0.15 -6.92 16 11 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 12 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 13 N -0.93 -29.32 13.97 55.49 0.78 -28.55 16 14 Si 0.88 21.99 27.67 -169.99 -4.70 17.29 16 15 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 17 H -0.28 -6.44 6.62 56.52 0.37 -6.07 16 18 C -0.18 -3.10 10.11 -26.69 -0.27 -3.37 16 19 C -0.19 -2.91 10.10 -26.69 -0.27 -3.18 16 20 C -0.16 -2.14 10.56 -37.49 -0.40 -2.54 16 21 C -0.02 -0.25 11.34 -16.83 -0.19 -0.44 16 22 N -0.45 -4.78 3.09 -119.88 -0.37 -5.15 16 23 C 0.07 0.41 10.82 59.85 0.65 1.06 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.52 6.92 -51.93 -0.36 0.16 16 26 H 0.10 1.49 6.47 -51.93 -0.34 1.15 16 27 H 0.40 6.30 7.56 -40.82 -0.31 5.99 16 28 H 0.06 1.06 7.94 -51.93 -0.41 0.65 16 29 H 0.08 1.89 7.77 -51.93 -0.40 1.48 16 30 H 0.36 8.27 5.98 -40.82 -0.24 8.03 16 31 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 32 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 33 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.14 1.66 7.69 -52.49 -0.40 1.25 16 37 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.36 8.13 -51.93 -0.42 -0.07 16 40 H 0.08 0.43 6.87 -51.93 -0.36 0.08 16 LS Contribution 336.54 15.07 5.07 5.07 Total: -1.00 -34.80 336.54 -7.53 -42.33 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -5.79 Total: 13.88 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -2.00 Total: -3.56 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: -0.18 Total: -63.36 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.70 Total: 17.29 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.80 -7.53 -42.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716692919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.285 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds