Wall clock time and date at job start Mon Mar 30 2020 01:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36775 * 125.80146 * 2 1 4 4 C 1.47254 * 126.94236 * 359.97438 * 3 2 1 5 5 O 1.21628 * 120.00049 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00056 * 180.02562 * 4 3 2 7 7 C 1.46503 * 119.99979 * 179.97438 * 6 4 3 8 8 C 1.53007 * 109.46811 * 178.33703 * 7 6 4 9 9 N 1.46501 * 115.55161 * 279.55775 * 8 7 6 10 10 C 1.36934 * 119.99886 * 295.37799 * 9 8 7 11 11 H 1.08002 * 120.00350 * 353.74616 * 10 9 8 12 12 C 1.38809 * 119.99703 * 173.75075 * 10 9 8 13 13 N 1.31618 * 120.00123 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 120.00238 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47148 * 89.99937 * 14 12 10 16 16 H 1.48498 * 109.47179 * 210.00028 * 14 12 10 17 17 H 1.48502 * 109.46794 * 329.99945 * 14 12 10 18 18 C 1.52999 * 117.49649 * 133.89048 * 8 7 6 19 19 C 1.53001 * 117.49629 * 65.23170 * 8 7 6 20 20 C 1.46693 * 106.11237 * 180.23779 * 3 2 1 21 21 C 1.34490 * 106.33140 * 359.56784 * 20 3 2 22 22 N 1.34660 * 125.80251 * 179.97438 * 2 1 3 23 23 C 1.46503 * 124.84638 * 0.02924 * 22 2 1 24 24 H 1.09000 * 109.46582 * 89.99862 * 1 2 3 25 25 H 1.08997 * 109.46923 * 210.00210 * 1 2 3 26 26 H 1.09001 * 109.47193 * 330.00014 * 1 2 3 27 27 H 0.97003 * 119.99946 * 0.02562 * 6 4 3 28 28 H 1.08991 * 109.47616 * 298.34249 * 7 6 4 29 29 H 1.09004 * 109.46810 * 58.34399 * 7 6 4 30 30 H 0.97000 * 119.99564 * 115.37798 * 9 8 7 31 31 H 0.97005 * 120.00349 * 180.02562 * 13 12 10 32 32 H 1.09006 * 117.49746 * 0.02562 * 18 8 7 33 33 H 1.08996 * 117.50198 * 145.02227 * 18 8 7 34 34 H 1.08998 * 117.49541 * 214.97273 * 19 8 7 35 35 H 1.08995 * 117.50089 * 359.97438 * 19 8 7 36 36 H 1.07994 * 126.82947 * 179.73505 * 20 3 2 37 37 H 1.07997 * 125.56613 * 180.17823 * 21 20 3 38 38 H 1.09003 * 109.47342 * 89.99678 * 23 22 2 39 39 H 1.09003 * 109.46721 * 209.99774 * 23 22 2 40 40 H 1.08996 * 109.47503 * 329.99374 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8703 2.5156 -0.0005 5 8 0.6840 2.7839 -0.0015 6 7 2.7850 3.5053 -0.0010 7 6 2.3504 4.9044 -0.0021 8 6 3.5762 5.8192 0.0395 9 7 4.1772 6.0108 1.3618 10 6 3.4697 6.6408 2.3506 11 1 2.5108 7.0855 2.1291 12 6 3.9852 6.7079 3.6377 13 7 3.3055 7.3138 4.5880 14 14 5.6436 5.9382 4.0210 15 1 6.7168 6.9418 3.8058 16 1 5.6646 5.4866 5.4355 17 1 5.8677 4.7743 3.1264 18 6 3.6070 7.0035 -0.9288 19 6 4.5165 5.7956 -1.1672 20 6 3.6883 0.6151 -0.0058 21 6 3.6096 -0.7275 0.0009 22 7 2.2948 -1.0921 0.0005 23 6 1.8093 -2.4744 0.0005 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.7312 3.2914 -0.0013 28 1 1.7770 5.1061 -0.9067 29 1 1.7273 5.0920 0.8724 30 1 5.0762 5.6914 1.5367 31 1 3.6659 7.3611 5.4874 32 1 2.7538 7.1311 -1.5951 33 1 4.0747 7.9249 -0.5822 34 1 5.5822 5.9230 -0.9773 35 1 4.2622 5.1280 -1.9905 36 1 4.5890 1.2109 -0.0114 37 1 4.4498 -1.4060 0.0018 38 1 1.6893 -2.8174 -1.0272 39 1 2.5285 -3.1120 0.5147 40 1 0.8491 -2.5223 0.5140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716692919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:24 Heat of formation + Delta-G solvation = 28.109240 kcal Electronic energy + Delta-G solvation = -21327.255429 eV Core-core repulsion = 18143.148747 eV Total energy + Delta-G solvation = -3184.106682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.25444 -40.30171 -38.91631 -35.30665 -34.80303 -33.60071 -32.50255 -32.35237 -28.88893 -27.18354 -26.67994 -25.61777 -23.47968 -22.89594 -20.98063 -20.86700 -19.82916 -19.67023 -18.36456 -17.24248 -16.70185 -16.63391 -16.35056 -16.23037 -15.60134 -15.38572 -14.91462 -14.72249 -14.29475 -14.13576 -14.00950 -13.87379 -13.59360 -13.53192 -13.12683 -13.01363 -12.91497 -12.82610 -12.44383 -12.27069 -12.17675 -11.84714 -11.78526 -11.01856 -10.98228 -10.58107 -10.02302 -9.47761 -9.31290 -9.07776 -8.01759 -5.37225 0.78002 1.36676 1.41394 1.48373 1.54029 1.91320 2.44674 2.48542 2.63699 3.05601 3.31304 3.41483 3.81900 3.86027 3.98755 4.05406 4.16112 4.21617 4.29135 4.42945 4.44763 4.66197 4.73313 4.75436 4.77509 4.82128 4.85949 5.00343 5.04902 5.09162 5.17870 5.29048 5.38077 5.59837 5.80416 5.81535 6.12153 6.21739 6.40107 6.77669 7.07659 7.43045 7.81653 8.01732 9.19909 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.004674 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.499849 B = 5989.252493 C = 6484.290018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 C -0.272 4.272 4 C 0.578 3.422 5 O -0.598 6.598 6 N -0.703 5.703 7 C 0.162 3.838 8 C 0.098 3.902 9 N -0.714 5.714 10 C -0.223 4.223 11 H 0.051 0.949 12 C -0.064 4.064 13 N -0.985 5.985 14 Si 0.956 3.044 15 H -0.275 1.275 16 H -0.301 1.301 17 H -0.247 1.247 18 C -0.183 4.183 19 C -0.145 4.145 20 C -0.187 4.187 21 C -0.007 4.007 22 N -0.442 5.442 23 C 0.059 3.941 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.407 0.593 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.370 0.630 31 H 0.257 0.743 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.155 0.845 37 H 0.205 0.795 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.913 -22.269 -14.776 26.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.027 4.027 3 C -0.282 4.282 4 C 0.369 3.631 5 O -0.482 6.482 6 N -0.352 5.352 7 C 0.036 3.964 8 C 0.006 3.994 9 N -0.356 5.356 10 C -0.354 4.354 11 H 0.069 0.931 12 C -0.255 4.255 13 N -0.635 5.635 14 Si 0.783 3.217 15 H -0.201 1.201 16 H -0.228 1.228 17 H -0.172 1.172 18 C -0.223 4.223 19 C -0.183 4.183 20 C -0.210 4.210 21 C -0.133 4.133 22 N -0.118 5.118 23 C -0.081 4.081 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.087 0.913 27 H 0.243 0.757 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.204 0.796 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.137 0.863 36 H 0.172 0.828 37 H 0.222 0.778 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.845 -22.333 -14.651 26.773 hybrid contribution 1.028 0.338 1.034 1.496 sum 2.873 -21.995 -13.618 26.028 Atomic orbital electron populations 1.20498 0.86613 1.03876 1.03593 1.20488 0.94424 0.85786 1.01979 1.20232 0.95341 0.91082 1.21552 1.17881 0.84943 0.85390 0.74919 1.90669 1.18275 1.85302 1.53925 1.45579 1.10012 1.05202 1.74454 1.20891 0.95501 0.80023 1.00004 1.20267 0.96374 0.99852 0.82910 1.41947 1.15626 1.69728 1.08250 1.18874 1.01666 1.26072 0.88798 0.93111 1.25532 1.02774 1.01865 0.95329 1.69902 1.40845 1.50604 1.02183 0.85395 0.79927 0.79343 0.77055 1.20087 1.22772 1.17151 1.23388 1.02751 0.93610 1.02551 1.23237 0.97176 1.00654 0.97208 1.22256 0.95049 0.94896 1.08830 1.22241 0.86221 0.95988 1.08867 1.43833 1.05828 1.07024 1.55097 1.22450 1.02834 0.77796 1.05025 0.89899 0.89086 0.91283 0.75734 0.91174 0.95102 0.79583 0.93431 0.87771 0.89733 0.87711 0.86272 0.82783 0.77779 0.89068 0.87282 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.04 9.52 71.24 0.68 -1.36 16 2 C 0.09 2.37 6.89 41.78 0.29 2.66 16 3 C -0.27 -8.46 6.29 -19.04 -0.12 -8.58 16 4 C 0.58 22.01 7.81 86.61 0.68 22.68 16 5 O -0.60 -26.60 14.81 -4.12 -0.06 -26.66 16 6 N -0.70 -25.01 5.51 -466.52 -2.57 -27.58 16 7 C 0.16 6.41 5.72 86.38 0.49 6.91 16 8 C 0.10 3.68 2.16 3.61 0.01 3.69 16 9 N -0.71 -33.09 5.29 -303.33 -1.60 -34.69 16 10 C -0.22 -12.97 10.01 84.03 0.84 -12.13 16 11 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 12 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 13 N -0.99 -64.86 13.97 21.65 0.30 -64.55 16 14 Si 0.96 45.80 27.67 68.60 1.90 47.70 16 15 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 17 H -0.25 -10.55 6.62 99.48 0.66 -9.89 16 18 C -0.18 -5.98 10.11 30.62 0.31 -5.67 16 19 C -0.15 -3.98 10.10 30.62 0.31 -3.67 16 20 C -0.19 -4.48 10.56 23.62 0.25 -4.23 16 21 C -0.01 -0.12 11.34 83.12 0.94 0.82 16 22 N -0.44 -8.01 3.09 -533.18 -1.65 -9.65 16 23 C 0.06 0.46 10.82 127.77 1.38 1.84 16 24 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.09 1.43 6.92 -2.39 -0.02 1.41 16 26 H 0.07 2.10 6.47 -2.39 -0.02 2.08 16 27 H 0.41 12.54 7.56 -92.71 -0.70 11.84 16 28 H 0.07 2.58 7.94 -2.39 -0.02 2.56 16 29 H 0.03 1.52 7.77 -2.38 -0.02 1.50 16 30 H 0.37 16.12 5.98 -92.71 -0.55 15.57 16 31 H 0.26 16.11 8.31 -92.70 -0.77 15.34 16 32 H 0.10 3.01 8.08 -2.38 -0.02 2.99 16 33 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.15 3.19 7.69 -2.91 -0.02 3.17 16 37 H 0.21 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.11 0.37 8.13 -2.39 -0.02 0.35 16 40 H 0.09 0.59 6.87 -2.39 -0.02 0.58 16 Total: -1.00 -81.49 336.54 2.60 -78.89 By element: Atomic # 1 Polarization: 37.20 SS G_CDS: -0.24 Total: 36.95 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 6.53 Total: -0.40 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -5.52 Total: -136.48 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.06 Total: -26.66 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.90 Total: 47.70 kcal Total: -81.49 2.60 -78.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716692919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.999 kcal (2) G-P(sol) polarization free energy of solvation -81.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds